G78871


Basic Information

Item Value
gene id G78871
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36753115 ~ 36907622 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU105527
tcccagctgctgctaacgctgctaacgggtgtcgtagcttcccggcccctgtggcaagtttgaagaaggaaacatgggaGGACCAACGCGTATTAGAAATTCCAAATTTCAaggaacagaaaaagaaaagagcgagagaccggctttttgaaccgtggaggctaccgtagctgtagtACGTACTCTGAACTGCGTGGTGAGGGAGAGCCGATTGAGATaaatgatctcaacgctagattgGGAGAAACtcttacacactggacctttaacttATCTTTTTGATTCACACTTTCCTCTTTCATCTGCTGTTCTCATTCTTAATATATAGAATTTAAAGGGACAGTTTACCTTGCTGTCGTTCTACCTctacctttctttttttttttaaccgaaaCAGTAGTGCATTGAACACCCTGGTGTGTGCGCGCAAGTGCTCTTCCTTTTTAAATCAATCATTCTAGTGCGATCCATTTGTACTCGCAAGTCAGACAACCTTCGATTAACCAAGTTCACAATCCAGCCAggctgctccgtgcatcaacagAAGTTAAAGCTGTAGGAACATACAGTTTatcagcacttctgtcttaGTTGTGTCTCACgaaatcagtcgtacacacagtcctgtcctgtcctatcGTCTATCTGTGGTCATGTTGCTAGGACACTATCTTGCACTCGGCGCAACGCAACGCAACgcaacgcaagtgtctttgctagtttagcaaatgcacctgcgcccatctgtgcgcccatctgtgcgcccatctgtgcgcctgctcttacagggaggtgtgttcaggtgcattctggggcgtgctggtcttacagggaggtgtgttcaggtgcattctggggcgtgctgatcttacagggaggtgtgttcaggtgcattctggggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggtgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtattgctatcttgaggcagcaggaagtgatggtagcctcgtgagagcgtcctgatctggcgagctccagttttccactcgcagatcagtctggcatcttgagatagagaacatttggagccgctcgccaaacgaccgaccaatcagcgttggttttgaggcgggtttaggtggttttatccaatcagctaaccaggattttcagacagcggaccaggaacctgaaatggggccttttattcctaaattctcgttacacaaagagcaaatctcctttaccgacatgctgcgtgcttgctgagctaacgagctaacgagctatgctttaactgcagcagcagcaggggtagcctggcttgtggttgtattttttaatacgcttcgtggatctgattggttgatttggcccagtctatcaccaacataggtgatagactgatggtttatccaatcagctaaccagtagtttcgccccttcccaaaagttctccaacggaaagttcccagaatggatatgccgagcaaatgcgaagcgatccatctggcggagtcaggttaaagtgatcgcgccattgaccgacaaaaacctggtctaaagtcaataacgcagcatttcattgttattttaacagagcgttagtaaaatgctcctaggctcgtgcacagcgcgcacacactatgcttgttacacacacagcagcacacacacacacagaaggttACAAATAAAAACgttagggtgtaaatcctccatcataacagcaatgctccaaggtccaaacacgCCTGtatttaaagggaatgggagatgatctctgattggttgattgcatgttacgcccaaaacacacctctgattaatgaagacactaaggacaaccctttaggaccaggcgcccggcgcacagacACTTTTAAACcaccgttaaactagcaaaagcggatttggacacgccctaaacacacctgctcctttagatcgttaaaatagggccctatgagTCATTTTCAGATCTGACCTGACCAAACAAAAGGTAAACTTCTTATTATTATCCGACCAAAGCCGAGCATCCTACACATTTCGAGACTTTAGTGGCGTTCTGGGAGACTCTTGtttggtcgtttttttttttttaattctgatTTGAAGAATGATTCCAGTGTCTAAAAACGTTAGCGGGCCACCGTGATGAACCCAGTTCAGAAACCTTTTAAACTATGCTGTAGCTTCGTGTTCAAACTGCCCGGCAGCCTTTGCCCCTCTGGAAGAACCCCCAAACGAACGAAAGAGCTCAAGTTTTCTAAGTTTTCCTCGAGCGTTGAATGATGGATGGCTTTCGcacattttattacttttataaaacaaaaacagagagagagagagagagattgggaGAGATCCAACATGTTCCAACTCTCAGTGGCTTCACGTTTCAGGGAGTTTGAAAAGTCTCAGCTTTTCTCGTTTGGAGATTTCCTCGACAGACGTACCGAGAGACCATCAGAAGTCTCCTGGAGTTTGAAGTCTTCTTGAAGTCTGCCCTGCGTTTCCAATCCTTTATTCGACcctatttttcaaaataaaatcctaaCTGTCGTCCTTGGTCACACCGGTAAAGATAGATCTGACATCGTACAACTCTCCCACTCTCAGTCCGCTGCAAGACTTCCCTTTGCTCCGAATtaaaaaaggtgcagtaggtaagactttatcaaactacctttctgtcatatttgctgaaactgaccctatgttccagtagaactacatgaagcaggtcatgaAGCatcacctacagcctgtagtgtgaaaatcgctgttcagatgcaccaatcagggccagggggaggtgtctaactgtttagatgcaccaatcagggccaggggttgggggtgtctaactgtttagatgcaccaatcagggccagggggtgggggtgtctaactgttcagatgcaccaatcagggccagggagggtgtctaactgttaagatgcaccaatcagggccagggagggtgtctaactgtttagatgcaccaatcagggccagggagaggtgtctaactgttaagatgcaccaatcagggccaggggagtgtctaactgttaagatgcaccaatcagggccagggggagtgtataactgcgtgtcaatcactgctcatgcacacgcattcattctccattgtggggggaggggcttaggagacagttttgggctttagccaaaagggggggagggaaggATTTAGAAGTTGTCGATTGTTATATTTTTggggctaagtcctggatcttcccagtcctacctacagcaccttgaACCCATCTGGATgtccattttcttttatttctttttaaaaacagggggaaactgaaatatcacaccGACACAGCCGATCCCTCCGGACATGCACGGACCCACCAAAGGCCTGCGCCGGTTTTTCCTGCCTTCACCCATTCGTCGGCTCAGTACGTTCCTTGTGCGAGCTCTTCGGGTTGCCGGATCGTCTCCGAGCCGACATCCAACTTTTCTTTCCCCGGGTGTTAAATGAAGACAAAGAGACGCTGGACTAACACAGAGCTACGGAGGACAGGAAGGAAGCGCACGTCACTCCGACTTCCAGCAGCGAGGGGAAGGATACAAGCGTGCGAAGGGCAGCAGggatcctcctcttcctccctcacaggtggtggtggtggggg
>TU105529
tcccagctgctgctaacgctgctaacgggtgtcgtagcttcccggcccctgtggcaagtttgaagaaggaaacatgggaGGACCAACGCGTATTAGAAATTCCAAATTTCAaggaacagaaaaagaaaagagcgagagaccggctttttgaaccgtggaggctaccgtagctgtagtACGTACTCTGAACTGCGTGGTGAGGGAGAGCCGATTGAGATaaatgatctcaacgctagattgGGAGAAACtcttacacactggacctttaacttATCTTTTTGATTCACACTTTCCTCTTTCATCTGCTGTTCTCATTCTTAATATATAGAATTTAAAGGGACAGTTTACCTTGCTGTCGTTCTACCTctacctttctttttttttttaaccgaaaCAGTAGTGCATTGAACACCCTGGTGTGTGCGCGCAAGTGCTCTTCCTTTTTAAATCAATCATTCTAGTGCGATCCATTTGTACTCGCAAGTCAGACAACCTTCGATTAACCAAGTTCACAATCCAGCCAggctgctccgtgcatcaacagAAGTTAAAGCTGTAGGAACATACAGTTTatcagcacttctgtcttaGTTGTGTCTCACgaaatcagtcgtacacacagtcctgtcctgtcctatcGTCTATCTGTGGTCATGTTGCTAGGACACTATCTTGCACTCGGCGCAACGCAACGCAACgcaacgcaagtgtctttgctagtttagcaaatgcacctgcgcccatctgtgcgcccatctgtgcgcccatctgtgcgcctgctcttacagggaggtgtgttcaggtgcattctggggcgtgctggtcttacagggaggtgtgttcaggtgcattctggggcgtgctgatcttacagggaggtgtgttcaggtgcattctggggcgtgctggtcttacagggaggtgtgttcaggtgcattctggggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtattgctatcttgaggcagtgggaag
>TU105530
ggaggtgtgtttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggtgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtattgctatcttgaggcagcaggaagtgatggtagcctcgtgagagcgtcctgatctggcgagctccagttttccactcgcagatcagtctggcatcttgagatagagaacatttggagccgctcgccaaacgaccgaccaatcagcgttggttttgaggcgggtttaggtggttttatccaatcagctaaccaggattttcagacagcggaccaggaacctgaaatggggccttttattcctaaattctcgttacacaaagagcaaatctcctttaccgacatgctgcgtgcttgctgagctaacgagctaacgagctatgctttaactgcagcagcagcaggggtagcctggcttgtggttgtattttttaatacgcttcgtggatctgattggttgatttggcccagtctatcaccaacataggtgatagactgatggtttatccaatcagctaaccagtagtttcgccccttcccaaaagttctccaacggaaagttcccagaatggatatgccgagcaaatgcgaagcgatccatctggcggagtcaggttaaagtgatcgcgccattgaccgacaaaaacctggtctaaagtcaataacgcagcatttcattgttattttaacagagcgttagtaaaatgctcctaggctcgtgcacagcgcgcacacactatgcttgttacacacacagcagcacacacacacacagaaggttACAAATAAAAACgttagggtgtaaatcctccatcataacagcaatgctccaaggtccaaacacgCCTGtatttaaagggaatgggagatgatctctgattggttgattgcatgttacgcccaaaacacacctctgattaatgaagacactaaggacaaccctttaggaccaggcgcccggcgcacagacACTTTTAAACcaccgttaaactagcaaaagcggatttggacacgccctaaacacacctgctcctttagatcgttaaaatagggccctatgagTCATTTTCAGATCTGACCTGACCAAACAAAAGGTAAACTTCTTATTATTATCCGACCAAAGCCGAGCATCCTACACATTTCGAGACTTTAGTGGCGTTCTGGGAGACTCTTGtttggtcgtttttttttttttaattctgatTTGAAGAATGATTCCAGTGTCTAAAAACGTTAGCGGGCCACCGTGATGAACCCAGTTCAGAAACCTTTTAAACTATGCTGTAGCTTCGTGTTCAAACTGCCCGGCAGCCTTTGCCCCTCTGGAAGAACCCCCAAACGAACGAAAGAGCTCAAGTTTTCTAAGTTTTCCTCGAGCGTTGAATGATGGATGGCTTTCGcacattttattacttttataaaacaaaaacagagagagagagagagagattgggaGAGATCCAACATGTTCCAACTCTCAGTGGCTTCACGTTTCAGGGAGTTTGAAAAGTCTCAGCTTTTCTCGTTTGGAGATTTCCTCGACAGACGTACCGAGAGACCATCAGAAGTCTCCTGGAGTTTGAAGTCTTCTTGAAGTCTGCCCTGCGTTTCCAATCCTTTATTCGACcctatttttcaaaataaaatcctaaCTGTCGTCCTTGGTCACACCGGTAAAGATAGATCTGACATCGTACAACTCTCCCACTCTCAGTCCGCTGCAAGACTTCCCTTTGCTCCGAATtaaaaaaggtgcagtaggtaagactttatcaaactacctttctgtcatatttgctgaaactgaccctatgttccagtagaactacatgaagcaggtcatgaAGCatcacctacagcctgtagtgtgaaaatcgctgttcagatgcaccaatcagggccagggggaggtgtctaactgtttagatgcaccaatcagggccaggggttgggggtgtctaactgtttagatgcaccaatcagggccagggggtgggggtgtctaactgttcagatgcaccaatcagggccagggagggtgtctaactgtttagatgcaccaatcagggccagggagggtgtctaactgttaagatgcaccaatcagggccagggagaggtgtctaactgttaagatgcaccaatcagggccagggagggtgtctaactgtttagatgcaccaatcagggccagggagagtgtctaactgttaagatgcaccaatcagggccagggggagtgtataactgcgtgtcaatcactgctcatgcacacgcattcattctccattgtggggggaggggcttaggagacagttttgggctttagccaaaagggggggagggaaggATTTAGAAGTTGTCGATTGTTATATTTTTggggctaagtcctggatcttcccagtcctacctacagcaccttgaACCCATCTGGATgtccattttcttttatttctttttaaaaacagggggaaactgaaatatcacaccGACACAGCCGATCCCTCCGGACATGCACGGACCCACCAAAGGCCTGCGCCGGTTTTTCCTGCCTTCACCCATTCGTCGGCTCAGTACGTTCCTTGTGCGAGCTCTTCGGGTTGCCGGATCGTCTCCGAGCCGACATCCAACTTTTCTTTCCCCGGGTGTTAAATGAAGACAAAGAGACGCTGGACTAACACAGAGCTACGGAGGACAGGAAGGAAGCGCACGTCACTCCGACTTCCAGCAGCGAGGGGAAGGATACAAGCGTGCGAAGGGCAGCAGggatcctcctcttcctccctcacaggtggtggtggtggggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105527 