LOC120562092


Basic Information

Item Value
gene id LOC120562092
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30118008 ~ 30121096 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU103297
TGCACCTCCACTCCAGATAAAGCTTTTAATCAGTAGGCGGGTTGCAGCGCGGCACAACACTCGAGTCGGAGCCAACCAGACCAGTGTATAAACGTTGGCTGCAGGCTCAAAGTGGCGCGAGCAGAAGATCTTGCATTGCCTTTTTCCACACTGAAGCCTGGTTTTTCATCTCCTGCTAAGTTGCTTAGAACTTGACGATTTGGAGCAGAGGCCGAGAAAAGCAGTATGCGTGACAGAATAATGACGGTCATCAAGAATGGGAGATATCTTATGACATTTGACCTGAAATTGAGACGTTTTGATGAATCTCAACCAGCAGTGTTGATCAAAGCGTTGCTATCACATAACACATAATTGTGCATTGTTTGAGGAAGTGACGCAGTGTCCTCTCGTCACCTCTTGTGCAGACGGGCCAGGACTTCCTCGGAAACCTTTCCTCTGCGCTGAGGGGGCTAAACGCACATCAGAGGAGGTCACAGGTTGCCAGGGGGCCCCTTCTGGTTGGTGATACACTGTGGCCCTGGATTATTATGTTATTTAAGTATATCGGGCCTTTAAAAACAAGTTGGAGCATAAGTTTGAATGAGTTACAACCCTGTTCTAATAGCAGCGAATACTGTAAAGCATTGTTATTGACGATTAACTTCACAGTTAACACTATATTTATGTCAAACTTTGTTTGAGTCCTctaataaatattaatattcataaaaaatacACCGTTAAATGTGTAAATCTACTATTTGTCTTTGGGGTGATGTGACTttcaataaaaat
>XR_005639689.1
TGCACCTCCACTCCAGATAAAGCTTTTAATCAGTAGGCGGGTTGCAGCGCGGCACAACACTCGAGTCGGAGCCAACCAGACCAGTGTAACTTGACGATTTGGAGCAGAGGCCGAGAAAAGCAGTATGCGTGACAGAATAATGACGGTCATCAAGAATGGGAGATATCTTATGACATTTGACCTGAAATTGAGACGTTTTGATGAATCTCAACCAGCAGTGTTGATCAAAGCGTTGCTATCACATAACACATAATTGTGCATTGTTTGAGGAAGTGACGCAGTGTCCTCTCGTCACCTCTTGTGCAGACGGGCCAGGACTTCCTCGGAAACCTTTCCTCTGCGCTGAGGGGGCTAAACGCACATCAGAGGAGGTCACAGGTTGCCAGGGGGCCCCTTCTGGTTGGTGATACACTGTGGCCCTGGATTATTATGTTATTTAAGTATATCGGGCCTTTAAAAACAAGTTGGAGCATAAGTTTGAATGAGTTACAACCCTGTTCTAATAGCAGCGAATACTGTAAAGCATTGTTATTGACGATTAACTTCACAGTTAACACTATATTTATGTCAAACTTTGTTTGAGTCCTctaataaatattaatattcataaaaaatacACCGTTAAATGTGTAAATCTACTATTTGTCTTTGGGGTGATGTGACTttcaataaaaatgacaaca
>XR_005639690.1
ttacatgcaaacgtgcaaacgaagttttcTAAAATCTCCATTTTGGCCggatttttagaaataatcgttttctgtgattaaaaacacggttttcgtgtaaatgagaggccaaaccgcaggaaaatatctgcatcttcccttcgtgtaaactgGGCCTTCATGTTTTTTGGAGCTCATTCCACTTGTGTGCAGCATAGTATTGAACACGCTTTTTCCAAGTTCAGTGTGAACAAAAGAACTTGACGATTTGGAGCAGAGGCCGAGAAAAGCAGTATGCGTGACAGAATAATGACGGTCATCAAGAATGGGAGATATCTTATGACATTTGACCTGAAATTGAGACGTTTTGATGAATCTCAACCAGCAGTGTTGATCAAAGCGTTGCTATCACATAACACATAATTGTGCATTGTTTGAGGAAGTGACGCAGTGTCCTCTCGTCACCTCTTGTGCAGACGGGCCAGGACTTCCTCGGAAACCTTTCCTCTGCGCTGAGGGGGCTAAACGCACATCAGAGGAGGTCACAGGTTGCCAGGGGGCCCCTTCTGGTTGGTGATACACTGTGGCCCTGGATTATTATGTTATTTAAGTATATCGGGCCTTTAAAAACAAGTTGGAGCATAAGTTTGAATGAGTTACAACCCTGTTCTAATAGCAGCGAATACTGTAAAGCATTGTTATTGACGATTAACTTCACAGTTAACACTATATTTATGTCAAACTTTGTTTGAGTCCTctaataaatattaatattcataaaaaatacACCGTTAAATGTGTAAATCTACTATTTGTCTTTGGGGTGATGTGACTttcaataaaaatgacaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103297 False 777 lncRNA 0.43 4 30118008 30121089
XR_005639689.1 False 683 lncRNA 0.42 3 30118008 30121096
XR_005639690.1 True 832 lncRNA 0.40 3 30119598 30121096

