LOC120563181 (LOC107378893,LOC103370072)


Basic Information

Item Value
gene id LOC120563181
gene name LOC107378893,LOC103370072
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36392252 ~ 36465230 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU105392
TCGGCCTCCTACTCGCCGCTGCTCGGCGGGCAGGGCCAGCCGGCGCTCAGCACGTCGCCTAGGAGACGGGCGCAGCTCTCCCCGCTAATCCTGCCCATGGGAGCGGAGACGAGAAGGCATCACTCCAAACAGTTCTCCCCCACCATCTCCCCCACGCTGTCCTCCATCACACAGGTAACGCATCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACATTAACCACCCTATCACACACCTGAGGTAACACCTCCACATTAACC
>TU105393
attccaCTACGTCAAGTCGTCCCGTCAGCTCGGCGAAGATGTCTGCGACGGGTACAGGCGGCTGTGGACCCGGACCCGGACCCGCCTCGGGCGCCGGGTCCGGGGCTTCCAACCCACGAAAGTTTAGCGAGAAGATAGCGCTGCATACCCAGCGACAGGCCGAGGAAACAGCCGCTTTCCAGGAGGTTATGATGGACATCACCTCGACCAGGggcTCCTTCCCGTCCACTCTGGAGTCCACCCGGTCTACCCGACACCACGGTCTGGTGGAGCGCGTCCAGAGGGATCGCCGCTTCATCACACCGGTCCGACCGTACCGCAACCGACAAATGGACAGCTCGCAGTATAACTCCGCCTACCTGTCCCCGCCTCCGGACCCCGGCTGGAGAAGGAATTGGTCCGGAAGCTTCCCAGGG
>TU105394
attccaCTACGTCAAGTCGTCCCGTCAGCTCGGCGAAGATGTCTGCGACGGGTACAGGCGGCTGTGGACCCGGACCCGGACCCGCCTCGGGCGCCGGGTCCGGGGCTTCCAACCCACGAAAGTTTAGCGAGAAGATAGCGCTGCATACCCAGCGACAGGCCGAGGAAACAGCCGCTTTCCAGGAGGTTATGATGGACATCACCTCGACCAGGggcTCCTTCCCGTCCACTCTGGAGTCCACCCGGTCTACCCGACACCACGGTCTGGTGGAGCGCGTCCAGAGGGATCGCCGCTTCATCACACCGGTCCGACCGTACCGCAACCGACAAATGGACAGCTCGCAGTATAACTCCGCCTACCTGTCCCCGCCTCCGGACCCCGGCTGGAGAAGGTACTGTCTGAACAAacctctctctctctctctctctctctctctctctctctctctctctctctctttcttcccctcttcc
>XM_039807337.1
aCTACGTCAAGTCGTCCCGTCAGCTCGGCGAAGATGTCTGCGACGGGTACAGGCGGCTGTGGACCCGGACCCGGACCCGCCTCGGGCGCCGGGTCCGGGGCTTCCAACCCACGAAAGTTTAGCGAGAAGATAGCGCTGCATACCCAGCGACAGGCCGAGGAAACAGCCGCTTTCCAGGAGGTTATGATGGACATCACCTCGACCAGGCTTCAGGCCCAGAAGCTCCGTCTCGCCAGGAGTCAGGGTCCGTACTACGGCGGCTCGCTACCCAACGTTAACCAGATCGGCAGGAACCCTCAGGACTTCCAGggcTCCTTCCCGTCCACTCTGGAGTCCACCCGGTCTACCCGACACCACGGTCTGGTGGAGCGCGTCCAGAGGGATCGCCGCTTCATCACACCGGTCCGACCGTACCGCAACCGACAAATGGACAGCTCGCAGTATAACTCCGCCTACCTGTCCCCGCCTCCGGACCCCGGCTGGAGAAGGACGAACTCAGACTCGGCCCTCCACACCAGCGTGATGAACCCTCCCACGGGAGACCCCTTCACCACGGGAGGACCCACCCTCACCCCCCAGAGCAACAGACGCAGCGgtCAGAGTGATGGAGAGGGCAGAAGAATGTTTCCGTACCCTGTTCCCCCCATCGAAGAGAACGTGCTGGACGAGGGGAAGCTGCTCAAACCCTGGGACACCAAGAAGTTGCCTCTGTTGTCGTCCCGACCCAAGTCCTGTGAAGTCCCGGGCATCAATATCTTCACGTCTCCGGAGCAGCCGTCCGCGCCTTCTCACGGCATCCCGTCGGCGCTGAACACCGGCGGCTCGCTGCCGGACCTGTCCAGCCTCCACTTCCCCTCGCCGCTGCCCACGCCGCTGGACCAGGACGAGCCGGGCTACCCAGGATCCTCCTCTCTGAGCGGGGGCAGCAGCACGGGGAACCTGGCCTCCACGCTCACCCAGCTGGGCATCAACGCCGCCAACGCACAGGCCGGCAACGGCGgcttccaccaccaccacacgcCAGgTCTCCTGGCGTCCCTACAGAGCACGCTCAGTAACCCCTCCCTGCAGTCGTCGCTGAGCAACCCCAACATCCGGTCGTCGCTGAGCAACCACTCCTTCTCCAACTCCTTGAGCTCTGCGTCGCTGCACTCGTCGCTTAGCAACCCCTCTCTGTCCCTCAGCCCCTCCCCGTCCCTGCCGTCCTCCCTGAGCAGCCAATCGCTGCATTCCTCCCTCAGTAGCTCCTCCCTCCAGTCGGTGTCCAGCGGTAACCCCGGCTACAGCAGCGCCAGCGGCGGCGCTGGCGCTGGTGGCTCCGGCTCCTGCTCGGCCTCCTACTCGCCGCTGCTCGGCGGGCAGGGCCAGCCGGCGCTCAGCACGTCGCCTAGGAGACGGGCGCAGCTCTCCCCGCTAATCCTGCCCATGGGAGCGGAGACGAGAAGGCATCACTCCAAACAGTTCTCCCCCACCATCTCCCCCACGCTGTCCTCCATCACACAGGTAACGCATCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACGTTAACCACCCTATCACACACCTGAGGTAACACCTCCACATTAACCACCCTATCACACACCTGAGGTAACACCTCCACATTAACCACCCTATCACACACCTGAGGTAACACCTCCACA

