rab5ab (rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780)


Basic Information

Item Value
gene id rab5ab
gene name rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30687338 ~ 30731609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU103458
ttttttttttttttaattttttttttttttttttttttttttttttttactttttttaagaaGTGTATATCAGTATAATGGATGCATGTATCACTACAACgcctaaaacacatttttatctctTATTCAGTTTGAAGACTAACCCCAATTAAGAAAGATGAGCATGCGAGAAACCTGTGAACGTgtgattgtgttgtgtgtgaataTCCAAGTGCGAGTTGCCGATGAGAAGGTGTAGCCTCATTTGTCACTTCACAGGGTCGACTGGATGCGAATGGTGTTACCTGTAATATTCTTTGTGTGTGGGTTAAGTTATGCTCACAATCAGAAGAAAACCAAATTGTTCCCATCTTGAGACGCCTGGCTTTGCAGACTGTCTGTTGTGAGGCATCACTGTATTTAGACAGTGCCAGGAAAAGGACTGATGTGCAAACCAAGAATCCCTCCCTTCCACACATCTGTTACATAAGAAGACATCTTCATCCAAGGCTCCTAACGGAAAGTGCGGAAAATAAATTTGGTACTGTCCAGTTTTTAAATAATTggaaaatgcacacaaaaaaaggctttgagTATTGAGAAGAAAAACCGCCTTGATACACATCTGGCTTCCTTTTATGCACAACCATCTGTAGAGCAATATGGGCTTGTCACATTGCAATACACCATATTGAACAACAAAGTCTTCTTGGTatggaaaacatttttattttttttaaagtgtgggAACATCAGGAACCAACACCTTGAGGTCAACATGAGGCCCGTATGacaggatttttatttttattttggctttGCTATTTAACAAATGCTTTCAAATCCATCACAGAAGTTACATTTTTGACACTGATATGTTTtcacatgaaaaagaaaatcaacagGGAGCTTAAAGACTGTTGAACATCCTGCTTTTTGAGTTGCAAAGACTTGAACATACGGCTAGTTCTATGTTAAACTCTTGTCTTTGTCAATCCGCTCTGGCCAGTAGTAAACCTGCATCAATTTGGGTGATCTCAATCAAAggtagggggggagggggtagaATAGAGTTCAGCcagcacacaaacagaaaattggTCTACTACCTATTGTCACAAGTATGTGGAAAAACAAATATACTCTAATGTTGTTATAGGGTGCAATGTTGTCTTCTTCCTCCTTTAGCACAGCTTGCAGAGCTCCTGAGCGCACCAGGAAATGATCTAGGGATTCTGAACAATTGTACAGTTCAATAtaggtctgttttttttttttttcttcatcctaGACCTTGTCACAAACTGGTCAAATGTTAAGCAGTGGTGGTCTTTTTAGGTAAATGTAGTGTTATTAACAAAATCCCTCTCTCTTGTTACTTTTCTCCGAAAAGGTCCATGGTCATGTTTGAAAGGAACTTTTATTGCATTGCACAGTGTTGATCATGTTTTAATTAATGACTGCCCTTCGATTTTATATGACGGACTGTATTGGACTTGCTAACCTACAGCTATAAGCAGGTAGCATAATTAACCTTACTGGTGGTCTCTCATACAGCTCAATGAATTTTAATGATGTGAAACAGCATTACTAGTGATGGGCTGATCAGTTTTGAGTGTCTGAATACAACTTAATAAATTCAATAAAGAGG
>XM_039806815.1
TGTCGATTCCAGTCATACGATCTGTCATCATCCTTCGTACAATGCGAAAAGGGAAGTTGAAAGTGGGAGATCGCAGAGCCTTATGAAATTTAACGTTACGGTAGCTTGCTGGGTCATcgacacactgaacagacacTGAAGTGCAACAAAGATTGTCCTGGAGACACCATTCAAAATAACTAGCTTCCTCTTTTTGGTATTTTCTACAGTTATTCACAGTACCTCAGCGTCCAGAGGAAGAGACCGGGCAGTGTGACATGGCAAGTAGAGGCGGAGCTACACGACCCAATGGGCCAAACGCAGGCAACAAGATCTGCCAGTTCAAACTTGTGCTCTTAGGAGAGTCAGCTGTGGGGAAGTCGAGTCTCGTACTTCGTTTCGTCAAGGGACAGTTTCACGAATTCCAAGAGAGCACAATCGGAGCTGCCTTCCTGACTCAGACAGTATGTTTGGACGACACAACAGTCAAGTTTGAAATCTGGGACACAGCTGGTCAGGAGCGCTACCACAGTCTGGCTCCAATGTACTACAGAGGTGCCCAGGCAGCCATTGTGGTGTATGATATAACAAATGAGGAGTCATTTGTACGGGCTAAGAACTGGGTTAAAGAGCTTCAGAGACAAGCCAGTCCAAATATTGTAATAGCTCTGGCTGGGAACAAGGCTGATCTCGCAAACAAGAGAGCTCTGGACTTCCAGGATGCACAGTCATACGCAGATGATAACAGCTTGCTTTTTATGGAAACCTCAGCAAAGACCTCTATGAACGTGAATGAGATATTCATGGCCATTGCAAAGAAGCTACCCAAGAATGAGCCTCAAGCGGCCGGAGCCAGCAGTGGGCGGAACCGGGGAGTGGACCTGACGGAGACGGCTCAGCCCACCAGCCGTTCCTGCTGCAGTAACTAACCTGGCTCTTCCTGCTCATCCTtcccacacacccccccccccatcgcCCCTCCCAACTGAACATCTGGACATCGGGCTCCTTGGCTTCCTGACGTCAGACCTGACCGTCAACCTCACTCCCCTGGAATAGCTAAAAGACTCTGTATAGCTGCATTTCTaatacctattttttttttgttgatgttcttttgtttcttttttttttttttttactttttttaagaaGTGTATATCAGTATAATGGATGCATGTATCACTACAACgcctaaaacacatttttatctctTATTCAGTTTGAAGACTAACCCCAATTAAGAAAGATGAGCATGCGAGAAACCTGTGAACGTgtgattgtgttgtgtgtgaataTCCAAGTGCGAGTTGCCGATGAGAAGGTGTAGCCTCATTTGTCACTTCACAGGGTCGACTGGATGCGAATGGTGTTACCTGTAATATTCTTTGTGTGTGGGTTAAGTTATGCTCACAATCAGAAGAAAACCAAATTGTTCCCATCTTGAGACGCCTGGCTTTGCAGACTGTCTGTTGTGAGGCATCACTGTATTTAGACAGTGCCAGGAAAAGGACTGATGTGCAAACCAAGAATCCCTCCCTTCCACACATCTGTTACATAAGAAGACATCTTCATCCAAGGCTCCTAACGGAAAGTGCGGAAAATAAATTTGGTACTGTCCAGTTTTTAAATAATTggaaaatgcacacaaaaaaaggctttgagTATTGAGAAGAAAAACCGCCTTGATACACATCTGGCTTCCTTTTATGCACAACCATCTGTAGAGCAATATGGGCTTGTCACATTGCAATACACCATATTGAACAACAAAGTCTTCTTGGTatggaaaacatttttattttttttaaagtgtgggAACATCAGGAACCAACACCTTGAGGTCAACATGAGGCCCGTATGacaggatttttatttttattttggctttGCTATTTAACAAATGCTTTCAAATCCATCACAGAAGTTACATTTTTGACACTGATATGTTTtcacatgaaaaagaaaatcaacagGGAGCTTAAAGACTGTTGAACATCCTGCTTTTTGAGTTGCAAAGACTTGAACATACGGCTAGTTCTATGTTAAACTCTTGTCTTTGTCAATCCGCTCTGGCCAGTAGTAAACCTGCATCAATTTGGGTGATCTCAATCAAAggtagggggggagggggtagaATAGAGTTCAGCcagcacacaaacagaaaattggTCTACTACCTATTGTCACAAGTATGTGGAAAAACAAATATACTCTAATGTTGTTATAGGGTGCAATGTTGTCTTCTTCCTCCTTTAGCACAGCTTGCAGAGCTCCTGAGCGCACCAGGAAATGATCTAGGGATTCTGAACAATTGTACAGTTCAATAtaggtctgttttttttttttttcttcatcctaGACCTTGTCACAAACTGGTCAAATGTTAAGCAGTGGTGGTCTTTTTAGGTAAATGTAGTGTTATTAACAAAATCCCTCTCTCTTGTTACTTTTCTCCGAAAAGGTCCATGGTCATGTTTGAAAGGAACTTTTATTGCATTGCACAGTGTTGATCATGTTTTAATTAATGACTGCCCTTCGATTTTATATGACGGACTGTATTGGACTTGCTAACCTACAGCTATAAGCAGGTAGCATAATTAACCTTACTGGTGGTCTCTCATACAGCTCAATGAATTTTAATGATGTGAAACAGCATTACTAGTGATGGGCTGATCAGTTTTGAGTGTCTGAATACAACTTAATAAATTCAATAAAGAGGTCTCTTCTA
>XM_039806816.1
