G78002


Basic Information

Item Value
gene id G78002
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33515709 ~ 33518515 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU104277
ACTTTTATTTGAAGTCATTCTGGAGAGCAGTGCCAGGTGAATGCTTTAAGcgtcatttttatttcagtattgacaaatgtaaaaaatgaaaagaaagaacaaGATGTTCATACATGATACAAACTTTGTTAAAAAACATTGTGATTGATTAATTAGGGCCTCCATATTATAGGCAAAGTAATCCAATTTGCACAGTCCTCAACTAAAGTCAGTTTTCTGTCAAAATTCATGTACGCTTTTGCCAGTTTCGATTTTTGTCCACAAACTAAAATTTGCCGATGAAAGCACGTGTAGGACATGTCAAACAACTGTGGCCCCCCCGACAGCCGGCAGACTTAATGCTAATCGTGCCGGCTGTCTCATTTTCTAAGCAGAGTtcttaaaatgaaacaaaaaccaGATGCTCATTTAAATTTGGCAGCAGACAAAGAGGCTTGAGCCAAACCTGACTAAACAGACAGTAAAACTGCTAAACTGGCTTGTACTGATGGAGAGAAATCAACACCTGCTATTAAAAACATGTGtggagttctttttttttttcttcccttttttctAACCTCATAAAAATAGCTGATTCACTTTCAAAAGATACCCCCGTGAAAATGCGGTATCTCCATCTGTCTTCTGCAACAATcgcaaaacaacaaaacaagttaaaaacaaaaaacattgtgatttatgtttttttgttgttcattCATTAGTTTTTTGACAGCCTTTGGCTGAGTTCACACTTGGCGCGTCTTATATTAAGCTGCCAGCGCcgttttacattataatcctatGGCGTAAACCGTGTTGTCAAAAAAGTTGAGCGCTTTTTTAAACGCCACCGCCGACcttttttctgcagctcgtagcgtgtttttgaagttgaaaaaaagttcaacttttctaaagaaaaaaaaaaataaagaaaaaacgtCTTACGTCAAGCGCGTTTTTTGAAAGCCGACCAATGAGGAGCGGAGTAGAGAGATCTGTCGTTCATAACAACGACAGGTTCATAACAACGAGAAAAATGGAGTCAGAGCACAGCGAGTTATGATATGACCGGGTGCTCCGTGTATAGGGAActcgctttgttttatctaacgttagtagcacagctctctctctattctctctctagctcgctccaccgctTTGTTTTATCCAACGTTAGCATTGCTCCACATAGCGCTCTCAgatactgtagcagtagctgtGGTTAAAGCAGCAAAAGACGCCGTTGGCTGCTTTTTGGAATAATAACGctgcctgctttttttttttttttttttttactataaaaGCGCCCTAttcaactttttcttgtcaaaaaagacgccaagtgtgaacatgGCCTCAGAATCCCATCACCCATAGAGGAGCCAATGTAAACATCAAAGGGCAACTCCGGTTTATTTCAACTCTGAAAATACGCCGAATGAAACTGGAATTTCTCTTTAAGGTGAAGAtggaagaaaatgaaaatgaacaaaaatggaGTTAAACTGTTTTTGAGTTAAAGCTGCAATGTAATACTAATTCAGAAACCGTGCCAGGTGATGTCAAGTGTGTCTGCTTGTTAAGTTGCTTTTTTCAAATACCTTAGATGCTTATTTCAACAGTGGCACCAGATGCTCAGTCCAAACCAGAGCCCAAAGTGTGCTGGGATCAGCGCAGAGAAATCAAATGGGTCGATCAGTGCCCCAGGCCTCCAAAACACcttgtcctcttcttcttccagcTCACTTTGTCAAATGAGGCCAAGTGTTAATGCAAGCAACAGAAAATCCTCCGCGGAAAGTTAAAACCGAAGCACCAGAAGTTCCTGGAGAGCATTTGGAGatgacattaaagttagtgaTGTAAACTTTGTGCGTGTccggatgtttgttttttctcgCACGGTCAACGAGGATTGGCGATGAAAAATACATGAACGTGGTAACTAAGGCAACTTCAGCAGGACTGGATACGCCTCTCCCATAATCCCAAACAAACGTGTCTCCCTGTCCACAGGACAGTCTTTCTCTTGGACTAGACAAGGAGGAAGATATATGGccggatgaaaaaaaaacaacaaaaaagaaccGAGGGAATGGAttcacctcctctcctcctgaggagaggaggagaagatgcTAGATTGAGTAGAAAGGAGTGATCCTCTGCTCACTCAACCACCTCTTCACctaaaaaaatgtcttttctcttttgggagcagaggaggaagagaagatcTGTTCATCCTTGCGTCCTATAAACAGAGGGGGAAAAggggagtagtagtagtagtagtgataGGAGGAGTAGAAATATAAATAGATAGTAAAGGAGGTTTGTTAAATCCCTCCTTCACATCCTTTGTTCATCTGTATCTATAAGATCCTGATGTCCTTCTCGTGAAAGAGTCTGTTAGTTCAGAGTTCCCGTGGTTTTTAGCGCTACTTTTCCGGAAGTTACCCAGCCGGCTGGCGGGGTCGGTCGGCCGGTCGGTCGGCAAGGTGCCAGTGAAGTGGGGGCAGGCGTGGCCTCAGTCAGAGGGGACGGGTGTGACGCAGATGTGCAGGAAGTTGTCGGGGTGGCTGAGGTGTTCGCTCAGCCACTGCAGGGGCGTCTCCAGCAGCGGCTCGATGCCATGGATCACCACCTGGTAACGCTTCTGCTCACCTGGACggagagaaaggagggagggaggaagtgagggagggaggcaggcaCAATTAATGTAATCATTATTAACTAGTAGCATCCTTTaatacatgtgtcaaactccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104277 True 2769 lncRNA 0.43 2 33515709 33518515

