taf12 (taf12)


Basic Information

Item Value
gene id taf12
gene name taf12
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 25792818 ~ 25795519 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU101832
tgtatagatagatagatatctgCGTAGATTAGAATCCGTAACAATTACCTTGCAAATACGGGCTTTAAAGTTGTGCGGTTAAAAAGGAATTACTTGAACAGTTACATATGCGTGATGTGCATGTTGATATTTTGTAAAAGTTTGATACCGTAGCCCAGGTTGTGCAGTTTCCTACCAGACAAAAAGTTTGCTAATTACAGTCTTTATGACATTCACAATTAATTATTTGGTAATAAGTACTAATTCTCCTCAATGCAAGAGCTACCTAAAGTGGGAGACAGTCCCACTGTTAAATCTGCCTTATTCATTCCACCTGCAAACAATTAAAAGTGACAAAttaaagttgttgttgttgggaaCTGTATTATATTTGGCATAaagattttaatttttacacatgGTCAGTGTTATGTTTCAGCCCCATAACCTATTTAGTGGGTCTTGAgtttaaatgcaaaaaaaacccCTCATGGGTGCCATGTCATTTTTGCATTTAGATTCAGATTATTTTGCATTTGTAAAGCACGTTGTGCTGCATTTTTTTGTATGAAaggttatttttattattagacTACTAATAGAGAGGACACAACATGGGCACACCTGTACTCTTTTGTAACTGAGTGAACGGATACATCTGCTTTCTCTCCAGGTGCTCAGTAAGAAGAAGCTGCAGGATCTGGTGAGAGAGATCGATCCGAATGAGCAGCTGGATGAGGATGTCGAGGAGATGCTGCTACAAATTGCAGATGACTTCATAGAGAGTGTAGTGACAGCGGCCTGTCAACTGGCTCGCCATCGTAAATCCAACACCTTGGAGGTGAAGGATGTTCAATTACATCTTGAGCGCCAGTGGAACATGTGGATTCCTGGTTATGGCTCAGATGAGATCCGGCCGTTCAAGAAGGCTTGCACCACAGAGGCTCACAAACAGagAATGGCGCTGATCCGCAAGACAACCAAAAAGTAGCAAGACTGTACACTGATGTGTTGTACCCACTCCGTGtaatgtcttttctttttcagttggGATTGTTTTGACTAATAAGGAAGAAAGAGATGGTTTGggtgggatttttttttccattagaTAGTTTCATTGTTATGTCTCCCTAACGTTTGAGTGTTTTGCCAGCACCATCACACAATGTAATTCTTGTCTaatgattttgttttgttgccatTAAGCTAAGCCTGGCAGAACTCTATTCATTGCATTTTTGTCAataaacatttactggaatactTCTTTTCGATGACCACTGCTGCATCAGGATTGCCTTTTGATACTCTAGAGCATTTTGTTcggaatgttaaaaatgtttggtGTTATCTTGCATATAATGGTTAATCATAACTGTTGAGTATGTAGTGGATTATAGCTCCCCTGTTCACCCACTCTACTCACACAATACTGttgattagtgttttttttt
>XM_039806145.1
ATGGGTGCCATTGAACGGATACATCTGCTTTCTCTCCAGGTGCTCAGTAAGAAGAAGCTGCAGGATCTGGTGAGAGAGATCGATCCGAATGAGCAGCTGGATGAGGATGTCGAGGAGATGCTGCTACAAATTGCAGATGACTTCATAGAGAGTGTAGTGACAGCGGCCTGTCAACTGGCTCGCCATCGTAAATCCAACACCTTGGAGGTGAAGGATGTTCAATTACATCTTGAGCGCCAGTGGAACATGTGGATTCCTGGTTATGGCTCAGATGAGATCCGGCCGTTCAAGAAGGCTTGCACCACAGAGGCTCACAAACAGagAATGGCGCTGATCCGCAAGACAACCAAAAAGTAGCAAGACTGTACACTGATGTGTTGTACCCACTCCGTGtaatgtcttttctttttcagttggGATTGTTTTGACTAATAAGGAAGAAAGAGATGGTTTGggtgggatttttttttccattagaTAGTTTCATTGTTATGTCTCCCTAACGTTTGAGTGTTTTGCCAGCACCATCACACAATGTAATTCTTGTCTaatgattttgttttgttgccatTAAGCTAAGCCTGGCAGAACTCTATTCATTGCATTTTTGTCAataaacatttactggaatactT