TGTCGATTCCAGTCATACGATCTGTCATCATCCTTCGTACAATGCGAAAAGGGAAGTTGAAAGTGGGAGATCGCAGAGCCTTATGAAATTTAACGTTACGGTAGCTTGCTGGGTCATcgacacactgaacagacacTGAAGTGCAACAAAGATTGTCCTGGAGACACCATTCAAAATAACTAGCTTCCTCTTTTTGGTAGGTATTTTCTACAGTTATTCACAGTACCTCAGCGTCCAGAGGAAGAGACCGGGCAGTGTGACATGGCAAGTAGAGGCGGAGCTACACGACCCAATGGGCCAAACGCAGGCAACAAGATCTGCCAGTTCAAACTTGTGCTCTTAGGAGAGTCAGCTGTGGGGAAGTCGAGTCTCGTACTTCGTTTCGTCAAGGGACAGTTTCACGAATTCCAAGAGAGCACAATCGGAGCTGCCTTCCTGACTCAGACAGTATGTTTGGACGACACAACAGTCAAGTTTGAAATCTGGGACACAGCTGGTCAGGAGCGCTACCACAGTCTGGCTCCAATGTACTACAGAGGTGCCCAGGCAGCCATTGTGGTGTATGATATAACAAATGAGGAGTCATTTGTACGGGCTAAGAACTGGGTTAAAGAGCTTCAGAGACAAGCCAGTCCAAATATTGTAATAGCTCTGGCTGGGAACAAGGCTGATCTCGCAAACAAGAGAGCTCTGGACTTCCAGGATGCACAGTCATACGCAGATGATAACAGCTTGCTTTTTATGGAAACCTCAGCAAAGACCTCTATGAACGTGAATGAGATATTCATGGCCATTGCAAAGAAGCTACCCAAGAATGAGCCTCAAGCGGCCGGAGCCAGCAGTGGGCGGAACCGGGGAGTGGACCTGACGGAGACGGCTCAGCCCACCAGCCGTTCCTGCTGCAGTAACTAACCTGGCTCTTCCTGCTCATCCTtcccacacacccccccccccatcgcCCCTCCCAACTGAACATCTGGACATCGGGCTCCTTGGCTTCCTGACGTCAGACCTGACCGTCAACCTCACTCCCCTGGAATAGCTAAAAGACTCTGTATAGCTGCATTTCTaatacctattttttttttgttgatgttcttttgtttcttttttttttttttttactttttttaagaaGTGTATATCAGTATAATGGATGCATGTATCACTACAACgcctaaaacacatttttatctctTATTCAGTTTGAAGACTAACCCCAATTAAGAAAGATGAGCATGCGAGAAACCTGTGAACGTgtgattgtgttgtgtgtgaataTCCAAGTGCGAGTTGCCGATGAGAAGGTGTAGCCTCATTTGTCACTTCACAGGGTCGACTGGATGCGAATGGTGTTACCTGTAATATTCTTTGTGTGTGGGTTAAGTTATGCTCACAATCAGAAGAAAACCAAATTGTTCCCATCTTGAGACGCCTGGCTTTGCAGACTGTCTGTTGTGAGGCATCACTGTATTTAGACAGTGCCAGGAAAAGGACTGATGTGCAAACCAAGAATCCCTCCCTTCCACACATCTGTTACATAAGAAGACATCTTCATCCAAGGCTCCTAACGGAAAGTGCGGAAAATAAATTTGGTACTGTCCAGTTTTTAAATAATTggaaaatgcacacaaaaaaaggctttgagTATTGAGAAGAAAAACCGCCTTGATACACATCTGGCTTCCTTTTATGCACAACCATCTGTAGAGCAATATGGGCTTGTCACATTGCAATACACCATATTGAACAACAAAGTCTTCTTGGTatggaaaacatttttattttttttaaagtgtgggAACATCAGGAACCAACACCTTGAGGTCAACATGAGGCCCGTATGacaggatttttatttttattttggctttGCTATTTAACAAATGCTTTCAAATCCATCACAGAAGTTACATTTTTGACACTGATATGTTTtcacatgaaaaagaaaatcaacagGGAGCTTAAAGACTGTTGAACATCCTGCTTTTTGAGTTGCAAAGACTTGAACATACGGCTAGTTCTATGTTAAACTCTTGTCTTTGTCAATCCGCTCTGGCCAGTAGTAAACCTGCATCAATTTGGGTGATCTCAATCAAAggtagggggggagggggtagaATAGAGTTCAGCcagcacacaaacagaaaattggTCTACTACCTATTGTCACAAGTATGTGGAAAAACAAATATACTCTAATGTTGTTATAGGGTGCAATGTTGTCTTCTTCCTCCTTTAGCACAGCTTGCAGAGCTCCTGAGCGCACCAGGAAATGATCTAGGGATTCTGAACAATTGTACAGTTCAATAtaggtctgttttttttttttttcttcatcctaGACCTTGTCACAAACTGGTCAAATGTTAAGCAGTGGTGGTCTTTTTAGGTAAATGTAGTGTTATTAACAAAATCCCTCTCTCTTGTTACTTTTCTCCGAAAAGGTCCATGGTCATGTTTGAAAGGAACTTTTATTGCATTGCACAGTGTTGATCATGTTTTAATTAATGACTGCCCTTCGATTTTATATGACGGACTGTATTGGACTTGCTAACCTACAGCTATAAGCAGGTAGCATAATTAACCTTACTGGTGGTCTCTCATACAGCTCAATGAATTTTAATGATGTGAAACAGCATTACTAGTGATGGGCTGATCAGTTTTGAGTGTCTGAATACAACTTAATAAATTCAATAAAGAGGTCTCTTCTA

