LOC120562114


Basic Information

Item Value
gene id LOC120562114
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32784245 ~ 32818546 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU104100
TGAAGTTACTATCATATTGTGTAAGGtaccattaaaaaagaaaacccagGAATAGGATTGCAATCACAAGAATCATGGAATGACGGTTACTGAATTCCTCAGCCATTTTTGCTTGGCGTTCCTTCCTGATTATGAAATACAGACGGAGTGTGCCAAAGGGAAAGCAtcaacaccaccaccatcaccaccactcATATGGGACTCTCACTTTGCTCCCATGATGTGTTTTGCCTTAAGCTGAGCTGAGTCAATCTGCGCAGGGTGATTTGTGAGTGACCTCTTCAATGTGAAGAAAATGATGACCAAATCCTAAATGCCGGCGCCGCCTGATGACTTTGGCTGTGAAGGGTAATTGATTGGCGGGGATTATCCCCTTCCAAGTCACCTGCTGATGGAGCGCAGAGTGACAGAGGTGGAGCGATCTGCAGCCAGAGAGCATTCAGCTCTGCTACAGTGTGATGCCGAATGTCTCCTGTGAGGATGACAGGTGCTgagtgtaaaatatatataaaaaaaaaaaaaaaaaaaaaaaatgtattctcaCATAGACAGTGTTTAAACAATGACCCCGATTCTTCTCTGTCTTTTGCTGAAATGTTTAGTGTAGTAGTTTACTGTAAGGATCCCTATAAGAGGACGCCTAGACGACCAGCTAGTATTCCTTGGGTCC
>XR_005639694.1
GTTACTATCATATTGTGTAAGGtaccattaaaaaagaaaacccagGAATAGGATTGCAATCACAAGAATCATGGAATGACGGTTACTGAATTCCTCAGCCATTTTTGCTTGGCGTTCCTTCCTGATTATGAAATACAGACGGAGTGTGCCAAAGGGAAAGCAtcaacaccaccaccatcaccaccactcATATGGGACTCTCACTTTGCTCCCATGATGTGTTTTGCCTTAAGCTGAGCTGAGTCAATCTGCGCAGGGTGATTTGTGAGTGACCTCTTCAATGTGAAGAAAATGATGACCAAATCCTAAATGCCCAGCCGGCGCCGCCTGATGACTTTGGCTGTGAAGGGTAATTGATTGGCGGGGATTATCCCCTTCCAAGTCACCTGCTGATGGAGCGCAGAGTGACAGAGGTGGAGCGATCTGCAGCCAGAGAGCATTCAGCTCTGCTACAGTGTGATGCCGAATGTCTCCTGTGAGGATGACAG
>XR_005639695.1
GTTACTATCATATTGTGTAAGGtaccattaaaaaagaaaacccagGAATAGGATTGCAATCACAAGAATCATGGAATGACGGTTACTGAATTCCTCAGCCATTTTTGCTTGGCGTTCCTTCCTGATTATGAAATACAGACGGAGTGTGCCAAAGGGAAAGCAtcaacaccaccaccatcaccaccactcATATGGGACTCTCACTTTGCTCCCATGATGTGTTTTGCCTTAAGCTGAGCTGAGTCAATCTGCGCAGGGTGATTTGTGAGTGACCTCTTCAATGTGAAGAAAATGATGACCAAATCCTAAATGCCGGCGCCGCCTGATGACTTTGGCTGTGAAGGGTAATTGATTGGCGGGGATTATCCCCTTCCAAGTCACCTGCTGATGGAGCGCAGAGTGACAGAGGTGGAGCGATCTGCAGCCAGAGAGCATTCAGCTCTGCTACAGTGTGATGCCGAATGTCTCCTGTGAGGATGACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104100 True 670 lncRNA 0.44 3 32784245 32818546
XR_005639694.1 False 488 lncRNA 0.48 3 32784428 32818542
XR_005639695.1 False 483 lncRNA 0.47 3 32784428 32818542

Neighbor

gene id symbol gene type direction distance location
ptpn23a ptpn23 coding downstream 380823 32376916 ~ 32403422 (-)
LOC120562214 NA coding downstream 619729 32161017 ~ 32164516 (-)
LOC120562213 NA coding downstream 640967 32138778 ~ 32143278 (-)
LOC120562215 NA coding downstream 647339 32127422 ~ 32136906 (-)
ankmy2a ankmy2,LOC102794045 coding downstream 841481 31933067 ~ 31942764 (-)
lysmd1 NA coding upstream 83470 32902016 ~ 32905473 (-)
tmod4 tmod4,LOC102789303 coding upstream 96774 32915320 ~ 32946228 (-)
mcl1b NA coding upstream 200159 33018705 ~ 33021075 (-)
LOC120562448 NA coding upstream 296671 33115217 ~ 33130559 (-)
ctsk ctsk,LOC107086845,LOC106920373,LOC103156711,LOC106949137,LOC103477640 coding upstream 315564 33134110 ~ 33153043 (-)
G77850 NA non-coding downstream 95614 32688412 ~ 32688631 (-)
G77847 NA non-coding downstream 317515 32466172 ~ 32466730 (-)
G77829 NA non-coding downstream 379607 32404292 ~ 32404638 (-)
G77793 cspg5,LOC103364230,LOC102791138 non-coding downstream 489628 32227268 ~ 32294617 (-)
G77797 NA non-coding downstream 533804 32249924 ~ 32250441 (-)
G77910 NA non-coding upstream 48600 32867146 ~ 32894790 (-)
G77949 NA non-coding upstream 281270 33099816 ~ 33101537 (-)
G77959 NA non-coding upstream 313697 33132243 ~ 33132533 (-)
G77984 s100a1,LOC105028680,LOC106605324,LOC107587912,LOC107689908,LOC107663298,LOC107598020,LOC107717776 non-coding upstream 466367 33284913 ~ 33286592 (-)
G77994 NA non-coding upstream 641476 33460022 ~ 33460244 (-)
sema6e sema6c,LOC103360390,LOC104932808,LOC100704625 other downstream 139276 32480644 ~ 32644969 (-)
LOC120561540 LOC104957162,LOC106526711,LOC102237165 other downstream 349378 32425365 ~ 32434867 (-)
tbx20 tbx20 other downstream 793880 31976484 ~ 31990365 (-)
LOC120562592 dgkb,LOC102796570 other downstream 1157364 31612436 ~ 31626881 (-)
G77573 NA other downstream 1265209 31516455 ~ 31519036 (-)
ensab ensa,LOC103369031,LOC100695493,LOC101487776,LOC102787866,LOC102291346,LOC102199757,LOC108243249 other upstream 203552 33022098 ~ 33032895 (-)
LOC120561932 NA other upstream 771975 33590521 ~ 33602948 (-)
LOC120561752 NA other upstream 1276705 34095251 ~ 34097590 (-)
G78245 NA other upstream 1277097 34095643 ~ 34146296 (-)
LOC120561744 NA other upstream 1310992 34129538 ~ 34132432 (-)

Expression


Co-expression Network