Function

symbol description
taf12 Predicted to enable DNA binding activity and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF12 (TATA-box binding protein associated factor 12).

NR:

description
transcription initiation factor TFIID subunit 12 isoform X1

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0005669 transcription factor TFIID complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101832 True 1436 lncRNA 0.39 4 25792818 25795519
XM_039806145.1 False 635 mRNA 0.44 5 25793287 25795331

Neighbor

gene id symbol gene type direction distance location
LOC120562605 LOC104951102 coding upstream 282525 25506451 ~ 25510293 (+)
apoa2 NA coding upstream 293354 25497690 ~ 25499464 (+)
apoc4 NA coding upstream 296172 25495718 ~ 25496646 (+)
apoeb NA coding upstream 304926 25485559 ~ 25487892 (+)
LOC120562741 NA coding upstream 312111 25479261 ~ 25480707 (+)
cited4b LOC104958901,LOC106523762 coding downstream 79158 25874677 ~ 25877640 (+)
LOC120563139 LOC106907557,LOC103141567,LOC106948827,LOC107084787,LOC103477829,LOC102227399,LOC102310127,LOC102211983 coding downstream 235244 26030763 ~ 26044380 (+)
themis2 NA coding downstream 255134 26050653 ~ 26058431 (+)
smpdl3b smpdl3b coding downstream 269504 26065023 ~ 26068354 (+)
LOC120561982 maneal,LOC102777073 coding downstream 293434 26088953 ~ 26104684 (+)
G76089 NA non-coding upstream 91733 25624430 ~ 25701085 (+)
G76083 rps19,LOC106942871,LOC103477840,LOC102304814,LOC102192408 non-coding upstream 175340 25606150 ~ 25617478 (+)
G76055 NA non-coding upstream 196364 25542399 ~ 25596454 (+)
G75977 NA non-coding upstream 445602 25346263 ~ 25347216 (+)
LOC120561670 NA non-coding upstream 456860 25335016 ~ 25335958 (+)
G76109 NA non-coding downstream 6993 25802512 ~ 25804190 (+)
G76113 LOC101165095,LOC108235336 non-coding downstream 26094 25821613 ~ 25822239 (+)
G76125 NA non-coding downstream 60235 25855754 ~ 25856690 (+)
G76126 NA non-coding downstream 61281 25856800 ~ 25857528 (+)
G76128 NA non-coding downstream 71767 25867286 ~ 25867490 (+)
apoc2 NA other upstream 288766 25502600 ~ 25504052 (+)
apoc1 NA other upstream 299556 25491784 ~ 25493262 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other upstream 412020 25374207 ~ 25380798 (+)
LOC120561858 NA other upstream 796509 24915254 ~ 24996309 (+)
grik5 grik5 other upstream 907445 24806289 ~ 24885373 (+)
G76192 NA other downstream 344382 26139901 ~ 26142627 (+)
LOC120562432 LOC101064911,LOC106524684,LOC104919574,LOC106098620,LOC102206486,LOC108235477,LOC102229209,LOC108166993 other downstream 849865 26645384 ~ 26647615 (+)
G76315 NA other downstream 1012599 26808118 ~ 26815391 (+)
G76355 snip1 other downstream 1087931 26883450 ~ 26886546 (+)
G76417 NA other downstream 1489019 27284538 ~ 27288457 (+)

Expression


Co-expression Network