True 3776 lncRNA 0.48 3 36753115 36758299
TU105529 False 1140 lncRNA 0.49 2 36753115 36907622
TU105530 False 2985 lncRNA 0.49 4 36754204 36758299

Neighbor

gene id symbol gene type direction distance location
LOC120563185 NA coding upstream 211585 36528481 ~ 36541530 (+)
LOC120563182 NA coding upstream 370019 36368694 ~ 36383096 (+)
nat16l NA coding upstream 386090 36360700 ~ 36367025 (+)
LOC120563177 NA coding upstream 562700 36178207 ~ 36190415 (+)
LOC120563175 NA coding upstream 623873 36111050 ~ 36129242 (+)
LOC120562694 NA coding downstream 417279 37324901 ~ 37326438 (+)
LOC120561884 NA coding downstream 428449 37336071 ~ 37351571 (+)
LOC120561883 NA coding downstream 447361 37354983 ~ 37359625 (+)
LOC120562463 NA coding downstream 454602 37362224 ~ 37377784 (+)
LOC120561882 NA coding downstream 479495 37387117 ~ 37391992 (+)
G78825 NA non-coding upstream 32635 36684833 ~ 36720480 (+)
G78865 NA non-coding upstream 54143 36692198 ~ 36698972 (+)
G78866 NA non-coding upstream 54608 36694103 ~ 36698507 (+)
G78863 NA non-coding upstream 85752 36666597 ~ 36667363 (+)
G78862 NA non-coding upstream 94809 36658008 ~ 36658306 (+)
G78907 NA non-coding downstream 6146 36913768 ~ 36980636 (+)
G78889 NA non-coding downstream 95961 37003583 ~ 37048033 (+)
G78921 NA non-coding downstream 101812 37009434 ~ 37010480 (+)
G78922 NA non-coding downstream 111582 37019204 ~ 37020468 (+)
G78925 NA non-coding downstream 134069 37041691 ~ 37089414 (+)
LOC120562457 NA other upstream 49122 36685936 ~ 36703993 (+)
LOC120562456 dennd4b other upstream 83086 36580965 ~ 36670029 (+)
LOC120563181 LOC107378893,LOC103370072 other upstream 287885 36392252 ~ 36465230 (+)
G78772 NA other upstream 402120 36258160 ~ 36350995 (+)
G78759 NA other upstream 562276 36110851 ~ 36190839 (+)
G78989 NA other downstream 523549 37431171 ~ 37432679 (+)
G79007 LOC103364590,LOC102314205,LOC102798195 other downstream 623068 37530690 ~ 37550602 (+)
cmtm7 cmtm7 other downstream 971294 37878916 ~ 37888006 (+)
nek11 nek11,LOC102796711 other downstream 1148794 38056416 ~ 38145804 (+)
G79351 NA other downstream 1262432 38170054 ~ 38324620 (+)

Expression


Co-expression Network