Function

symbol description
rab5a Enables GDP binding activity; GTP binding activity; and GTPase activity. Involved in several processes, including amyloid-beta clearance by transcytosis; early endosome to late endosome transport; and regulation of exocytosis. Located in several cellular components, including cytoplasmic side of early endosome membrane; nucleoplasm; and terminal bouton.

NR:

description
PREDICTED: ras-related protein Rab-5A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07887 RAB5A; Ras-related protein Rab-5A

RNA

RNA id representative length rna type GC content exon number start site end site
TU103458 False 1630 lncRNA 0.37 2 30687338 30731600
XM_039806815.1 False 2710 mRNA 0.43 6 30723097 30731609
XM_039806816.1 True 2714 mRNA 0.43 6 30723097 30731609

Neighbor

gene id symbol gene type direction distance location
LOC120562225 LOC103356864 coding upstream 296906 30362707 ~ 30390432 (+)
LOC120561719 vmo1 coding upstream 463814 30218997 ~ 30223524 (+)
LOC120562442 NA coding upstream 470643 30212639 ~ 30216695 (+)
LOC120562234 NA coding upstream 475102 30205177 ~ 30212236 (+)
brd2b LOC104928643,LOC103356858 coding upstream 482282 30186346 ~ 30205056 (+)
LOC120562210 LOC103357958,LOC107379173,LOC102233395,LOC103388353,LOC100705137,LOC103477709,LOC106523089 coding downstream 177421 30909030 ~ 30949188 (+)
LOC120562211 ube2e1,LOC106534515,LOC101480162,LOC103357960,LOC100705406 coding downstream 219624 30951233 ~ 30965417 (+)
nr1d2a LOC103375162 coding downstream 236972 30968581 ~ 30976242 (+)
LOC120562709 NA coding downstream 257154 30988763 ~ 31008397 (+)
LOC120561533 rarb,LOC102205684,LOC101478141 coding downstream 293375 31024984 ~ 31044407 (+)
G77260 NA non-coding upstream 284634 30398276 ~ 30402704 (+)
LOC120562235 NA non-coding upstream 468735 30216748 ~ 30218603 (+)
LOC120562092 NA non-coding upstream 566242 30118008 ~ 30121096 (+)
G77198 LOC103388947,LOC102796900,LOC101464846 non-coding upstream 788585 29894234 ~ 29898753 (+)
G77172 NA non-coding upstream 873797 29812931 ~ 29813541 (+)
G77399 NA non-coding downstream 245132 30976741 ~ 30977081 (+)
LOC120562708 NA non-coding downstream 246718 30978327 ~ 30988733 (+)
LOC120562710 NA non-coding downstream 283524 31015133 ~ 31016447 (+)
G77555 NA non-coding downstream 782527 31514136 ~ 31514561 (+)
G77554 NA non-coding downstream 786154 31517763 ~ 31518618 (+)
LOC120562443 NA other upstream 326750 30351495 ~ 30360588 (+)
G77239 NA other upstream 562700 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 577793 30073937 ~ 30109545 (+)
G77028 LOC104942601 other upstream 1274925 29404008 ~ 29412413 (+)
LOC120562177 LOC104942602,LOC104934039,LOC103362363 other upstream 1297285 29384135 ~ 29390053 (+)
G77447 NA other downstream 403220 31134829 ~ 31136146 (+)
G77682 tbx20 other downstream 1244709 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 1673524 32405133 ~ 32421472 (+)
G77888 NA other downstream 2368804 33100413 ~ 33101534 (+)
bmper bmper other downstream 3094478 33826087 ~ 33879132 (+)

Expression


Co-expression Network