Neighbor

gene id symbol gene type direction distance location
ntrk1 NA coding upstream 306219 29780179 ~ 29811789 (+)
LOC120562942 NA coding upstream 372827 29743009 ~ 29745181 (+)
LOC120562990 NA coding upstream 756883 29355633 ~ 29361125 (+)
LOC120562792 NA coding upstream 762466 29352141 ~ 29355542 (+)
LOC120562836 NA coding upstream 769185 29339254 ~ 29348823 (+)
pbx2 LOC103356852,LOC108245987,LOC101487230,LOC102193020,LOC100704063 coding downstream 4830 30125926 ~ 30133536 (+)
LOC120561633 NA coding downstream 15185 30136281 ~ 30137569 (+)
tap1 tap1 coding downstream 48918 30170014 ~ 30182142 (+)
brd2b LOC104928643,LOC103356858 coding downstream 65250 30186346 ~ 30205056 (+)
LOC120562234 NA coding downstream 84081 30205177 ~ 30212236 (+)
G77198 LOC103388947,LOC102796900,LOC101464846 non-coding upstream 219255 29894234 ~ 29898753 (+)
G77172 NA non-coding upstream 304467 29812931 ~ 29813541 (+)
G77114 bola1 non-coding upstream 533008 29582757 ~ 29585000 (+)
G77097 NA non-coding upstream 652456 29464612 ~ 29465552 (+)
G77033 NA non-coding upstream 678834 29433160 ~ 29439174 (+)
LOC120562235 NA non-coding downstream 95652 30216748 ~ 30218603 (+)
G77260 NA non-coding downstream 277180 30398276 ~ 30402704 (+)
G77399 NA non-coding downstream 855645 30976741 ~ 30977081 (+)
LOC120562708 NA non-coding downstream 857231 30978327 ~ 30988733 (+)
LOC120562710 NA non-coding downstream 894037 31015133 ~ 31016447 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 8463 30073937 ~ 30109545 (+)
G77028 LOC104942601 other upstream 705595 29404008 ~ 29412413 (+)
LOC120562177 LOC104942602,LOC104934039,LOC103362363 other upstream 727955 29384135 ~ 29390053 (+)
G77009 ubqln4 other upstream 787750 29328789 ~ 29330258 (+)
mex3a mex3a other upstream 829460 29276147 ~ 29288548 (+)
G77239 NA other downstream 2606 30123702 ~ 30124638 (+)
LOC120562443 NA other downstream 230399 30351495 ~ 30360588 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other downstream 566242 30687338 ~ 30731609 (+)
G77447 NA other downstream 1013733 31134829 ~ 31136146 (+)
G77682 tbx20 other downstream 1855222 31976318 ~ 31979909 (+)

Expression


Co-expression Network