XLOC_004623 (rnls)


Basic Information

Item Value
gene id XLOC_004623
gene name rnls
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17201522 ~ 17323341 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009159
AtaatacttaaagggacagtacaatAAATCGTGTAAGATCTTCAGACAAGCGCGAACGCTTTGCTTTTCTACCTCAAACAGTTGTTTATtcacattttctaaaaatgtcCCGAGTTCTTATAGTTGGGGCTGGACTCACAGGTAGTTTATGTGCCTGTCTGCTGAGGAGGGAACTGCCAAACAAAGTTAATATAGTCGTGTGGGACAAATCTCGCGGTGCAGGGGGTAGAATGTCCACAAGCAGAAGTCCAAACAATCCTTCTTGCTCGGTTGATCTTGGAGCTCAATACATCAGTGCCACACAGTACTATGCTCAAATTCACAGCAGCTTTTATGAAGAACTCCTAGCGCAAGACATTTTAAAACCCCTCAGTGCTCCTGTTGAAGGCCTGATGGTAAAGGAAGAAGGAATGGTGAACTATGTGACACCTCATGGGGTCTCCTCCATCGTCAAACACTATCTCAAAGAGTCAGCAGGAGCAGAGGTTTTCTACAACCGACACGTCACTCACATTCACCGGAAAGACACTGGCTGGGAAGTGTGTCGCAAAGAAGGAGCTCCAGAGCGGTTTGACGTAGTGGTTTTAACCATGCCAGTTCCCCAAATCCTCCAGCTGCAAGGAGACGTGGGTTCTTtGATGGGGGAGAATCAGAGGAGAAAGCTGGAGGCTGTCAGCTACTCTTCCCGCTACGCACTTGGACTCTTCTACAAAGCCGACACACGGATCGACGTCCCTTGGGCGGCCAAGTACGTCTCAAATAATCCCTGCATTCGCTTCATCGCCATAGATGATAAAAAGCGCAATTTAGAATCAAAAGTCTCCGGACCTTCTGTGGTGGTCCACACCAGTGTGCCCTTTGGCATCCAGCACTTGGAAGAGGAGAAGGATGCTGTGCAGCCCATCATTCTGGAAGAGCTGAAAAAGCTGATGCCAGAGCTGCCTAAACCTGAGAGTGTCAAGTGTCAGAAGTGGAGATATTCACAGGTGACAAGATCGGTGGCTGATTGCCCAGGGCAGATGACAGTGCTCTCCCAGCCTCTGCTGGTGTGTGGGGGGGACGGATTCACACACTCCAATTTCGACGGCTGCATCGAGTCTGCCCTGAAGGTCTTTGCGGTTCTGAAGTCTTCTCTTTGAAAGGAGGTTGGAAAAGTATGCctttatttttggtttttattATGAAGGATGGCACATTGATTTAGATTTAAGCCCCTCACTGCAGGAAGATGGATGTACTGCACAAAGCACAGTCTCGTCTGGGTGTGCAGACGCATTTTGTAACAAAAACCAATTATATAGGATTAAAGACAACCGAGCACTGTGCAGCTTCAGTTGTGACAGAGCCTGATGCCTCAAACTGGATTTAACAATGTCTTGAGCTATGGTGTTCTGGATGTGTAGCAGATATTTTGTGTAGTCTgagattaataaaaaattattgataCATGCTTGAA
>TCONS_00009160
acttaaagggacagtacaatAAATCGTGTAAGATCTTCAGACAAGCGCGAACGCTTTGCTTTTCTACCTCAAACAGTTGTTTATtcacattttctaaaaatgtcCCGAGTTCTTATAGTTGGGGCTGGACTCACAGGTAGTTTATGTGCCTGTCTGCTGAGGAGGGAACTGCCAAACAAAGTTAATATAGTCGTGTGGGACAAATCTCGCGGTGCAGGGGGTAGAATGTCCACAAGCAGAAGTCCAAACAATCCTTCTTGCTCGGTTGATCTTGGAGCTCAATACATCAGTGCCACACAGTACTATGCTCAAATTCACAGCAGCTTTTATGAAGAACTCCTAGCGCAAGACATTTTAAAACCCCTCAGTGCTCCTGTTGAAGGCCTGATGGTAAAGGAAGAAGGAATGGTGAACTATGTGACACCTCATGGGGTCTCCTCCATCGTCAAACACTATCTCAAAGAGTCAGGTATACACTGTACTGTAGGTCATTTGACTTCTTCTTTTTCCCAAAACTTTTTTCTGTTTCACTAACCAACTACTGTAAGATACTGTAGCAAGTtttgttgttacaaacatagttcagcGATATGGTGTTTCCTGAATCCATAATTTCAAGGTACCAAAGAATCCGTTGCTTCAGTGTACTAAATATCAcgattaggcccaatcccaattctaccgcttagcccttccccttaccacTACCTTTCAGTTTGCGCATTcccatgaaggggtaggggtgtcccaattcttttt
>TCONS_00009161
AATCGTGTAAGATCTTCAGACAAGCGCGAACGCTTTGCTTTTCTACCTCAAACAGTTGTTTATtcacattttctaaaaatgtcCCGAGTTCTTATAGTTGGGGCTGGACTCACAGGTAGTTTATGTGCCTGTCTGCTGAGGAGGGAACTGCCAAACAAAGTTAATATAGTCGTGTGGGACAAATCTCGCGGTGCAGGGGGTAGAATGTCCACAAGCAGAAGTCCAAACAATCCTTCTTGCTCGGTTGATCTTGGAGCTCAATACATCAGTGCCACACAGTACTATGCTCAAATTCACAGCAGCTTTTATGAAGAACTCCTAGCGCAAGACATTTTAAAACCCCTCAGTGCTCCTGTTGAAGGCCTGATGGTAAAGGAAGAAGGAATGGTGAACTATGTGACACCTCATGGGGTCTCCTCCATCGTCAAACACTATCTCAAAGAGTCAGGAGCAGAGGTTTTCTACAACCGACACGTCACTCACATTCACCGGAAAGACACTGGCTGGGAAGTGTGTCGCAAAGAAGGAGCTCCAGAGCGGTTTGACGTAGTGGTTTTAACCATGCCAGTTCCCCAAATCCTCCAGCTGCAAGGAGACGTGGGTTCTTtGATGGGGGAGAATCAGAGGAGAAAGCTGGAGGCTGTCAGCTACTCTTCCCGCTACGCACTTGGACTCTTCTACAAAG
>TCONS_00009162
AAGATCTTCAGACAAGCGCGAACGCTTTGCTTTTCTACCTCAAACAGTTGTTTATtcacattttctaaaaatgtcCCGAGTTCTTATAGTTGGGGCTGGACTCACAGGTAGTTTATGTGCCTGTCTGCTGAGGAGGGAACTGCCAAACAAAGTTAATATAGTCGTGTGGGACAAATCTCGCGGTGCAGGGGGTAGAATGTCCACAAGCAGAAGTCCAAACAATCCTTCTTGCTCGGTTGATCTTGGAGCTCAATACATCAGTGCCACACAGTACTATGCTCAAATTCACAGCAGCTTTTATGAAGAACTCCTAGCGCAAGACATTTTAAAACCCCTCAGTGCTCCTGTTGAAGGCCTGATGGTAAAGGAAGAAGGAATGGTGAACTATGTGACACCTCATGGGGTCTCCTCCATCGTCAAACACTATCTCAAAGAGTCAGCAGGAGCAGAGGTTTTCTACAACCGACACGTCACTCACATTCACCGGAAAGACACTGGCTGGGAAGTGTGTCGCAAAGAAGGAGCTCCAGAGCGGTTTGACGTAGTGGTTTTAACCATGCCAGTTCCCCAAATCCTCCAGCTGCAAGGAGACGTGGGTTCTTGTGAGTACATTACCACATCGCCGCagacacatataaacacacactttGGCCTTAAAATTGAAATATGACTTTTGGTTTTGCTGTCTGCCATTGTTTCTGCTGAAAATGCATCCCAGTGAAGTCTCATCATTTTTTAATTTGGTCTTATTTCAGAAATATCCATAGAAGATTTCAAAAGTTATTCAAAATTCTCTATTAAGTGAACTTCTATTAAAGTAAACTTTAGTTTAAGCATTTTTACTTGTATTAAGCTCAATCACAACTAACAACTTTACACATTTATTGGaaatta

