LOC120562177 (LOC104942602,LOC104934039,LOC103362363)


Basic Information

Item Value
gene id LOC120562177
gene name LOC104942602,LOC104934039,LOC103362363
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 29384135 ~ 29390053 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU103024
GTTTATTTGGAAGATTTAATACCATCATTGCTTCGGTTTACCAACAGGATTTTGAATCTAAGACACTGAAAACCCAAATATAAAGTATGGAAATAGAAATATCTAAAAGAGTGcgagatacaaaaaaaaagatttaatcaataattctacagtaaatatgttgCTTGTTTTGgtcaaataataaaagaaattcaaagaaagaaatgtatttAACTTAAAGGTGATAACAACatttaaacaacacacaaacaaagaagaaacacaaattacaGCGGTTTACGATAAAGAACAAATGATCTAAAACAAAACAGTGGTGTCTAGCGGCAGTGTCTCCATGACATACTGCAGTTCTTACAAAGTAGTGTTGATCATGGTCAAATTATACAAATTTTGATCAAAATCTccagaaataaacaaaagatCCCAGACCCACAGTTTATATTGTCCAAAATTCAACAATTTATTTCTATATAGAAGTAAATCCTCAACCACTGAGCAGGTACAACTTTCCAGTATGTGTTGCACAACCACACAGGTGAAGACGTGACACAAGAATAGCTATGCTAGGCATCTGTATGTAAACAAAGTGCTGCTGTCACTACGCCTCGGCATGTTCAGGGCAGGGTCACCACAGCAAATGCTGTTTGAGGCCTTGTCTCTTGTGCTGTGTTTGTGCCGTACAGCAACCAGTAACAAGGTTTGTTATTTTTGTCAGATGAGTACAAGAAGTGAAATCAAAATGAAGGTTTCTGTCACAGACTCTGGAGTCAGGCATTTTTCTCTCATAGCTTTGGTGTATGTGTCCTCAACAGGGCGAGGTCACCGCTTATCTCTACCAGCAGCACATAATCTCCGTATGACAGCTGAATTCTTAATCGACAACTTtcccaaaacaaaacaaccctGTCCTCCTAACATTTACGGCAAATGTAAAAACACAATTGTTGATCTTATACCACTATTTTTCAGCAACAAATTATGTTAAACTATTTACCAATTTCATTACAAAAAGAGGAGACACTGTGATAGAATAAAGCCTAAACAAAAGGGCAAAGCTCTTCTGTCTGTTCCGAGAAATAAACAAAGCCCAGCTGCATGGGATGAAAAAGGTCATTATTCTTAGTTAAAGAATCAAGTTTATGCTACTTTCTTGTggaaagtacacacacacacacaatatattgCATGTCTTTCCATCCTGGAAGAGGGATCCCTTCTGAGAtgtcttgcttttttttatcccattaaagtttttttttgcttatcCAAATTGAGGGTCTAAGGACATAGGGGGGTCGTATGCTGcacagattgtaaagccccttAAGGGAACTTTGcgatttgtgatattgggctatttaaataaaattgacttgacttgacatgATGCACCTTCACAACGGCAAGAAGCTACTGTAACAGTAAACACTCTTAGAAAAAGGGAATAATTCTGTAAAAAACGACTATTAATTCAATTAAGGAATATACTGTGTAGTATTTCACTGCTGAGGCCAAGCAGGGAGGCAGCAATCAACTCCGTGATTATCCGTGTAAATATGAAGCAACCTACAATCATAGAATGACTTTTGAGAGTTTTTTCAGCGTCTTAAAACTTCAAGCAGAGTGAGCGCAGACGTAGATGTTTTTGTGCTCCTCCCAGTAGTGGAGCTCATCTGTGAAGCTCCAGGAGCAGGCCAGGTCTTTGCTGGTTTTGACCGTGTGGACCATGCAGTGGCCGGGCAACTTCTCAAACAGGTCCTCAGCTACATTGACCACCGAGACTTTCTTCTGACTCTGGATCAGCTGCTGGATGTGATTCTTATCCACAGGCTCAGGGGAGGAGCTGTAGGACACCCAGACATTGAGTTTCTCATCTGACGAAGGGACCTGGAAGCGACTCTTCCCTGTCGGGCAGTGGTAATCCTTCTTGTTGGCGAACAGGCCTGAAGGGGTCTTAAATATACGCACAGACCAGCCAACCCAGTCATACTTCTTCTTGAGTTTCTCTATGATAGCATCAGCTAGCTGCTGGTTGGTTAAGTTTGACTCGTCTCTCACCAGGCGACGGGAATCTATCTCAGCCTGCTTGGGGAAGCTGACGATGCAGTCTTCAATGACAACATTCATTTTATTCTGGACAGTATTCATCTTCTCACCCCAGTCTTTCAGAAGCGCGTCCTCCTCATCGTATCCCTTCAGAGCGGCGTGGCCCAGAAGTGCGATGAGCCCGATGCAGAAGAGCTTCTTCAGCCTGGCGCAGAAGTCCTCCACCGGCCGGCGACTTTTCTCTTCGTAGTTCAGGGTGATCTCCAGCACAGATTCCCCAGAGAAGTTATCTCCCGTCACAGAGTTGTAGAGGGTGATAAGGTTTTTGTCACCCCCGGTCTTGGCAAAATGCTCCAAGAAAAGTTTCTTCTTGACCTCCCGGAACTTGGGTTTGGCGTTGAGGATGTCCATGTACTTCCTGAACTGGTTAGTGATGTTCTCCTCCACTGGGAAATACACGGCATCCAACCCGCTCTTCTTGATCTCATCGTTGATCCGCTGAATCTCCTCTGAGACCACCTCCAGACGCTCTCGCACCTTCTGAAACTGCTCTTTCATGAACGCAGCCTCTTTGCTTTCCACATTATCCAGAGCCAGTTTAACAATTGGAGCAGCGATGGAGAAAATGGGGAAAAGGTCGCCGGCGATACTGGCCACCACTTCAGCTCCCTGTTCAAACAATTCCATCACAGTCTCCACCATATCCTTTTTGTCCGCTACAAGCTGCTGTAGCTGGCTTGCCATCTTTGCTGATGCTGTATCTCAGACTGATTCTAACAAGAGAAAAAATAttgacatgTTCTGTTCCAGTGTTGGTGGACTGCGGCCTGCCTTCTTGTTCCTCTTACAACACAGCAAAAACTgataaggaaagaaagaaacagcCAAggtcCCAGGGGTTGTGTTACTGCAGTCTGAGTGCATGTGAagcaccatcacacacacaatttaaacATAAAAGTGCTTAAAGAAATCACATtttcagagacagagagctgcAGGTGCATCTCACCAGAGATATGAAGTCCAGGCTAACAGACAAGCATAACAAGTCTTGTTTTTGTAAACTAATATTTCCACCTATGCCCAGTAATATACAGTGAtggaaagtaacaaagtacatttactgtactGAAGTACAACCTTGATGCACGTAACCTGAGTATTTCCATGTTATGCTACTTTATTTCAGAGGGAAACATTGTACTctttactccactgcatttatttgacagctatatAGTTACTACtacttttcagattaaaatTGTACATAAAGAAAGATAaccatgtaaaataaaatgcaccGTTAATAATGATTTCCAACCATTTAAGCTTGTGACCTATATCTATGCTTGTGACCCCTTGTTATATTTCAGGTATGAAAACTAACACACTTGTGAGAGGGTTTAATTTAAATAACTGTTTGATGGTTacctatatttcataaaaacgCAAATATTAGTAAAAAGTCCCCAAAAAAATGAATAGAGATTTGAGAAATAGatcttttgttttagttttgtctTGTTTCCTACCACATTAATTATCTCCCAACAGTAATCATCATGCATCAGTATCTAATAATGCAATAATATGTCAGTCGAGGACATTTTTCTGCAAGATGAGTACTTTTGAtctactttaaatacatttagctGATAGTA
>XR_005639706.1
CTCCACCATATCCTTTTTGTCCGCTACAAGCTGCTGTAGCTGGCTTGCCATCTTTGCTGATGCTGTATCTCAGACTGATTCTAACAAGAGAAAAAATAttgacatggtcagaaacagtCTGTTGTGATATATTTAAGATATTCTAGGAACAAGCATACAGGGGAAAAACTGAACACAAATGAGGCAGAAAGTATCAGACATTTCAGTTTTACCGACAGACACAAATGTTGGGTTTTCTTGATGTACTTACAGTTCTGTTCCAGTGTTGGTGGACTGCGGCCTGCCTTCTTGTTCCTCTTACAACACAGCAAAAACTgataaggaaagaaagaaacagcCAAGTGAGTTCAGTGCTGGCTGCTGGCCACACCCAGTGAGCGATGAGTCAACAATGCAAAGAGAATTCAGCAGTGACAAAAAGCTGggtcCCAGGGGTTGTGTTACTGCAGTCTGAGTGCATGTGAagcaccatcacacacacaatttaaacATAAAAGTGCTTAAAGAAATCACATtttcagagacagagagctgcAGGTGCATCTCACCAGAGATATGAAGTCCAGGCTAACAGACAAGCATAACAAGTCTTGTTTTTGTAAACTAATATTTCCACCTATGCCCAGTAATATACAGTGAtggaaagtaacaaagtacatttactgtactGAAGTACAACCTTGATGCACGTAACCTGAGTATTTCCATGTTATGCTACTTTATTTCAGAGGGAAACATTGTACTctttactccactgcatttatttgacagctatatAGTTACTACtacttttcagattaaaatTGTACATAAAGAAAGATAaccatgtaaaataaaatgcaccGTTAATAATGATTTCCAACCATTTAAGCTTGTGACCTATATCTATGCTTGTGACCCCTTGTTATATTTCAGGTATGAAAACTAACACACTTGTGAGAGGGTTTAATTTAAATAACTGTTTGATGGTTacctatatttcataaaaacgCAAATATTAGTAAAAAGTCCCCAAAAAAATGAATAGAGATTTGAGAAATAGatcttttgttttagttttgtctTGTTTCCTACCACATTAATTATCTCCCAACAGTAATCATCATGCATCAGTATCTAATAATGCAATAATATGTCAGTCGAGGACATTTTTCTGCAAGATGAGTACTTTTGAtctactttaaatacatttagctGATAGTACTTTTATGTTgtagtttacagtgtggtatttgcACTTTGTTTTAGTTCAAACTGGTAATAAATAGTTTTATGTAATGTGCTGAACAACAGTAAGCTACATTGGAAATATTTAACAGCATTTGCgattatgataaaaaaaaaaaaaataaaccgaAGTGAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC104942602

