LOC120562350


Basic Information

Item Value
gene id LOC120562350
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 28836396 ~ 28842270 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU102728
agagaggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggctagctgaaaagtctgtgggatctataaaatcagtgttgatacaagcatcagtgttccttgaatagcttaattagcttctcttgcattggtgctcttttccagggcatatactgtactactttcagctttattgtagcttttgggaagggctATAGTTATGGTTgtagtatttagcagacacttatgtccaaagtgacaaaatatgaatcttacaatagttaaaaattgttaaaaattaacagtaaactgtttttaaagttgctaagccaatattaagcaaaatagtaataatatcaataatgacaatacaatatcaataataaaaactaataaaaataccataaatatacaaatcataactctaatgAATGAGTGCACAGATAATGAAGCAGAATTACTAAAGAAAGCAGAGAgagaccaagggggtaagcttctctTCACAACCTGTAGAtcctatggcaccattttgatgctacctagctctcacccgccgttagcattccattgactgccattcattttgaagtcattttgacagcgaataactttacatctgaagcgtttaaagactttatttgtccattgtttatttctaaagaaacacaacaatgtaaaaggctccattatcTTGTATCTCACGTCATGGCTCCGTaacagacgtttttgtaaaaataggctaacaattgtgtcataaccacgcgttTGCCGTATAGTACACagatagtacaggagaagcttgcaggcagttttgacttacattagctgtttcagtttaattactaatgttaactagcattttagttagcaataattagcctgtgcctatgttatctccttacatatacctacgctctctgtctctgcaagatttggaatgattgagatttctcttggcacagctaccagaagacttccaactttcagacaggttgttcacgtcacatctacgtcggcaagctcagttggaggctgcgcagtaacactcagctatcaccggaaaagtgcttctaatatccttcactggtctccgtccagagcaacgggatctgttggtccattttatactgtctatggtttcaGCATATGATAGaaagttttataagtcttacctactgcacctttaatccGTATTACCTGAACATTTGAAACTGTAGCCTGGTGGTTTCATTTTTACCATTTAATGTAAATTTTatgctatactatactatactatgtcttagTTCACCTTAGAAGCAGACACCAATGCTCTGAGTGACTCAAAACCAGGACGGGCAAGTCACGGACAAATCAATCAAAGCAAGAGCTTCTGAGAGACAGTCAGGATCTATAGTAGCAGCTTCTTTGCCGTGTCAACGGCAATAAAGAAGAGACGTATCACTCTGTTGGAGTTGCTGAAACTACAGAACCACTATAGAAATCTTCAAAACCCTCACAAAAGATCTATTGGCTGGGTCTCAAACACAGACTGGAAATAGTACACAAACCTGACAAGTTTAATTTGGGCCTTTTATCAAGTTATTCATGGAATTAGCGGCAGCTAATATGACCTGTTATAAAACCCAAGAGTCTGATACAAAATGTTTACAGTCAGGTGTAGCGATCAATCACTTACGCAACACTTTCTATTTCCTTTGTCCTCAGAGAAACCCTCTCTGGATGGCCGCCTAGCTGCACTGATGAGAAGGCAGCCACAGTCACAACGGATAGAGACAAGATTTTGATTATGCTGCGAGTTCAAAGCATTCATATGGAAACCGGAGAACAGTGACATCGGGGAGGACCGTGAACGCATCCCAAGCAGCAAACTGGAGAACAGTGACATGTTTGACCTGGTGAATCAGATGTGGAAGACCTACATCCAGCAGTCTGTGGAGGTGACCATGAAGGTTTTAAAGCAAATAGACAGGAATGATCTGGTGCAGATATTGTCAGTCACCAGCTCATGATCCAAAGAGAAACTCTGTGGATGAACAGCTGTCTGCACGGATCCAGAGTGAGCAGAGGCGCATCTGTGTCTGACTCTACACACAGCTTTTATTCAATGCATGCATGGTTGAAAATCAACTTGAGCTGAATATTGCAAGtttttaaaacaacttttaaaatgattgtaactattttaaagcatgaaaacagatcatGAGTTCTTTTAGCTTCCCTTATAGCAACAGATCAGGTGGCTCATTCCAGGGTTTTTTAGCAGCACAGTGTTTACAGTTTACAGAATGTAAAGGGATACAGGGAATCATCTTGTTTAAATGTAAGCACATATCAGTATTTCAGCTACACTACAGAAATGGAACAAAAGAAATCTACCCCAATGGTTCTCAAAACATCTGATGTAGTGTACGCATTAACTCTGAGGTTATTGgggtaaaaaaaatgcaaatacttGCCTCACATGTTTGAGATTCAAAGAGATACATCCTTGATTATTTTTGTGGATAAATTACATAGTATATGGATATGCCtttatgtacatttttatttttccatttaaaatcattgatgtttttttatagtttttttactgtattttcttttatagttaaactgtatagtttttttaaaccatttgatATCTTaaataaagcactttgtgacggGGCGCATGGCTGCCGTCACGGTAGCGATACGCTACCTATTTTAATTCTCTGAGTTTAGACTTTGCAGAAGACTGAGTGAAGAGGTTGCCTGAATATGTTTGTTTGACGAGTCTATATGTTCGGTTTGTATATTGGTTGTATATCATCTGTCATTCATCAAATTCCCCATATTAATCCCGTAGTTTTGTGTACATTAGATAACATCTAATACTGCGGTGATTTGCTATAGGCCTAGTTATATTCATCTATACAtcattgtttattgtttaaaacCGTAGAGATTGCCACAAACATCACCCGTTATAAGAACCATCACAACACTTAAGTCTTTGGTAATTGATGTTAGTTTATTGAGTGTAAAAGTATACAGAGGGTCAAATTATGTGGGCTTACCAGCATGTGCTCTTTGTTATAGGGTAAAGTTTGCTGCTATCCTTCTGTGTAAATTGGTCTGTGACTTCCGGGGTAACAGGAAGTTGACCTGtattttatgtagcctattataTTTTACAGCCAACAAGATGTCTTGTGGCTGTGGTTAATTGTAATGAccattgtatacattatatgCTGTATCATTCAGTCTAGATCTTATCTGTATTTTGGCTGTATTAAGCCTTATTGGTGTACTCACCTGAAATACCCCTGTATTGTGTATGTTGGTATGTTCCATGATCAATCATTATTCTTGATAAACTGC
>XR_005639754.1
gtccattttatactgtctatggtttcaGCATATGATAGaaagttttataagtcttacctactgcacctttaatccGTATTACCTGAACATTTGAAACTGTAGCCTGGTGGTTTCATTTTTACCATTTAATGTAAATTTTatgctatactatactatactatgtcttagTTCACCTTAGAAGCAGACACCAATGCTCTGAGTGACTCAAAACCAGGACGGGCAAGTCACGGACAAATCAATCAAAGCAAGAGCTTCTGAGAGACAGTCAGGATCTATAGTAGCAGCTTCTTTGCCGTGTCAACGGCAATAAAGAAGAGACGTATCACTCTGTTGGAGTTGCTGAAACTACAGAACCACTATAGAAATCTTCAAAACCCTCACAAAAGATCTATTGGCTGGGTCTCAAACACAGACTGGAAATAGTACACAAACCTGACAAGTTTAATTTGGGCCTTTTATCAAGTTATTCATGGAATTAGCGGCAGCTAATATGACCTGTTATAAAACCCAAGAGTCTGATACAAAATGTTTACAGTCAGGTGTAGCGATCAATCACTTACGCAACACTTTCTATTTCCTTTGTCCTCAGAGAAACCCTCTCTGGATGGCCGCCTAGCTGCACTGATGAGAAGGCAGCCACAGTCACAACGGATAGAGACAAGATTTTGATTATGCTGCGAGTTCAAAGCATTCATATGGAAACCGGAGAACAGTGACATCGGGGAGGACCGTGAACGCATCCCAAGCAGCAAACTGGAGAACAGTGACATGTTTGACCTGGTGAATCAGATGTGGAAGACCTACATCCAGCAGTCTGTGGAGGTGACCATGAAGGTTTTAAAGCAAATAGACAGGAATGATCTGGTGCAGATATTGTCAGTCACCAGCTCATGATCCAAAGAGAAACTCTGTGGATGAACAGCTGTCTGCACGGATCCAGAGTGAGCAGAGGCGCATCTGTGTCTGACTCTACACACAGCTTTTATTCAATGCATGCATGGTTGAAAATCAACTTGAGCTGAATATTGCAAGtttttaaaacaacttttaaaatgattgtaactattttaaagcatgaaaacagatcatGAGTTCTTTTAGCTTCCCTTATAGCAACAGATCAGGTGGCTCATTCCAGGGTTTTTTAGCAGCACAGTGTTTACAGTTTACAGAATGTAAAGGGATACAGGGAATCATCTTGTTTAAATGTAAGCACATATCAGTATTTCAGCTACACTACAGAAATGGAACAAAAGAAATCTACCCCAATGGTTCTCAAAACATCTGATGTAGTGTACGCATTAACTCTGAGGTTATTGgggtaaaaaaaatgcaaatacttGCCTCACATGTTTGAGATTCAAAGAGATACATCCTTGATTATTTTTGTGGATAAATTACATAGTATATGGATATGCCtttatgtacatttttatttttccatttaaaatcattgatgtttttttatagttttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102728 True 3399 lncRNA 0.38 3 28836396 28842270
XR_005639754.1 False 1478 lncRNA 0.39 3 28837541 28841494

