G78535 (plekhf2)


Basic Information

Item Value
gene id G78535
gene name plekhf2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35267769 ~ 35269865 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU105001
AGCTCGCTCCATCGATAGGTTTTAGCACCTCTCCACTTAGCGCTCTAGGATACCGTATCATTAGCTGTTGTAACAGCAACAAAAGATGCTCTCGGCTGCTTTTTGGAACCAAAACGCTGCCAGCttcttctgttttttctttccccCCCACTACAAAAGCGCCCTAGTGAACTTTTTctcgtcaaaaaaaaaaagacgccaagtgtgaacaCAGCCTCAAACGTGCTAATTTGAGAGTCAGCGGTTGAGAGGTTAGTGCGAGTGTCTTTTCAATCGTCTGGCAGAGAACAAACCTGCCCAGGAGAAGTCCAAATTGAACTCTTCCCGTCTGTCGGCCGGTTGCTAATCTCCCTGCTCTTCggtttgcagcagcagcacacgcGCACAAAACCGAACCCTCCATCCTGTGTATCAATGGGTTTCACAGTCAAACTGTCATCACGtccctgttgttgtttttgcagcCTGGATATATTAACAAATCCCTTTTTTTCATACTGAAAGCTGAGCTGAAGTTTCTACAAGGCACTGAGTGACGTCATAGGGAAAAGGGAGAGTTAGTTTTTAAGATAGAATAGATGAGAAAAACTCACTGTGAGAAACTTCAGCTGATTTGTCAGAAGCAACTATATTAGGTCAACTAGAAAAAGCTCTGGGTTTAGAGTAATATCTACATGTTATTTATATCAAAAAAGGGATCTTGAAATTTTTTTTGCATGAGGGAAATTTACAAAATAGGGAAGAAAAATACCAAACTtctagtagaaaaaaaaacaaaaaaaaaacagtttggtGTCATTACCTGAAGGACAGAGGAGATAAAAAGGTTAGAGCCCAAAACATTTGCGTTCCCTGCAGAAATTACAAGCACAATCACCTTGTTcagttcaataaaataaaaactggagcaaaaaaaaaagaagcctcTTAGACGAAATAAacttaaagaggagagagagagagagagagagagagagagagagagagagagaagaggaggggggtGTTTCTCATTAGCACCATTGAGTTCTGTAGTGACCAATCGCAGCCTAATCGAGAGTCAAAAGAGACGGAGCAGAGTGGGAGCGATGAAGAAGAGTCAAGTCTGTCTCCCAGAGCTGTGCCGGTCGCCCCGGGCTAATTCCACACGTCATTGTTTGAATCACGGTTCTcaggaaaaacacaacaacatgtATCCATGCTGGAAttagaggggaaaaaaataatatattttggtttgaagagaattaaaatatgaatccTCGGAGGAGGGCGGCGCATGATTCGATCATGTGGGAGGAGAAAGAAActcaaaagaaaagggaagTGTTTCCTCTTCGCCGTAGgggtggggggcgggggggggtggCCTTGATCCTCAGTCGCTGctgtcgtcgtcgtcgtcgtcgtccgACAGGTTGTTGAACTTCGACCCGAGCCGGGTGATGGAGTCCGAGCGCGGCGCCAGGCCGCCCGACGTCAGCTGCACGTAGCAGTACTCGCAGACGCGCACGGGCTTGGACGACTGGCTGGGCAGGAGGTGCTTCTTCTCCGAGCACGGCCCGCACACCACGTAGCCGCACTTCCGGCAGTGGTGGCGCCGGCTGACCGGCGTGAACTTCACCTTCTGGCAGCGCATGCACACCGTCGCCTCCGAGTCGGGCACCCACACGGCGGCGTGCTCGCCCGTCGGCGCCTTGCCGCTCTTCTGCAGCAGGTCCCCGACGCACTTCCCGATGTGGTTCATCCACTCGGACTTCTCGTTGGCGGTGGCGGCGTACACGGCGAAGGACTTGGTGGGCGTCTTGATGAGCCAGCCGTTGTGCAGGTCGCCCTCGTCCGGCACGGTGTCGATGGTGACGCTCTCCAGCGGGATGATGTGCTGCTTGTTGTACTTCTTCTTCTGGATGACGATGTTGCCGTAGACCAGGATGTCGTTGAAGAGGAAGAACTGCCGCGCCTTGGGCTTCTTGCGGCAGAGTTTGGTGAGGACGCCCTCGCCGATCAGCACGCGGCCGGGGATGGCGAGCGGCTGGCCCGCCGCGCCGAAGCAGCCCTCCACCACGCCGATCCGCTTGGAGTTGGCCTCGCTGTTCG

