LOC120562443


Basic Information

Item Value
gene id LOC120562443
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30351495 ~ 30360588 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU103340
ACTCTTATCAACCATAACACAATTACAACATACaccagcatatatatatatatatatatatatatatatagaggaaAATAGCGTCCCTCTACCACACGTCCCCTTGTGATGCcacaatatatgtatgtatgtacacacatatatatatatataggagcCATGTATATTACGTTTGTTTATGGTTTATAGTTTTCACCTATTACGTAACGTAGGATGTCATGGGGGTTGGTCTCCCAATCAGTCTATTTATACACCTGGACACCTGCATTGCGGAGGctagagagagagggtgagctggggtttttgcattttctgttgatcgCAAGTTTTCCACATTTAGGTTTACCTTTTTGCAGTATTTTCAGACAACTgg
>XM_039806156.1
atggcggacttcctgttgggtctAGGgagggagaggaaagcGCCAACTCACTTCCACCTCCTCACGACCCTGCAGCAGaaaaatgtttgcattCCTGATTTGCGCCTTGACTCTGCAGCAAGTGCACTCTGCCTGCGTTGTGCAGACATttgcacagaaaacacagaggttCAGAATGAGATTGTTGACCAACACAATGCCTTCAGGAGAGCGGTTCAGCCTACTGCTTCTGACATGCTGATAATGagctATAGTGAGGAGGTAGCAGTCAGTGCTCAGGCCTGGGTTGACAAATGTATTTTGGCTCATGGAGAACCCAGCACCCACATGCTCAATGGGTATGAATTGGGGTCAAATCTGTTCTATTCATCCTCACCTTACCCGTGGACGGAAGTCATTAAAGCCTGGCACAGTGAGGTGTCAAGCTACCTGTATCCCAAAGGCTCCACCAACGGCCAATCTATTGGTCactacacacaggtGGTGTGGAACAGCTCCTACAGAGTTGGCTGTGGAATGACATTGTGCCCGAACAACATCTATTTCTACGGCTGCAATTATTATCGAGCAGGAAACTTCAAGGGATGGCCACCTTATAAGGCTGGACCCCCATGTGCTTCCTGCCCCAATGACTGTGAAGACAAACTCTGCACCAACCCCTGTCCttacataaacaaatacatcAACTGTCCTACCTTGAGCGTCACGACTGGATGCGGCAATAAGCTGGTGAATGACTGGTGTCCTGCTTCATGCAACTGCACCAATCAAATCATTCCTATAGCCTAAACACAAGCCATTGAGTCTGCAAATTGTACTCAATCTACACATTTACATCTTTGTTGGTTCTCTGTCTAAGCTACTTTAACTGTAATCAATTTCCTGAAAGCTTATAATAATATACTCATGACGTAACCAAAGAACATATTTCTGAAAATATTGTGGTTTAGCACTGGTTGCCTTAAATTAAAGGGATgttttgggagtgttttaaatTATGTATCGCTAACCAAACCCCCTTGGGACACTTCGTCAGAGTTTTGTGAAATAGTCCCAGTGTTGCATGCACATCATGTTGGATTTCACTCAACCTGCAGGGCCATGCATGATGCCATATGGGGATATCTCCCACTCCGCGTTATGAATTGCAAGAAATGTGTCAGCACAAGCAAGAAATCCACCCAAGCTAAAGATAATATAAACCACAAATATGAATTCTACACAATCATACAAAAAAGACTACATTGGATATCAAGTGGTGTATGCTGTTTGTGTTATGGTTGATAAGAGTTAAACATCTCATGGCTTATGCTACAACTAAAGTAATGAGATGTTTAACTCTTATCAACCATAACACAATTACAACATACaccagcatatatatatatatatatatatatatatatagaggaaAATAGCGTCCCTCTACCACACGTCCCCTTGTGATGCcacaatatatgtatgtatgtacacacatatatatatatataggagcCATGTATATTACGTTTGTTTATGGTTTATAGTTTTCACCTATTACGTAACGTAGGATGTCATGGGGGTTGGTCTCCCAATCAGTCTATTTATACACCTGGACACCTGCATTGCGGAGGctagagagagagggtgagctggggtttttgcattttctgttgatcgCAAGTTTTCCACATTTAGGTTTACCTTTTTGCAGTATTTTCAGACAACTggattttgtttattaatgtttttttcccactttCAAATGAACAATAAATCCTCGAAAGCA

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU103340 False 373 lncRNA 0.37 1 30360158 30360530
XM_039806156.1 True 1768 mRNA 0.42 9 30351495 30360588

Neighbor

gene id symbol gene type direction distance location
LOC120561719 vmo1 coding upstream 127971 30218997 ~ 30223524 (+)
LOC120562442 NA coding upstream 134800 30212639 ~ 30216695 (+)
LOC120562234 NA coding upstream 139259 30205177 ~ 30212236 (+)
brd2b LOC104928643,LOC103356858 coding upstream 146439 30186346 ~ 30205056 (+)
tap1 tap1 coding upstream 169353 30170014 ~ 30182142 (+)
LOC120562225 LOC103356864 coding downstream 2119 30362707 ~ 30390432 (+)
si:dkey-82o10.4 NA coding downstream 344443 30705031 ~ 30713391 (+)
LOC120562210 LOC103357958,LOC107379173,LOC102233395,LOC103388353,LOC100705137,LOC103477709,LOC106523089 coding downstream 548442 30909030 ~ 30949188 (+)
LOC120562211 ube2e1,LOC106534515,LOC101480162,LOC103357960,LOC100705406 coding downstream 590645 30951233 ~ 30965417 (+)
nr1d2a LOC103375162 coding downstream 607993 30968581 ~ 30976242 (+)
LOC120562235 NA non-coding upstream 132892 30216748 ~ 30218603 (+)
LOC120562092 NA non-coding upstream 230399 30118008 ~ 30121096 (+)
G77198 LOC103388947,LOC102796900,LOC101464846 non-coding upstream 452742 29894234 ~ 29898753 (+)
G77172 NA non-coding upstream 537954 29812931 ~ 29813541 (+)
G77114 bola1 non-coding upstream 766495 29582757 ~ 29585000 (+)
G77260 NA non-coding downstream 37688 30398276 ~ 30402704 (+)
G77399 NA non-coding downstream 616153 30976741 ~ 30977081 (+)
LOC120562708 NA non-coding downstream 617739 30978327 ~ 30988733 (+)
LOC120562710 NA non-coding downstream 654545 31015133 ~ 31016447 (+)
G77555 NA non-coding downstream 1153548 31514136 ~ 31514561 (+)
G77239 NA other upstream 226857 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 241950 30073937 ~ 30109545 (+)
G77028 LOC104942601 other upstream 939082 29404008 ~ 29412413 (+)
LOC120562177 LOC104942602,LOC104934039,LOC103362363 other upstream 961442 29384135 ~ 29390053 (+)
G77009 ubqln4 other upstream 1021237 29328789 ~ 29330258 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other downstream 326750 30687338 ~ 30731609 (+)
G77447 NA other downstream 774241 31134829 ~ 31136146 (+)
G77682 tbx20 other downstream 1615730 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 2044545 32405133 ~ 32421472 (+)
G77888 NA other downstream 2739825 33100413 ~ 33101534 (+)

Expression


Co-expression Network