LOC120562456 (dennd4b)


Basic Information

Item Value
gene id LOC120562456
gene name dennd4b
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36580965 ~ 36670029 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU105471
AGCGTGTGGTTTTTTTGTGACTTGACAACATGGCCGCTGCGGCTCCTCCGACAGCAAACATGGACGTTACATGTGAGAGAAGAATGACCTAAACATGATCCTTCCACTTATCTGTGGGAACAACCAGCACGCGCAACAAGtGGAGGGCAGACAGACGGCATGACCGAGGAGAAATGTCCCCAGCTGGTGGACTACTTTGTAGTGGCAGGACTCGACCCTGGGCCTGGAGGCCCCTAGACGAGGATGGCAAAACCTgcaactcctcctcctcctcctcctcccc
>TU105472
CAACCACAGAGAGTGTAACGTTACATCACATCCAGCCGTTGGGCGGACGGCACCGCGTCTCGCTCCAGTGCGGGACCATAATGTCCTTTACTGGGGGGGCTGAAACGTTGCAAAGGGGGCCCAATGAACGCTGCTGGGGAACAGGtGGAGGGCAGACAGACGGCATGACCGAGGAGAAATGTCCCCAGCTGGTGGACTACTTTGTAGTGGCAGGACTCGACCCTGGGCCTGGAGGCCCCTAGACGAGGATGGCAAAACCTgcaactcctcctcctcctcctcctcccc
>XM_039806169.1
tGGAGGGCAGACAGACGGCATGACCGAGGAGAAATGTCCCCAGCTGGTGGACTACTTTGTAGTGGCAGGACTCGACCGGGCCTGGAGGCCCCTAGACGAGGATGGCAAAACCTgcaactcctcctcctccctcctcccctcgcctccttcctcctcctcctcctcaaCGAAAGGGGTGGAGTCGGGTGAGATTCGTGATCGCGGGCTCTTGGAGGAAGTGCCCGAGGGCTTCACCTGCATCGAGAAGACGCTGGGCGGCCACTCGGCCGAGCTGAGCGCCGGGCTCATCAACAACCCTCACCTGTACCTGTGCTATCACCGATGGACAAAGAaaCTGGCAGACGATGAGCAGGTCCAGGACCTGGTTCTGTATGAGGGGAAGGAGCAGCTGAAGCAGAGCTGGTTCGTCATCGAGACGACGCCCTACAGCCGCTCGGCCAACCTGAGCTCCGGCGGCGCCCCGACGGCCCACCGCGTCTTCCTGACGTACCGCAGGGCCCTGGACTCGCAGGGCCTCCACACGCTGGGGGTCACCGACATCGCCCTGCTGCTGCCCAGCAAAGGGGAGGTCGCCCCGCACACCTTCTGCCGCGTCGACAAGAACCTCAACACCGGCATGTGGGGTCCCGCTCTGTACGTGTGCTACAAGAGAGCGGTGGCCAAAGCCAACGCCCTGGTCTACAAAGCCAGTCTGATCAGCCGGTACCCGGAGGAGGACCTGGAGGCCTTCCCTCTGCCGGAGTCGGTGCCGGTCTTCTGTCTGCCGATGGGCGCCACCGTGGAGAGCTGGCCTCTCAACACCAAGTACCAGCTGCCCGTCTTCTCCACCTTCGTCCTCACCTCCGCCTCCGGGGACAAGGTCTACGGAGCAGCCATCCAGTTCTACGAGTCCTTCTCCCGGGACCTGCTGTCGGAGCGGCAGAGCGTGCGGCTCGGGCTGCTCAGCGTGGTGGACCGGAGGCCCATCACCAGCCGCAGCCTGCAGGTGAAGAAGAGCATCTGTGTCCTCTCCCACTGGCCCTTCTTCACCGTCTTCCAGAAGTTCCTCACCTTCGTGTACAGATACTCCATCTCCGGGCCCCACGTCCTGCCGCTCGAAAAacacATCTCCAGCTTCATGCACAACGTCCCGTTTCCTTCCCCGCAGCGGCCTCGCATCCTCGTTCAGCTCTCTCCGTATGACAACCTGCTGCTCTgccagccggtctcctctcctctcccgcTCAGGTCAGTGTACTGCAGTACCGACACAACCGctgtgtgtgtatctgtgtgtctccaGATGAGCTTCCCTCTGCGCTGGATCTGTCCCTACATCCCTCTGTGTCCGCTGCAGATGGCCGACGTGCTGCTGGCGCCGATGCCCTTCATCGTGGGGGTCCACTCCAGCTACTTCGACCTGTACGACCCCCCCACAGACGTGGTCTGCGTCGACCTGGACACCAACACCATCTTCCAGTCGGACGACAAGAAGCCGTTGTCATGGCGATCGTTACCCAGGAAGCCCGGCAAGACTCTGTTCAACACCCTCACCAACCTCCACAAGACCCTGGAGAAGATTTGCACCCCCGGCCAGGAGGAGGCGACGCTGGAGTTCCTGCTGACGGACTACGACCAGATCTACCGGAGCCAGAAGCAGCTGGAGCTGGAGATCCAGGAGGCCTTCCTCCGCTTCATGAGCTGCCTGCTGCGCGGATACCGAACCTTCCTGCTGCCCATCACCCAGGCGCCATCAGACACCACCACGGACTGCAGCTCCCTGTTCAACCTGCAGGGGTTCCTGAAGTCTCGGGATCGAACGCAGCAGAAGATCTACGGTCAGCTGACCAGGACGCAGATGTTCACTCAGTTCATCGAGGAGTGCTCCTTCGTCAGCGACCGGCACGCCTGCCTCGAGTTCTTTGACGAGTGCGTCCAGAAGGTGGACGTGGAGAAGCCGGAGGAGGTGAGGCTGATCGATCTGGATGAGACTCACAGCGGCGAGCACACCGTCTTCATCATGCCTCCTGAAGAACCGCAGGAAGCGGACGGCTCCGAGTGTCCCGCACTCTACAGTTATGAAACCTTCCCCACCCTGAGGCCGGAGCTCTTTGACCGGCCGCAGGACCAGCTCCGGGTCCCGGCAAAGGGCAGCGCCCCCAGCAGCCCCGCGCCACGCCGCACCAAACAGGAGATCAAGTTGGCCCAGAAGCGAGCTCAGAAGTACTCAGCGGTGCCGGACATGTGGTCCAAGTGCCTGCTGGGTCACTGCTACGGCCTCTGGTTCATCTACCTGCCCACCTTCGTGCGGGCCGAGAGCGCCAAGGTGCGCGCGCTGCACACGGCCTACGACGTCCTCAAACACATGGAGAACCGCAAGGTGGTGCTGCCGGACGAG

