LOC120561540 (LOC104957162,LOC106526711,LOC102237165)


Basic Information

Item Value
gene id LOC120561540
gene name LOC104957162,LOC106526711,LOC102237165
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32425365 ~ 32434867 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU104072
ATTGCTATGGCAACAGGTTGCCAGTAGCGACTACAtccctgcctgtgtgtctgcgGGGATGAGCGGCGCGTCAGGACGAGAAGAAAACAACAAGCGGAGCAGCAGAGGGTTTGGTCTGCGCGGGCTcagtcagcaaaaaaaaaacagaaaaataaccactgtcaggcttttttttctgtcataaAGTGAGGAGCCCCGCGGCCAGCAAGGACGGTCGTTGTTGTTGCTTCGAGTCTGGAAACAGAAAGGTCGGATGTGCCAGGATGGAGAGCCACCGCTGACGGAGATTCCCGAGCTCCACTGATAACAACAGGTCTTATCCACTGAGCCCATCTTCCCCTCCCAAATCTTTAAGCAACCGACAAAGAGCTGGAGCCGAGACGGTCAAGCATGGATGTGCCCAGGATGGCTGAAGGCCTCTTCAGCAGCACGCTGTCCTCGTCAGGCGGCGGCCACCATGTGTCTTCCTACCTGACGCTGGAGCAAAAGGCCGCCTTCGTCTTTGTGCTGCTGCTCTTCATCTTCCTGGCCCTGCTCATCGTGCGCTGCTTCCGCATCCTGCTGGACCCGTACCGCAGCATGCCCTCGTCCAACTGGACGGACCACACCGAGAAGGACACGTTCGATTACCGCATCGTCTGAGGAGCCCTGAGCATGCATTACATTTACAcaaattagaagaaaaaaaaagactaatttgATGTTTAAAGAGCACTTTGGCCCGAAGAACAGATGACTGCCGATTCACCAGGAAAACAACAGCTTTTAGAGAAATCTTCTGAAAGCTTGACAGAAAAGAATTTCGATGGCAGATTGTCGTCGAAATGAGCGCTAACCAGAGTTCAACTTCAGCTTCTCCCTGCCAAATCTGAAAATTCTGAACTGTCACAAGAAAACCAGAACTATGCTATGAAGATTAGCGATCAAACCCTCAGTCCAAGCGATGCACCAAAACCAGTTAGGGTTACCCATAACTTTCATTCCCTTCCATCAGTTCCCTTGTGGACTACCTcgttcctcctcctccatctcgtGTGTGGAAGACTTAGTGTTTTCTCACATGTCACACAGGGTCGAATATCTTATGAGGTCCAAGCAGTTTGATGATAACAGTGTTTACATCTAGTCATGTTTACGTCCTTAGATTTTTATTGATAATGTAGACAatcagtgtttaaaatagttggTGAAAAAACGAGTTACTAGTTGAGGTTGTTGAGATCTTTCGTTTTTAGCGTATTTTGTCTTAATTTGTGGACAGACACGAGAGGTCCAAAAGACTGCTATGATTCAGGCGAAGAGGAATTTAATGCCTTATGTCTTTGTCAGATATATGGATGGTTGTTACCTTCTAGACAGTTGGGTAAAACTGGTATCAAGGTCCTAAAGCAGGTTAAATAATCACAAAGAAGGAAACTGTCGTGGAAAAAGTTCTCCCTTTAATGTTTTGGAAAGGTTTGGACCGATAGGTGCGAGCTGCCAGTATCTACAAgtgttctgtgtgtatgtgatacAAATCAATTTGTCCTTTAAGTCCTGGAGGGCCCTTCCGGTGTCCACGTCTTTTATAGCGTCGACAGCCAAAAGAGGTAGTGAAGAAAACAACGTTTACTGTGCTGTACCGTGtgcctaatttgaaaaaaagttgatgttttaggaaaaagaaagaatgtGGGTTCAAATGTCTGTCtttaaatgtagtttttttttttgtgtagtgcccgtttaaaaaaaaactgaaacagcATTTTACTGCCTGCGGTTGGTATATTGACAGTTGGTGTGCCAGATCTGCAGAGTgttgatgatgaagatgacgaGGCATTTTCACATCAAACCCTTTACAAACTGATGTGGCTCTTTTGTCGGGCAATTTTTCAACTGTGCGCCTTATAGTGTAGACTGTTTACAGCATCGTAGGTAGCGGAGACGCTGGAAATCAGCCAACACTGATGCGACTGTGTCTTTGCACTTCACGGAGATGTCATACACCCTGctaaaaaaataagaagaaggaaaaaaacattccctGTTCTTGTTCCTGCCGGGACAGGAAGCGAACTCTGACCCTTTCGGCGACGTGTGATGTGCTTGTGATCTGCTGTGGCCTTTTCCTACCTATCGCAGATGTTGCGGTGTTGTGCTGAGGTgatgtgtccccccccccttctcccccCGCGCATGTAGTATTCTCTCCGTGCATGATAAATGGTGAAGCGCTTTGATCCTGATGTTGTAGCTGTGGGTCAGTTGCTCAAACACCTATTTCCTTTCTGTACTGGGGCCTTTTGTTTCAATCAGTTTTTCGCCTGGAGCCA
>XM_039804666.1
ataagcgtattaaacatgaataacaaacaataaataccaaaacagagacaaatatttacaaaatagtTGTTCCATTCCATTCTGCTCCATCATGGTtgttgtttccagtctttgtgctaatgTAGCTAACTATGTCTTGGCTAAAGCTTCATATTaaccgtacagacatgagagagcTATATTAAATTTAGAGCTATAGGGGTGTGCATATAtaaagaaattatttattttagcttTATTTAAGAAAAGATGAACTCCTAAAAACACATCCTCTTTTACTGCAGTTGAGCTTCGGATAATATCCACCATAATGTAACCCTCGGACATATgtagaaaagtagaaaaaaaaatctcattacTGGTTAAAATGTGGGTAGTCATTGGATTCACTAATTCTGTCTAAGCACCTGCAGTCCTCGCTGACTTCCACCAGGTGGAAACGCTGCACAGCATTTGGATGCTGACAGTGGACATTACGTAAGCTGAGATTTCCCCCAAAGTGCTCTGCACAGTCACTCTCTGACCTCTTTGTGGACTGTCACGTCCTTCCGGAGCCGCTGAGGCCATTAGCATCTGTCAGGATTAGACAGCAAAGACTCTGAagcttgtcacacacacacacacacacaaaaaaaaaacatacaagggAGTGTTTTCTGCTTGAGACACCCATCCCACTTTAAACTCAACATTGTGGCTGTCCGCATCCAGCCTGAGCAactcattcaattcaattcaattttatttatagtgtgaAATCATAACTGGAGTTATcccaggacactttacagatagagtatgtCTACATCACACTATAATTTGCAAAGACCaaacccccccacccacacacacacacacacacacacacacacacccccaatcCACCCACTcaccccaagagcaagcatttgtcCACGCAGCAACGTCTGTGTTAATGTCTTTTCCTGGATACTGTTTATTGTAAAGCCTATTGTTTTGCAGAATATGCTACCAATTTAGCATCATAACAGTGTGTTTTATATTAAGATAATAAAATATCATAAAGATCACTGTAAACTCATCGTTGACCTCCACTGATGTCTTTCTGAGAATGctcctttttttcattgttATAGCCTATTTGTGATTATGAATCAATGTACTGACATAATCTATGAGGGCCACACCTTTCTCCTCATCCGCTTGGCACATTTTAGCCTATACCTGGAGGATTGCTATGGCAACAGGTTGCCAGTAGCGACTACAtccctgcctgtgtgtctgcgGGGATGAGCGGCGCGTCAGGACGAGAAGAAAACAACAAGCGGAGCAGCAGAGGGTTTGGTCTGCGCGGGCTcagtcagcaaaaaaaaaacagaaaaataaccactgtcaggcttttttttctgtcataaAGTGAGGAGCCCCGCGGCCAGCAAGGACGGTCGTTGTTGTTGCTTCGAGTCTGGAAACAGAAAGGTCGGATGTGCCAGGATGGAGAGCCACCGCTGACGGAGATTCCCGAGCTCCACTGATAACAACAGGTCTTATCCACTGAGCCCATCTTCCCCTCCCAAATCTTTAAGCAACCGACAAAGAGCTGGAGCCGAGACGGTCAAGCATGGATGTGCCCAGGATGGCTGAAGGCCTCTTCAGCAGCACGCTGTCCTCGTCAGGCGGCGGCCACCATGTGTCTTCCTACCTGACGCTGGAGCAAAAGGCCGCCTTCGTCTTTGTGCTGCTGCTCTTCATCTTCCTGGCCCTGCTCATCGTGCGCTGCTTCCGCATCCTGCTGGACCCGTACCGCAGCATGCCCTCGTCCAACTGGACGGACCACACCGAGAAGGACACGTTCGATTACCGCATCGTCTGAGGAGCCCTGAGCATGCATTACATTTACAcaaattagaagaaaaaaaaagactaatttgATGTTTAAAGAGCACTTTGGCCCGAAGAACAGATGACTGCCGATTCACCAGGAAAACAACAGCTTTTAGAGAAATCTTCTGAAAGCTTGACAGAAAAGAATTTCGATGGCAGATTGTCGTCGAAATGAGCGCTAACCAGAGTTCAACTTCAGCTTCTCCCTGCCAAATCTGAAAATTCTGAACTGTCACAAGAAAACCAGAACTATGCTATGAAGATTAGCGATCAAACCCTCAGTCCAAGCGATGCACCAAAACCAGTTAGGGTTACCCATAACTTTCATTCCCTTCCATCAGTTCCCTTGTGGACTACCTcgttcctcctcctccatctcgtGTGTGGAAGACTTAGTGTTTTCTCACATGTCACACAGGGTCGAATATCTTATGAGGTCCAAGCAGTTTGATGATAACAGTGTTTACATCTAGTCATGTTTACGTCCTTAGATTTTTATTGATAATGTAGACAatcagtgtttaaaatagttggTGAAAAAACGAGTTACTAGTTGAGGTTGTTGAGATCTTTCGTTTTTAGCGTATTTTGTCTTAATTTGTGGACAGACACGAGAGGTCCAAAAGACTGCTATGATTCAGGCGAAGAGGAATTTAATGCCTTATGTCTTTGTCAGATATATGGATGGTTGTTACCTTCTAGACAGTTGGGTAAAACTGGTATCAAGGTCCTAAAGCAGGTTAAATAATCACAAAGAAGGAAACTGTCGTGGAAAAAGTTCTCCCTTTAATGTTTTGGAAAGGTTTGGACCGATAGGTGCGAGCTGCCAGTATCTACAAgtgttctgtgtgtatgtgatacAAATCAATTTGTCCTTTAAGTCCTGGAGGGCCCTTCCGGTGTCCACGTCTTTTATAGCGTCGACAGCCAAAAGAGGTAGTGAAGAAAACAACGTTTACTGTGCTGTACCGTGtgcctaatttgaaaaaaagttgatgttttaggaaaaagaaagaatgtGGGTTCAAATGTCTGTCtttaaatgtagtttttttttttgtgtagtgcccgtttaaaaaaaaactgaaacagcATTTTACTGCCTGCGGTTGGTATATTGACAGTTGGTGTGCCAGATCTGCAGAGTgttgatgatgaagatgacgaGGCATTTTCACATCAAACCCTTTACAAACTGATGTGGCTCTTTTGTCGGGCAATTTTTCAACTGTGCGCCTTATAGTGTAGACTGTTTACAGCATCGTAGGTAGCGGAGACGCTGGAAATCAGCCAACACTGATGCGACTGTGTCTTTGCACTTCACGGAGATGTCATACACCCTGctaaaaaaataagaagaaggaaaaaaacattccctGTTCTTGTTCCTGCCGGGACAGGAAGCGAACTCTGACCCTTTCGGCGACGTGTGATGTGCTTGTGATCTGCTGTGGCCTTTTCCTACCTATCGCAGATGTTGCGGTGTTGTGCTGAGGTgatgtgtccccccccccttctcccccCGCGCATGTAGTATTCTCTCCGTGCATGATAAATGGTGAAGCGCTTTGATCCTGATGTTGTAGCTGTGGGTCAGTTGCTCAAACACCTATTTCCTTTCTGTACTGGGGCCTTTTGTTTCAATCAGTTTTTCGCCTGGAGCCACTGTTCTTTTTCTAATAAAAATGTTCAGAGTG

