G77682 (tbx20)


Basic Information

Item Value
gene id G77682
gene name tbx20
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 31976318 ~ 31979909 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU103881
ggctttttatttttaatatttcatcCCATAAACTCCATACTAGAAGATACAGAGaattccttgaatggcttagtagaagagaagaaaaagtctCAGTATCTGCTTTGGCTGAAAGAAATTCATCACTGAATGCGTGATacagaaaccttttataaatatgtttcagttgtttttccAATGATTTCAtgatttcatttatttctgacAATCTGTGATTCATTGAGAGAGAAAAGTGAACATAATGGCAgtcagtgaaaaaaaagaactcaAAGAGTTTGGGTGGTGATATATATTTCTCAAGGTTTACaaataactattttttttttttaaatgcggcatagtacattacacattatttcCAGAgagcaaaataaatatattgcaCTTAAAAATCATCAAAACACAATCTCGTTCGGTGTCGTATATTATGGCATACAAAAGAaagctttttgtttaaaaaaaaacaacattattttGAGTGGTAAGTTGggactatgtgtgtgttttaaaaggggaaaaaagtgttttacgTACTGATGGAAATCGACATTCAGTTGATTTGTACAAACAAAGCTCAGGTTTCACATCAGTGAAGGAACAAGAGCTGATCTCCAAAGCAAAGAAAAGGAAGTTCAAAATACAAGATTTCCTCAATAAACCGATGATGAAAAATAACTGCTTGCACATTATGGATATGCAAGGGTTCAGAACAGAAGGATTTTGTCCATATATTTCACTGCAACGGACTTCATATGATGTAAAATGTGCCCAGCTGGGACATTGACAGTGTTTGTGAAACCAGCTCATCTATCACTTTCATACATTTTGTTTCGAATTCTGCAAAGAGCAGCATTGGAAGTGTCGTCATCCATCACACGCACCTGAATCCACACAACGCTCCACTTCCGATGTGTCAAAATGTTGCCTTCATGACTCAAGAAGCTGAAATATTTAACTGTGTTTCTTTGGATTTTGTGCATAAAACGTGACAGCCTCACTGCAAAAAGTCTCCATAAATCAGAAATGTGAGTCTCTATCATGAAACAAGTAACTTGAGTGTTACTCGAATTGAGACTACGGCTGATTTGTGTTGGAAACAGTCTGAATAAATCggaaaaaacaagcaattttatctatatttatatttatataatttatatatctaCAATAAGTTAATATCATCTAATATATAGGTCTAGCTCTAGGTTTTAGGACTCAATTATAGACAACAGCTGCTTGATAAAATGGAGAGTTATTGCTGTGGAGTTCTTGGATTGAATataaacataatatatattaaacataataaaaatgtattcaaaaacaACAGTATTAATTGTCCCTAGGACCATCTCACATGTGTAGCTTGTATTTCTTCTTAATTTTTCAAATAAATTACTCTAACTACTCCACCAGTGAGCTGCCATTTttatgcacctgcacccatacGGAGTGCGAGTCGACTCCGGCGGCTTCCAGCTTCTCCCTGtctgcatgttttaaatgagACCGCAGAGAGCCATTATTTTCCAGGTGTGGACGCCCTGTTGGCACGCTCTGATGCAGCCATGAATCAGCTCGGCAACACCTCTAAAGACCAACTGCTAAAAGGCTGCAGTCGACAGTCGGCAACTGAAGACGGCGTGGAGACAAACCTGGCGTTTCTACCCAGACGCTGCGGTCTGTTTGCCGTGAAGTCCCACTGCTGTTACCCTTCAGATGTTTTCTGAACATTAAAGCGATTACTATGCATTGGCCACTGACTTCAAATCCTACCAGTGGAAACAGATGTATGATGGCTACCATTTATGGCTGGTTTCACACAGTACATTAAAATATGATACTCTAAAACTGATGATTTGAACTCAACACATTTTGTAATTGATTCCCTCTTAACCCGGTCACACCAGGAAGTAACACAACGAAATTCATCCGCACGTTTTCGCAGAATGGGCGGTGTTTGAGGCTTGGTGACCTGACGGCCAACACGCTAGCGCTAGTTAGTCACAATAACCCACAGCGTTTCTTTGTATTTTCTCTGTATTGGACAGCTAttcaagctagctagctagctagtgaacAGTCAGTTCAGTAGCTCGTTGGCCAGTTTGCTAACACACAGATAATTCAAAAGGCATATTTGTACCATCAACTCCTGTCTCATATCTATCTGCAATCCATGCCTCCTTTGTGGAGAAGTTAACACTCCAGCAGAGGAGCTTAAATAAAAATTGTATGGAGCAACACAGCTTATAAGCTACGATAGCTTCCAACATTTTGATGCCCAAACTTCGCCATTATAAATGCTGATGTGACCGGGCCTTTAAAGTATGCAAACAGCCTTCACCCCTGTTGCAGGTTAGAGCTTATTCATCCCATATTATTCCATATAGTAAGTCCAGCGTGTTTGTCTACTGCAGTCAGCATGCGTcctatgattatttttttttgcactctacagtgagtaaatgttgcattttcAAGTTTGTACAATGCTCTTTAACGTGTTTCTGACATTATTTTCAACAGAGCGTGAAGTCTGAACTGTACATATGGCTGGTTTCTAGAAAACAGAGGAAAGCTGAGATTCCGATATGCTGAAATGTTCACAGACTCCGACTACGCCTCGGTgtccaacatactgtagcatcGGACGAGTCTCTCCGAAAATCTTCATCTTAGGTTGCACTGGTGGATCACACAGCAACCTGCCGTCTTTAAAGCCCCGGTGGAGACCCTGTAGGGACTGTTACACCCGCAGAGGGTGTCtaaataatggttaaaataagtTTAGGTTGAGGATCCACTTTCTGTTCTCCAAGGGCCAAGACCAAACATGCTCCTTGTATCGTCTCGCGTCAGGCTTTATAGTTTGTTTTGAGGTTGTAAGTGTTTGTACAATGTCACTAAAGGGTTCATAGAAACCACAGGACCTGCTGATGTGTCCGCAGGTCCTGTGGAGGCGCCGCAgtccttttttcttttggtgTGGATTTTCTGGATCAGTGCGCCACCTTCTCTTCACCTCACTCGCAGCAGGTGAACTATTTACAAAGACCAGGGGGAAAGATACAAACAGGATGAGGAGTGATGAGTCGGAGTGGAGAAATAACTGGTTGCGCTGGATTGGGGATCAGAGCGAAGATCGCCCGTCTCCTCCCCAGGACGGAGTCATACAAAGGGCGTCATGACCGTGGAGGTGTGGCGGAGTCCCTGGATGGCGGCATAGGGCCCCTGCTGGAAGTAGTGGTGGTAGCGGGGCATGTGGAAGGAAGGGAAGGACGGCCCACTGCCCTGCATGGTTCCAGCCAGAGCGGTGGGCGTCAGCGGCATGCCCAGTCGGCTGTAGGGGGGCAGGGAGCCCTGGATGGGGTGGGGCAGGGAGGCGGCGCCGGTGCCCATGGCCGACAGGGACTGTGGGTGCTGGAAGCCCGAGAAGCCCGAAGTGGTGGTGACCCAGGAGCTCAGGGAGAGGTTGTCTGAGGCGGTGAACGCCGAACCTGCAGGAAACAGGGGGCAGATGTAAA