Function

symbol description
dennd4b Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of Rab protein signal transduction. Predicted to be active in cytoplasmic vesicle. Orthologous to human DENND4B (DENN domain containing 4B).

NR:

description
PREDICTED: DENN domain-containing protein 4B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105471 False 283 lncRNA 0.55 2 36580965 36629043
TU105472 False 288 lncRNA 0.60 2 36612510 36629043
XM_039806169.1 True 2377 mRNA 0.63 19 36628901 36670029

Neighbor

gene id symbol gene type direction distance location
LOC120563185 NA coding upstream 39435 36528481 ~ 36541530 (+)
LOC120563182 NA coding upstream 197869 36368694 ~ 36383096 (+)
nat16l NA coding upstream 213940 36360700 ~ 36367025 (+)
LOC120563177 NA coding upstream 390550 36178207 ~ 36190415 (+)
LOC120563175 NA coding upstream 451723 36111050 ~ 36129242 (+)
atp2c1 LOC103369286 coding downstream 90481 36760510 ~ 36792668 (+)
LOC120563178 NA coding downstream 139531 36809560 ~ 36829422 (+)
aldh5a1 aldh5a1 coding downstream 185390 36855419 ~ 36869334 (+)
pik3r4 pik3r4 coding downstream 225360 36895389 ~ 36924827 (+)
LOC120562694 NA coding downstream 654872 37324901 ~ 37326438 (+)
G78813 NA non-coding upstream 73151 36446647 ~ 36507814 (+)
G78798 NA non-coding upstream 165081 36398049 ~ 36415884 (+)
G78770 NA non-coding upstream 241411 36335117 ~ 36339554 (+)
G78776 NA non-coding upstream 291811 36288792 ~ 36289154 (+)
LOC120563188 NA non-coding upstream 408801 36161780 ~ 36172164 (+)
G78825 NA non-coding downstream 14804 36684833 ~ 36720480 (+)
G78865 NA non-coding downstream 22169 36692198 ~ 36698972 (+)
G78866 NA non-coding downstream 24074 36694103 ~ 36698507 (+)
G78870 NA non-coding downstream 82062 36752091 ~ 36794092 (+)
G78871 NA non-coding downstream 83086 36753115 ~ 36907622 (+)
LOC120563181 LOC107378893,LOC103370072 other upstream 115735 36392252 ~ 36465230 (+)
G78772 NA other upstream 229970 36258160 ~ 36350995 (+)
G78759 NA other upstream 390126 36110851 ~ 36190839 (+)
LOC120562279 NA other upstream 692793 35865842 ~ 35888172 (+)
LOC120562275 NA other upstream 806977 35743295 ~ 35773988 (+)
LOC120562457 NA other downstream 15907 36685936 ~ 36703993 (+)
G78888 NA other downstream 169193 36839222 ~ 36939954 (+)
G78989 NA other downstream 761142 37431171 ~ 37432679 (+)
G79007 LOC103364590,LOC102314205,LOC102798195 other downstream 860661 37530690 ~ 37550602 (+)
cmtm7 cmtm7 other downstream 1208887 37878916 ~ 37888006 (+)

Expression


Co-expression Network