Function

NR:

description
PREDICTED: cortexin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104072 False 2318 TUCP 0.46 2 32425397 32433657
XM_039804666.1 True 3560 mRNA 0.44 2 32425365 32434867

Neighbor

gene id symbol gene type direction distance location
ptpn23a ptpn23 coding downstream 21943 32376916 ~ 32403422 (-)
LOC120562214 NA coding downstream 260849 32161017 ~ 32164516 (-)
LOC120562213 NA coding downstream 282087 32138778 ~ 32143278 (-)
LOC120562215 NA coding downstream 288459 32127422 ~ 32136906 (-)
ankmy2a ankmy2,LOC102794045 coding downstream 482601 31933067 ~ 31942764 (-)
lysmd1 NA coding upstream 467149 32902016 ~ 32905473 (-)
tmod4 tmod4,LOC102789303 coding upstream 480453 32915320 ~ 32946228 (-)
mcl1b NA coding upstream 583838 33018705 ~ 33021075 (-)
LOC120562448 NA coding upstream 680350 33115217 ~ 33130559 (-)
ctsk ctsk,LOC107086845,LOC106920373,LOC103156711,LOC106949137,LOC103477640 coding upstream 699243 33134110 ~ 33153043 (-)
G77829 NA non-coding downstream 20727 32404292 ~ 32404638 (-)
G77793 cspg5,LOC103364230,LOC102791138 non-coding downstream 130748 32227268 ~ 32294617 (-)
G77797 NA non-coding downstream 174924 32249924 ~ 32250441 (-)
G77741 smarcc1 non-coding downstream 250868 32172051 ~ 32174497 (-)
G77720 NA non-coding downstream 298035 32124664 ~ 32127330 (-)
G77847 NA non-coding upstream 31305 32466172 ~ 32466730 (-)
G77850 NA non-coding upstream 253545 32688412 ~ 32688631 (-)
LOC120562114 NA non-coding upstream 349378 32784245 ~ 32818546 (-)
G77910 NA non-coding upstream 432279 32867146 ~ 32894790 (-)
G77949 NA non-coding upstream 664949 33099816 ~ 33101537 (-)
tbx20 tbx20 other downstream 435000 31976484 ~ 31990365 (-)
LOC120562592 dgkb,LOC102796570 other downstream 798484 31612436 ~ 31626881 (-)
G77573 NA other downstream 906329 31516455 ~ 31519036 (-)
LOC120561969 thsd7a,LOC103477695 other downstream 1028862 31239787 ~ 31396503 (-)
LOC120561999 NA other downstream 1311273 31109791 ~ 31114092 (-)
sema6e sema6c,LOC103360390,LOC104932808,LOC100704625 other upstream 45777 32480644 ~ 32644969 (-)
ensab ensa,LOC103369031,LOC100695493,LOC101487776,LOC102787866,LOC102291346,LOC102199757,LOC108243249 other upstream 587231 33022098 ~ 33032895 (-)
LOC120561932 NA other upstream 1155654 33590521 ~ 33602948 (-)
LOC120561752 NA other upstream 1660384 34095251 ~ 34097590 (-)
G78245 NA other upstream 1660776 34095643 ~ 34146296 (-)

Expression


Co-expression Network