Function

symbol description
rnls Predicted to enable oxidoreductase activity, acting on NAD(P)H. Predicted to be active in extracellular region. Human ortholog(s) of this gene implicated in essential hypertension and hypertension. Orthologous to human RNLS (renalase, FAD dependent amine oxidase).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005575 cellular_component cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-351 Predicted to enable oxidoreductase activity, acting on NAD(P)H. Predicted to be active in extracellular region. Human ortholog(s) of this gene implicated in essential hypertension and hypertension. Orthologous to human RNLS (renalase, FAD dependent amine oxidase).

Ensembl:

ensembl_id ENSDARG00000012453

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009159 False 1456 mRNA 0.47 7 17201522 17323341
TCONS_00009160 False 759 lncRNA 0.43 3 17201527 17204394
TCONS_00009161 False 685 mRNA 0.47 5 17201548 17272732
TCONS_00009162 True 894 lncRNA 0.42 4 17201556 17211669

Neighbor

gene id symbol gene type direction distance location
XLOC_004622 ankrd22 coding upstream 42887 17154655 ~ 17158635 (+)
XLOC_004621 acta2 coding upstream 85041 17100021 ~ 17116481 (+)
XLOC_004620 ch25h coding upstream 157648 17042754 ~ 17043874 (+)
XLOC_004619 slc16a12b coding upstream 214554 16967715 ~ 16986968 (+)
XLOC_004617 pank1b coding upstream 236682 16953415 ~ 16964840 (+)
XLOC_004624 AL731788.1 coding downstream 22209 17345550 ~ 17345667 (+)
XLOC_004625 NA coding downstream 101090 17424431 ~ 17427380 (+)
XLOC_004626 atad1b coding downstream 113563 17436904 ~ 17456083 (+)
XLOC_004627 cyth3a coding downstream 181218 17504559 ~ 17562703 (+)
XLOC_004628 pms2 coding downstream 280187 17603528 ~ 17619524 (+)
XLOC_004618 dre-mir-107a non-coding upstream 240741 16960693 ~ 16960781 (+)
XLOC_004615 NA non-coding upstream 326819 16742395 ~ 16874703 (+)
XLOC_004614 NA non-coding upstream 616468 16583373 ~ 16585054 (+)
XLOC_004613 NA non-coding upstream 631478 16567854 ~ 16570044 (+)
XLOC_004612 NA non-coding upstream 709716 16490198 ~ 16491806 (+)
XLOC_004634 BX005075.1 non-coding downstream 802317 18125658 ~ 18125774 (+)
XLOC_004635 NA non-coding downstream 886530 18209871 ~ 18228004 (+)
XLOC_004644 AL772266.2 non-coding downstream 1275509 18598850 ~ 18598964 (+)

Expression


Co-expression Network