apoc2


Basic Information

Item Value
gene id apoc2
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 25502600 ~ 25504052 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU101746
gcAACAGTGCTGGTTTATCTACCACAGAGTGCACTTTGTCTCTTGGGGCGACAAGTCAACACATTCACGCTCCTATATAAACAGACTGGGCCAGTGGTGCCTCTTACTCTGTTTTCTAGAGAAGAGGGAATACAATACGAGTGACACCATGAATAAGCTGCTTGTCATTACTGTACTGGTTGCGCTCCTCGCTCTCAGCGCTGAAAGCTTCCGTATGCCAaggcaggctgaggaggagcaggGGACCCTGACCAAGATCACAGGCACCATAAGGTCCTACTACGACAATGCCGTCGACACTGCCAATGGATACTTGGATAGCATCAAGGGCCTGAAGCTGGAGGAGAAGGCAAAGAATCTTTACACTGATACTACCACAGTCGTGAGCACATACGCTGGCATCTTACATGACCAGGTGTACCACATCTTTTACCAGAATTAAACAAAAACTGATTTCCAATGGCCTCAGCTACATTTTCTGACAACATGAGAACTTTCAAGCTCAACACGAAAGGCCCAAACGTCAATTGGCATTTCGAATTTGCTCATATCTCACCTCACCCCAGCCTCAAAACCGACAAACAGCatcttcaaaaagaaaaatagtggACCCCCTGCTCTTTGTGGGGCTTTCTTGGGCCACCGCACTGGTGGCAAATGATGATAACCACCCAACAGGGACTGTAatcctttgaaaaaaaaacaacaacaacaacaactaacaGCTTGTACAGAGGAACAGGACAGAAGAAGTTGGCGGTCACAAGGGAAAGAGCACACAGCACCTTATCATGTACCACTGAACTTCTTCCTGGGTGTCAGAGTTAAGAAACAATCATGCAAATAATGTAATGATCTATCGCCACCTACTGGTGTTTTCAGTCATCCCACCtctgaataaattaaaatatttgt
>XM_039806409.1
TCTCTTGGGGCGACAAGTCAACACATTCACGCTCCTATATAAACAGACTGGGCCAGTGGTGCCTCTTACTCTGTTTTCTAGAGAAGAGGGAATACAATACGAGTGACACCATGAATAAGCTGCTTGTCATTACTGTACTGGTTGCGCTCCTCGCTCTCAGCGCTGAAAGCTTCCGTATGCCAaggcaggctgaggaggagcaggGGACCCTGACCAAGATCACAGGCACCATAAGGTCCTACTACGACAATGCCGTCGACACTGCCAATGGATACTTGGATAGCATCAAGGGCCTGAAGCTGGAGGAGAAGGCAAAGAATCTTTACACTGATACTACCACAGTCGTGAGCACATACGCTGGCATCTTACATGACCAGGTGTACCACATCTTTTACCAGAATTAAACAAAAACTGATTTCCAATGGCCTCAGCTACATTTTCTGACAACATGAGAACTTTCAAGCTCAACACGAAAGGCCCAAACGTCAATTGGCATTTCGAATTTGCTCATATCTCACCTCACCCCAGCCTCAAAACCGACAAACAGCatcttcaaaaagaaaaatagtggACCCCCTGCTCTTTGTGGGGCTTTCTTGGGCCACCGCACTGGTGGCAAATGATGATAACCACCCAACAGGGACTGTAatcctttgaaaaaaaaacaacaacaacaacaactaacaGCTTGTACAGAGGAACAGGACAGAAGAAGTTGGCGGTCACAAGG

Function

NR:

description
apolipoprotein CII isoform X1

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0006869 lipid transport biological_process
GO:0042627 chylomicron cellular_component
GO:0008047 enzyme activator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101746 True 915 TUCP 0.46 4 25502600 25504052
XM_039806409.1 False 730 mRNA 0.47 4 25502638 25503905

Neighbor

gene id symbol gene type direction distance location
apoa2 NA coding upstream 3136 25497690 ~ 25499464 (+)
apoc4 NA coding upstream 5954 25495718 ~ 25496646 (+)
apoeb NA coding upstream 14708 25485559 ~ 25487892 (+)
LOC120562741 NA coding upstream 21893 25479261 ~ 25480707 (+)
tomm40 tomm40,LOC106917673,LOC103139243,LOC107083531 coding upstream 58771 25436838 ~ 25443829 (+)
LOC120562605 LOC104951102 coding downstream 2399 25506451 ~ 25510293 (+)
cited4b LOC104958901,LOC106523762 coding downstream 370625 25874677 ~ 25877640 (+)
LOC120563139 LOC106907557,LOC103141567,LOC106948827,LOC107084787,LOC103477829,LOC102227399,LOC102310127,LOC102211983 coding downstream 526711 26030763 ~ 26044380 (+)
themis2 NA coding downstream 546601 26050653 ~ 26058431 (+)
smpdl3b smpdl3b coding downstream 560971 26065023 ~ 26068354 (+)
G75977 NA non-coding upstream 155384 25346263 ~ 25347216 (+)
LOC120561670 NA non-coding upstream 166642 25335016 ~ 25335958 (+)
G75943 NA non-coding upstream 357796 25144579 ~ 25144804 (+)
G75942 NA non-coding upstream 358326 25144058 ~ 25144274 (+)
G75941 NA non-coding upstream 386843 25115556 ~ 25115757 (+)
G76055 NA non-coding downstream 38347 25542399 ~ 25596454 (+)
G76083 rps19,LOC106942871,LOC103477840,LOC102304814,LOC102192408 non-coding downstream 102098 25606150 ~ 25617478 (+)
G76089 NA non-coding downstream 120378 25624430 ~ 25701085 (+)
G76109 NA non-coding downstream 298460 25802512 ~ 25804190 (+)
G76113 LOC101165095,LOC108235336 non-coding downstream 317561 25821613 ~ 25822239 (+)
apoc1 NA other upstream 9338 25491784 ~ 25493262 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other upstream 121802 25374207 ~ 25380798 (+)
LOC120561858 NA other upstream 506291 24915254 ~ 24996309 (+)
grik5 grik5 other upstream 617227 24806289 ~ 24885373 (+)
dedd1 dedd2 other upstream 968324 24520735 ~ 24534276 (+)
taf12 taf12 other downstream 288766 25792818 ~ 25795519 (+)
G76192 NA other downstream 635849 26139901 ~ 26142627 (+)
LOC120562432 LOC101064911,LOC106524684,LOC104919574,LOC106098620,LOC102206486,LOC108235477,LOC102229209,LOC108166993 other downstream 1141332 26645384 ~ 26647615 (+)
G76315 NA other downstream 1304066 26808118 ~ 26815391 (+)
G76355 snip1 other downstream 1379398 26883450 ~ 26886546 (+)

Expression


Co-expression Network