LOC120561758


Basic Information

Item Value
gene id LOC120561758
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34342514 ~ 34345393 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU104500
CTCGATTGTATGTTAATGTCATGACACTTGGACTCGCTCTCAGTAAACTACTTGTACCTGTCGGAGTGCTGCCTGTAgacctgctctctgttcctcctGTTGGATTTTGTGTAATAAAGCTCAACTTCACTCACCTCCAGTCTGACTCCTACTCCTTCCGTGAcaagtacaactagcaggagaaaAGTAATAATtaagATGGACTTTGTCCTATGGAGTGGGGATGGCACAAGTGTGGCGAGGGATTTGTGCCAATTAAGACAACCCTACCTCCTGCTCCCGAGAAGCTAATGAAGGTCATAAGGTGTAGCTGCCAGTCTGACTGCAGCACCCTGAGATgcagttgttaaaaaaaacaaaaaaaaaaaacacaatatagaATGCACCCGGCCAGTGGACACTGCAGGGGGGCGAGCTGCACAAACTCAATGCAGATGGCCTGTGATGAGAATGAAGATGAGATTTTCTATTAGTGCATTGTACTCATCCTCCAGAAACAGTCCCACAGACCCAGCCCCAAATCCCATCTCTGCAATAATTAATGAAGGCTGGTTTAAAGtacttcttcctgcctctatgtTTTAATGCTCATGGGTAGCCTAAATAGGTTCCATTCAGACCTTAACATTAAGTCTTTTACGGTTATGTCAAGATTCAACAAGACCTTTTCACCTGGCTATACCCAATGTTTAGATCTGTTGTGGTATTTATGGAATTAGCACATACATAATTAGATTATGCACCATTTGCCTATGTTAACAATTTCAAAATActtgtaatacattttgtttgtcttgatgtaagtaatcaactcagtaattttcatggtgatatctaaaAGGTTAAATTTGTTACCCTATTCAagtgagaaaaagaatgaataggCGTATGAATAGGCTATATTTGGGTCTTTTTTGAAACTTTCCCTTAATGGGATTCTTTGGGGCTTTTTTATTTCCTT
>XR_005639641.1
TTAATGTCATGACACTTGGACTCGCTCTCAGTAAACTACTTGTACCTGTCGGAGTGCTGCCTGTAgacctgctctctgttcctcctGTTGGATTTTGTGTAATAAAGCTCAACTTCACTCACCTCCAGTCTGACTCCTACTCCTTCCGTGAcaagtacaactagcaggagaaaAGTAATAATtaagATGGACTTTGTCCTATGGAGTGGGGATGGCACAAGTGTGGCGAGGGATTTGTGCCAATTAAGACAACCCTACCTCCTGCTCCCGAGAAGCTAATGAAGGTCATAAGGTGTAGCTGCCAGTCTGACTGCAGCACCCTGAGATgcagttgttaaaaaaaacaaaaaaaaaaaacacaatatagaATGCACCCGGCCAGTGGACACTGCAGGGGGGCGAGCTGCACAAACTCAATGCAGATGGCCTGTGATGAGAATGAAGATGAGATTTTCTATTAGTGCATTGTACTCATCCTCCAGAAACAGTCCCACAGACCCAGCCCCAAATCCCATCTCTGCAATAATTAATGAAGGCTGGTTTAAAGtacttcttcctgcctctatgtTTTAATGCTCATGGGTAGCCTAAATAGGTTCCATTCAGACCTTAACATTAAGTCTTTTACGGTTATGTCAAGATTCAACAAGACCTTTTCACCTGGCTATACCCAATGTTTAGATCTGTTGTGGTATTTATGGAATTAGCACATACATAATTAGATTATGCACCATTTGCCTATGTTAACAATTTCAAAATActtgtaatacattttgtttgtcttga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104500 True 961 lncRNA 0.40 3 34342514 34345393
XR_005639641.1 False 786 lncRNA 0.42 3 34342526 34345230

Neighbor

gene id symbol gene type direction distance location
LOC120562692 NA coding upstream 253768 34084095 ~ 34088746 (+)
LOC120562646 NA coding upstream 406571 33922578 ~ 33935943 (+)
LOC120562644 NA coding upstream 423339 33916999 ~ 33919175 (+)
mettl6 mettl6 coding upstream 431300 33906390 ~ 33911214 (+)
bbs9 bbs9,LOC102784155 coding upstream 519685 33632641 ~ 33822829 (+)
LOC120561733 NA coding downstream 74514 34419907 ~ 34441093 (+)
nes NA coding downstream 264517 34609910 ~ 34622583 (+)
hapln2 hapln2,LOC102779935 coding downstream 606659 34952052 ~ 34964798 (+)
rrnad1 rrnad1 coding downstream 697828 35043221 ~ 35058363 (+)
LOC120563199 NA coding downstream 714066 35059459 ~ 35071390 (+)
G78180 NA non-coding upstream 18155 34316811 ~ 34324359 (+)
LOC120561762 NA non-coding upstream 47930 34290762 ~ 34294584 (+)
LOC120561759 NA non-coding upstream 91306 34249029 ~ 34251208 (+)
G78134 NA non-coding upstream 288778 34048440 ~ 34053736 (+)
LOC120561795 NA non-coding upstream 354527 33984849 ~ 33987987 (+)
G78195 NA non-coding downstream 123513 34468906 ~ 34469457 (+)
LOC120561766 NA non-coding downstream 157480 34502873 ~ 34505357 (+)
G78219 NA non-coding downstream 289362 34634755 ~ 34658151 (+)
G78366 NA non-coding downstream 568964 34914357 ~ 34918069 (+)
G78440 NA non-coding downstream 685515 35030908 ~ 35031135 (+)
sh3bp5b sh3bp5,LOC102783023 other upstream 299866 33990542 ~ 34042648 (+)
LOC120562157 NA other upstream 438229 33894360 ~ 33904285 (+)
bmper bmper other upstream 463382 33826087 ~ 33879132 (+)
G77888 NA other upstream 1240980 33100413 ~ 33101534 (+)
LOC120561717 NA other upstream 1921042 32405133 ~ 32421472 (+)
G78200 NA other downstream 183962 34529355 ~ 34544379 (+)
LOC120562567 NA other downstream 493764 34839157 ~ 34856532 (+)
G78594 NA other downstream 1059982 35405375 ~ 35408682 (+)
LOC120562275 NA other downstream 1397902 35743295 ~ 35773988 (+)
LOC120562279 NA other downstream 1520449 35865842 ~ 35888172 (+)

Expression


Co-expression Network