Function

symbol description
plekhf2 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in early endosome membrane and endoplasmic reticulum. Orthologous to human PLEKHF2 (pleckstrin homology and FYVE domain containing 2).

NR:

description
PREDICTED: pleckstrin homology domain-containing family F member 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105001 True 2097 lncRNA 0.51 1 35267769 35269865

Neighbor

gene id symbol gene type direction distance location
wdr73 csgr05h8orf37 coding upstream 37457 35208147 ~ 35230312 (+)
c7h8orf37 csgr05h8orf37,LOC103366206 coding upstream 66375 35188683 ~ 35201394 (+)
trnas-aga_7 NA coding upstream 79570 35188118 ~ 35188199 (+)
cd83 NA coding upstream 84212 35177408 ~ 35183557 (+)
zgc:113232 LOC103366216 coding upstream 99589 35129114 ~ 35168180 (+)
LOC120561699 LOC102800167,LOC102194503,LOC101481262,LOC104936483,LOC103358273 coding downstream 87389 35357254 ~ 35362521 (+)
nagpa NA coding downstream 178703 35448568 ~ 35489477 (+)
tp53inp1 NA coding downstream 238468 35508333 ~ 35528009 (+)
ccne2 LOC103358269 coding downstream 265182 35535047 ~ 35546748 (+)
LOC120562274 NA coding downstream 351895 35621760 ~ 35630081 (+)
G78534 NA non-coding upstream 5312 35260160 ~ 35262457 (+)
G78532 NA non-coding upstream 14491 35252984 ~ 35253278 (+)
LOC120561545 NA non-coding upstream 15655 35245743 ~ 35252114 (+)
G78527 NA non-coding upstream 22778 35244747 ~ 35244991 (+)
G78525 NA non-coding upstream 25199 35242332 ~ 35242570 (+)
G78537 NA non-coding downstream 16941 35286806 ~ 35345126 (+)
G78544 NA non-coding downstream 52951 35322816 ~ 35350378 (+)
G78549 NA non-coding downstream 81726 35351591 ~ 35352815 (+)
G78551 NA non-coding downstream 86158 35356023 ~ 35356485 (+)
G78588 NA non-coding downstream 119650 35389515 ~ 35389883 (+)
LOC120562567 NA other upstream 411237 34839157 ~ 34856532 (+)
G78200 NA other upstream 723390 34529355 ~ 34544379 (+)
sh3bp5b sh3bp5,LOC102783023 other upstream 1225121 33990542 ~ 34042648 (+)
LOC120562157 NA other upstream 1363484 33894360 ~ 33904285 (+)
bmper bmper other upstream 1388637 33826087 ~ 33879132 (+)
G78594 NA other downstream 135510 35405375 ~ 35408682 (+)
LOC120562275 NA other downstream 473430 35743295 ~ 35773988 (+)
LOC120562279 NA other downstream 595977 35865842 ~ 35888172 (+)
G78759 NA other downstream 840986 36110851 ~ 36190839 (+)
G78772 NA other downstream 988295 36258160 ~ 36350995 (+)

Expression


Co-expression Network