Neighbor

gene id symbol gene type direction distance location
prdm1a prdm1,LOC103362578,LOC100706221 coding upstream 26035 33473172 ~ 33489674 (+)
s100a1 s100a1,LOC105028680,LOC106605324,LOC107587912,LOC107689908,LOC107663298,LOC107598020,LOC108272706,LOC108441918 coding upstream 229363 33283047 ~ 33286346 (+)
tlr18 LOC103362575 coding upstream 237192 33263730 ~ 33278517 (+)
si:ch211-113g11.6 LOC103362574,LOC103388694,LOC108243248 coding upstream 254792 33206707 ~ 33260917 (+)
lingo4b LOC104947071,LOC108243198 coding upstream 315067 33175909 ~ 33200642 (+)
dctn3 dctn3,LOC102785116 coding downstream 38736 33557251 ~ 33566277 (+)
nt5c3a nt5c3a coding downstream 87331 33605846 ~ 33628945 (+)
trnap-agg_3 NA coding downstream 107416 33625931 ~ 33626002 (+)
trnap-agg_4 NA coding downstream 112524 33631039 ~ 33631110 (+)
trnap-agg_5 NA coding downstream 113127 33631642 ~ 33631713 (+)
G78001 NA non-coding upstream 22049 33493424 ~ 33493660 (+)
G77993 NA non-coding upstream 55474 33460022 ~ 33460235 (+)
G77991 NA non-coding upstream 190689 33324604 ~ 33325020 (+)
G77986 NA non-coding upstream 216167 33296251 ~ 33299542 (+)
G77894 LOC103369035,LOC103362570 non-coding upstream 384836 33115275 ~ 33130873 (+)
G78000 NA non-coding downstream 45505 33564020 ~ 33588256 (+)
LOC120561935 NA non-coding downstream 65290 33583805 ~ 33588092 (+)
G78052 NA non-coding downstream 404478 33922993 ~ 33923230 (+)
G78054 NA non-coding downstream 419744 33938259 ~ 33938468 (+)
G78055 NA non-coding downstream 432258 33950773 ~ 33951005 (+)
G77888 NA other upstream 414175 33100413 ~ 33101534 (+)
LOC120561717 NA other upstream 1094237 32405133 ~ 32421472 (+)
G77682 tbx20 other upstream 1535800 31976318 ~ 31979909 (+)
G77447 NA other upstream 2379563 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 2784100 30687338 ~ 30731609 (+)
bmper bmper other downstream 307572 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 375845 33894360 ~ 33904285 (+)
sh3bp5b sh3bp5,LOC102783023 other downstream 472027 33990542 ~ 34042648 (+)
G78200 NA other downstream 1010840 34529355 ~ 34544379 (+)
LOC120562567 NA other downstream 1320642 34839157 ~ 34856532 (+)

Expression


Co-expression Network