Function

NR:

description
PREDICTED: CREB-regulated transcription coactivator 2-like

GO:

id name namespace
GO:0051289 protein homotetramerization biological_process
GO:0032793 positive regulation of CREB transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008140 cAMP response element binding protein binding molecular_function

KEGG:

id description
K16333 CRTC2, TORC2; CREB-regulated transcription coactivator 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU105392 False 389 lncRNA 0.58 2 36449783 36450210
TU105393 False 416 TUCP 0.64 4 36392252 36434225
TU105394 False 473 TUCP 0.61 5 36392252 36465230
XM_039807337.1 True 1751 mRNA 0.63 10 36392257 36450204

Neighbor

gene id symbol gene type direction distance location
LOC120563182 NA coding upstream 9156 36368694 ~ 36383096 (+)
nat16l NA coding upstream 25227 36360700 ~ 36367025 (+)
LOC120563177 NA coding upstream 201837 36178207 ~ 36190415 (+)
LOC120563175 NA coding upstream 263010 36111050 ~ 36129242 (+)
dek LOC102312342,LOC102210945 coding upstream 282120 36092199 ~ 36110132 (+)
LOC120563185 NA coding downstream 63251 36528481 ~ 36541530 (+)
atp2c1 LOC103369286 coding downstream 295280 36760510 ~ 36792668 (+)
LOC120563178 NA coding downstream 344330 36809560 ~ 36829422 (+)
aldh5a1 aldh5a1 coding downstream 390189 36855419 ~ 36869334 (+)
pik3r4 pik3r4 coding downstream 430159 36895389 ~ 36924827 (+)
G78770 NA non-coding upstream 52698 36335117 ~ 36339554 (+)
G78776 NA non-coding upstream 103098 36288792 ~ 36289154 (+)
LOC120563188 NA non-coding upstream 220088 36161780 ~ 36172164 (+)
G78756 NA non-coding upstream 304156 36087873 ~ 36088096 (+)
G78736 NA non-coding upstream 357600 36034348 ~ 36034652 (+)
G78822 NA non-coding downstream 35418 36500648 ~ 36706609 (+)
G78836 NA non-coding downstream 69563 36534793 ~ 36642606 (+)
G78837 NA non-coding downstream 113602 36578832 ~ 36643491 (+)
G78843 NA non-coding downstream 116713 36581943 ~ 36600679 (+)
G78844 NA non-coding downstream 116962 36582192 ~ 36601220 (+)
G78772 NA other upstream 41257 36258160 ~ 36350995 (+)
G78759 NA other upstream 201413 36110851 ~ 36190839 (+)
LOC120562279 NA other upstream 504080 35865842 ~ 35888172 (+)
LOC120562275 NA other upstream 618264 35743295 ~ 35773988 (+)
G78594 NA other upstream 983570 35405375 ~ 35408682 (+)
LOC120562456 dennd4b other downstream 115735 36580965 ~ 36670029 (+)
LOC120562457 NA other downstream 220706 36685936 ~ 36703993 (+)
G78888 NA other downstream 373992 36839222 ~ 36939954 (+)
G78989 NA other downstream 965941 37431171 ~ 37432679 (+)
G79007 LOC103364590,LOC102314205,LOC102798195 other downstream 1065460 37530690 ~ 37550602 (+)

Expression


Co-expression Network