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103024 True 3713 TUCP 0.41 4 29384135 29389892
XR_005639706.1 False 1364 lncRNA 0.36 2 29386990 29390053

Neighbor

gene id symbol gene type direction distance location
LOC120562990 NA coding upstream 23010 29355633 ~ 29361125 (+)
LOC120562792 NA coding upstream 28593 29352141 ~ 29355542 (+)
LOC120562836 NA coding upstream 35312 29339254 ~ 29348823 (+)
LOC120562877 LOC103362365,LOC104932167,LOC104967986 coding upstream 45161 29337456 ~ 29338974 (+)
LOC120562725 NA coding upstream 215204 29163561 ~ 29168931 (+)
LOC120562942 NA coding downstream 352956 29743009 ~ 29745181 (+)
ntrk1 NA coding downstream 390126 29780179 ~ 29811789 (+)
pbx2 LOC103356852,LOC108245987,LOC101487230,LOC102193020,LOC100704063 coding downstream 735873 30125926 ~ 30133536 (+)
LOC120561633 NA coding downstream 746228 30136281 ~ 30137569 (+)
tap1 tap1 coding downstream 779961 30170014 ~ 30182142 (+)
G77014 NA non-coding upstream 18705 29363233 ~ 29365430 (+)
G77004 NA non-coding upstream 69510 29314099 ~ 29314625 (+)
G76995 NA non-coding upstream 82000 29296958 ~ 29302135 (+)
G76969 NA non-coding upstream 256923 29126955 ~ 29127212 (+)
G76935 NA non-coding upstream 298648 29015876 ~ 29085487 (+)
LOC120562102 NA non-coding downstream 23206 29413259 ~ 29424203 (+)
G77033 NA non-coding downstream 43107 29433160 ~ 29439174 (+)
G77097 NA non-coding downstream 74559 29464612 ~ 29465552 (+)
G77114 bola1 non-coding downstream 192704 29582757 ~ 29585000 (+)
G77172 NA non-coding downstream 422878 29812931 ~ 29813541 (+)
G77009 ubqln4 other upstream 53877 29328789 ~ 29330258 (+)
mex3a mex3a other upstream 95587 29276147 ~ 29288548 (+)
pear1 LOC104932170 other upstream 140043 29179830 ~ 29244092 (+)
LOC120562342 NA other upstream 548767 28800650 ~ 28835368 (+)
G76714 NA other upstream 814269 28553572 ~ 28569866 (+)
G77028 LOC104942601 other downstream 13955 29404008 ~ 29412413 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other downstream 683884 30073937 ~ 30109545 (+)
G77239 NA other downstream 733649 30123702 ~ 30124638 (+)
LOC120562443 NA other downstream 961442 30351495 ~ 30360588 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other downstream 1297285 30687338 ~ 30731609 (+)

Expression


Co-expression Network