Function

symbol description
tbx20 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including circulatory system development; cloaca development; and regulation of cardiac muscle cell proliferation. Predicted to be located in nucleus. Is expressed in several structures, including cardiovascular system; digestive system; integument; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in atrial heart septal defect 4. Orthologous to human TBX20 (T-box transcription factor 20).

NR:

description
PREDICTED: T-box transcription factor TBX20 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103881 True 3527 TUCP 0.43 2 31976318 31979909

Neighbor

gene id symbol gene type direction distance location
herpud2 LOC103361314 coding upstream 16920 31949622 ~ 31959398 (+)
pkdc LOC102076377,LOC101468599,LOC102793757,LOC102209191,LOC102303972 coding upstream 28545 31943411 ~ 31947773 (+)
LOC120562640 NA coding upstream 44271 31917746 ~ 31932047 (+)
arl4aa arl4a,LOC103374731,LOC104928894 coding upstream 471656 31500830 ~ 31504662 (+)
si:dkey-30e9.6 NA coding upstream 477832 31497043 ~ 31498486 (+)
dpy19l1l dpy19l1,LOC102792675 coding downstream 110249 32090158 ~ 32124377 (+)
LOC120562212 NA coding downstream 165483 32145392 ~ 32149331 (+)
smarcc1a smarcc1 coding downstream 186410 32166319 ~ 32193048 (+)
LOC120562445 NA coding downstream 224845 32204754 ~ 32212177 (+)
cspg5a cspg5,LOC103364230 coding downstream 249094 32229003 ~ 32293702 (+)
G77669 NA non-coding upstream 33524 31942035 ~ 31942794 (+)
G77666 NA non-coding upstream 41256 31933085 ~ 31935062 (+)
G77593 NA non-coding upstream 353152 31622827 ~ 31623166 (+)
G77592 NA non-coding upstream 362003 31612481 ~ 31614315 (+)
G77591 NA non-coding upstream 365007 31611058 ~ 31611311 (+)
G77683 NA non-coding downstream 142 31980051 ~ 31982392 (+)
G77684 NA non-coding downstream 2559 31982468 ~ 31982716 (+)
G77685 NA non-coding downstream 5557 31985466 ~ 31985740 (+)
G77687 NA non-coding downstream 9977 31989886 ~ 31990370 (+)
G77722 LOC102207529,LOC102306104 non-coding downstream 158868 32138777 ~ 32140143 (+)
G77447 NA other upstream 840172 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 1244709 30687338 ~ 30731609 (+)
LOC120562443 NA other upstream 1615730 30351495 ~ 30360588 (+)
G77239 NA other upstream 1851680 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 1866773 30073937 ~ 30109545 (+)
LOC120561717 NA other downstream 425224 32405133 ~ 32421472 (+)
G77888 NA other downstream 1120504 33100413 ~ 33101534 (+)
bmper bmper other downstream 1846178 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 1914451 33894360 ~ 33904285 (+)
sh3bp5b sh3bp5,LOC102783023 other downstream 2010633 33990542 ~ 34042648 (+)

Expression


Co-expression Network