Neighbor

gene id symbol gene type direction distance location
LOC120562344 NA coding upstream 36700 28779144 ~ 28799696 (+)
LOC120562348 LOC104949128 coding upstream 60337 28775631 ~ 28776059 (+)
si:ch211-225p5.8 NA coding upstream 62799 28766995 ~ 28773597 (+)
scn1ba LOC104930292 coding upstream 108122 28710637 ~ 28728274 (+)
LOC120561727 NA coding upstream 131070 28699900 ~ 28705326 (+)
trnag-ucc_8 NA coding downstream 4125 28846395 ~ 28846466 (+)
trnaa-ugc_7 NA coding downstream 4442 28846712 ~ 28846783 (+)
LOC120562582 NA coding downstream 47780 28890050 ~ 28894411 (+)
LOC120562583 NA coding downstream 55814 28898084 ~ 28903797 (+)
fli1rs LOC104940799,LOC103372032,LOC104935032 coding downstream 76257 28918527 ~ 28937763 (+)
G76774 NA non-coding upstream 103969 28672027 ~ 28732427 (+)
G76767 NA non-coding upstream 131764 28690615 ~ 28704632 (+)
G76780 NA non-coding upstream 143281 28692141 ~ 28693115 (+)
G76726 NA non-coding upstream 238256 28590114 ~ 28598140 (+)
G76718 NA non-coding upstream 258749 28575516 ~ 28577647 (+)
G76859 NA non-coding downstream 38703 28880973 ~ 28881188 (+)
G76887 NA non-coding downstream 96939 28939209 ~ 28940355 (+)
G76885 NA non-coding downstream 98792 28941062 ~ 28942726 (+)
LOC120563088 NA non-coding downstream 101635 28943905 ~ 28951524 (+)
G76935 NA non-coding downstream 173606 29015876 ~ 29085487 (+)
LOC120562342 NA other upstream 1028 28800650 ~ 28835368 (+)
G76714 NA other upstream 266530 28553572 ~ 28569866 (+)
G76707 NA other upstream 314774 28520699 ~ 28521622 (+)
LOC120562434 NA other upstream 419641 28414518 ~ 28416755 (+)
drd2l LOC108240316,LOC107379306,LOC103372392 other upstream 420743 28388097 ~ 28415653 (+)
pear1 LOC104932170 other downstream 337560 29179830 ~ 29244092 (+)
mex3a mex3a other downstream 433877 29276147 ~ 29288548 (+)
G77009 ubqln4 other downstream 486519 29328789 ~ 29330258 (+)
LOC120562177 LOC104942602,LOC104934039,LOC103362363 other downstream 541865 29384135 ~ 29390053 (+)
G77028 LOC104942601 other downstream 561738 29404008 ~ 29412413 (+)

Expression


Co-expression Network