G78888


Basic Information

Item Value
gene id G78888
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36839222 ~ 36939954 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU105556
ctgagactattttacAACGGTGCCGCagaagatgattgtgattggtttaaagaaaatgccaataaaccagagcacggttttctcccatccaggaatgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtctttgtgtgtgtgtgtgtgtgcgtgtgtctctctgtctgtatgtgtgtgtgtgtgtgtctctctctgtgtgtctgtaactgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtatctgtgtctctctgtatctgtgtgtgtgtgtgtatgtgtgacgtCTAGAAAAACAAGCTGGAGCTGATGATCATGAAATAACACTTTCAAATCTATCATTAACACTTAAAACAAATACGGAGAGAATTTAAATCCTAAGATTacaagataataataataataataataagggtTCTGCAActttctttcagcagcgggATGGAAAAACAGCCGCATGCGAGTCCAAATCAAACATTTCTGATCAGTTatggaaaaacattttaatgttgaTGTGATTCCTTCAAACATTCATTCATAATCCGCCTCCGCTGGCTCCAGGGACATAGCACCTGATGTGTAGAAAAAGTCATCTGTGAAGGAGCTTTAAACACTCAACACACAATCAGGACCTCACATTCAAGAGTTTTCTATTGCAAAATGGTgaaggtttaaaaaataaaaataaaaagagagctCTGAGATAAGAAAGAACAACTTTTCCTGAAGGCGTTTTTAAAAACCTAAATTTAATTAGCAGTTTAAATGTCCCAGAATACCCTCAGCTGTGAATGAATTCATAAAGTCTCTTTGGTGTTTTCCCTGGaagatgcatgtgtgtgtatgtatgttttttcttttttttgggttgTACGGTGGTGATCCGGAGGCGTCCCCTCCTCATCGGCTCTTGGTCAGACAGAGGCTCTCGCACTCGTCTTGCGTCTTGAAGCGGTTTCCGTTGCCGCCGCAGCCGCCGTACCAGAAGCGAGAGCATTCCCTCTGCTCGGTGTCGAAGAACCACATCATGGTGTAGTTCTGGCAGCCGCCCTGGTCCTGGCTGAGGAAA
>TU105557
GTAAAAttctttattgtttgttttttacatcaAGCACCATTGTTCGGTTTCATAAACCCCAGTCACGGATTTCCaggtacagacagacagacagacagacgatgACACCGACTGAGCAGTGAGACACGTTTAGGACCCTTTGACCCTTTTATGACCGTTCTGCAGTTTAGTTTGATCCTTTCCAGAGTCCAAAGTTTGGTCCGTCAGTTGAAATAATATTTTCTTCAGCAGCTTGTTGTTCAGATGTGAGGGGGCTGCAGCCAAACAGGGGGGGCTCTGAGGCCAGCCCCCCTCTTCCTAGGAATTTGGGGAGTTTAGTTACTTACCGGTAATGGGAGTTAATGTTCTAGAGTAGGGGTTGACCGATACTGGAACcaatgtgcatttacagtaaaaaaaatatcaaaatcttttggaatgttacaaattCCCAACACAAGTAGCAATGCCACAGTGTCAAAATACTCGTGATACGAGTatatgttttgctttttttttttaatactaaaTGTAACTAAACAAAATGtccatttcaaaataatatataGAACTACTGAAGTGTTGAGTGAAAGCgaagcagagggagagacacagagctgtagcacacttttgatttttttttaactttatcgGTTTTATGGTCAAATAAAACCCCGATACAGATAATGTGCAGATTGCCAGATATCGTCCCTGATAAGCGAGCAGGCCGATGAGGGCCGGGTCCCTGGTTTGTGCTggtctgacctgctgccctccAGCTGGAGCGTCTCGTCTGCCCAACAGGCTGAGTAACTCACCCTGACCACCATGACTCCAACTCTACGGTAGGAGcttcctgtgtctctgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtggttttgtgtatgtgta
>TU105558
GTAAAAttctttattgtttgttttttacatcaAGCACCATTGTTCGGTTTCATAAACCCCAGTCACGGATTTCCaggtacagacagacagacagacagacgatgACACCGACTGAGCAGTGAGACACGTTTAGGACCCTTTGACCCTTTTATGACCGTTCTGCAGTTTAGTTTGATCCTTTCCAGAGTCCAAAGTTTGGTCCGTCAGTTGAAATAATATTTTCTTCAGCAGCTTGTTGTTCAGATGTGAGGGGGCTGCAGCCAAACAGGGGGGGCTCTGAGGCCAGCCCCCCTCTTCCTAGGAATTTGGGGAGTTTAGTTACTTACCGGTAATGGGAGTTAATGTTCTAGAGTAGGGGTTGACCGATACTGGAACcaatgtgcatttacagtaaaaaaaatatcaaaatcttttggaatgttacaaattCCCAACACAAGTAGCAATGCCACAGTGTCAAAATACTCGTGATACGAGTatatgttttgctttttttttttaatactaaaTGTAACTAAACAAAATGtccatttcaaaataatatataGAACTACTGAAGTGTTGAGTGAAAGCgaagcagagggagagacacagagctgtagcacacttttgatttttttttaactttatcgGTTTTATGGTCAAATAAAACCCCGATACAGATAATGTGCAGATTGCCAGATATCGTCCCTGATAAGCGAGCAGGCCGATGAGGGCCGGGTCCCTGGTTTGTGCTggtctgacctgctgccctccAGCTGGAGCGTCTCGTCTGCCCAACAGGCTGAGTAACTCACCCTGACCACCATGACTCCAACTCTACGGTAGGAGcttcctgtgtctctgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtctctgtctctgtgtgtgtctctgtctttgtgtgtgtgtgtgtgtgtgcgtgtgtgtctctgtctgtgtgtctgtatgtgtgtgtgtctgtttctgtgtctgtgtgtgtctctgtgtatctgtgtctctctctgtatgtgtctgtgtgtgtgtgtgtgtctctgtgtgtgtatgtctctgtgtgtctatgtgtgtgtgtgtgtctctgtctttgtgtgtgtgtgtgtgtgcgtgtgtctctctgtctgtatgtgtgtgtgtgtgtgtctctctctgtgtgtctgtaactgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtatctgtgtctctctgtatctgtgtgtgtgtgtgtatgtgtgacgtCTAGAAAAACAAGCTGGAGCTGATGATCATGAAATAACACTTTCAAATCTATCATTAACACTTAAAACAAATACGGAGAGAATTTAAATCCTAAGATTacaagataataataataataataataagggtTCTGCAActttctttcagcagcgggATGGAAAAACAGCCGCATGCGAGTCCAAATCAAACATTTCTGATCAGTTatggaaaaacattttaatgttgaTGTGATTCCTTCAAACATTCATTCATAATCCGCCTCCGCTGGCTCCAGGGACATAGCACCTGATGTGTAGAAAAAGTCATCTGTGAAGGAGCTTTAAACACTCAACACACAATCAGGACCTCACATTCAAGAGTTTTCTATTGCAAAATGGTgaaggtttaaaaaataaaaataaaaagagagctCTGAGATAAGAAAGAACAACTTTTCCTGAAGGCGTTTTTAAAAACCTAAATTTAATTAGCAGTTTAAATGTCCCAGAATACCCTCAGCTGTGAATGAATTCATAAAGTCTCTTTGGTGTTTTCCCTGGaagatgcatgtgtgtgtatgtatgttttttcttttttttgggttgTACGGTGGTGATCCGGAGGCGTCCCCTCCTCATCGGCTCTTGGTCAGACAGAGGCTCTCGCACTCGTCTTGCGTCTTGAAGCGGTTTCCGTTGCCGCCGCAGCCGCCGTACCAGAAGCGAGAGCATTCCCTCTGCTCGGTGTCGAAGAACCACATCATGGTGTAGTTCTGGCAGCCGCCCTGGTCCTGGCTGAGGAAA
>TU105559
GTAAAAttctttattgtttgttttttacatcaAGCACCATTGTTCGGTTTCATAAACCCCAGTCACGGATTTCCaggtacagacagacagacagacagacgatgACACCGACTGAGCAGTGAGACACGTTTAGGACCCTTTGACCCTTTTATGACCGTTCTGCAGTTTAGTTTGATCCTTTCCAGAGTCCAAAGTTTGGTCCGTCAGTTGAAATAATATTTTCTTCAGCAGCTTGTTGTTCAGATGTGAGGGGGCTGCAGCCAAACAGGGGGGGCTCTGAGGCCAGCCCCCCTCTTCCTAGGAATTTGGGGAGTTTAGTTACTTACCGGTAATGGGAGTTAATGTTCTAGAGTAGGGGTTGACCGATACTGGAACcaatgtgcatttacagtaaaaaaaatatcaaaatcttttggaatgttacaaattCCCAACACAAGTAGCAATGCCACAGTGTCAAAATACTCGTGATACGAGTatatgttttgctttttttttttaatactaaaTGTAACTAAACAAAATGtccatttcaaaataatatataGAACTACTGAAGTGTTGAGTGAAAGCgaagcagagggagagacacagagctgtagcacacttttgatttttttttaactttatcgGTTTTATGGTCAAATAAAACCCCGATACAGATAATGTGCAGATTGCCAGATATCGTCCCTGATAAGCGAGCAGGCCGATGAGGGCCGGGTCCCTGGTTTGTGCTggtctgacctgctgccctccAGCTGGAGCGTCTCGTCTGCCCAACAGGCTGAGTAACTCACCCTGACCACCATGACTCCAACTCTACGGTAGGAGcttcctgtgtctctgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtctctgtctctgtgtgtgtctctgtctttgtgtgtgtgtgtgtgtgtgcgtgtgtgtctctgtctgtgtgtctgtatgtgtgtgtgtctgtgtctgtgtgtgtctctctctctgtgtgtctgtaactgtgtctctctgtgtgtgtgtctctgtgtgtgtttctgtgtctgtgtgtgtctctgtgtatctgtgtctctctctgtatgtgtctgtgtgtgtgtgtgtgtctctgtgtgtgtatgtctctgtgtgtctatgtgtgtgtgtgtgtctctgtctttgtgtgtgtgtgtgtgtgcgtgtgtctctctgtctgtatgtgtgtgtgtgtgtgtctctctctgtgtgtctgtaactgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtatctgtgtctctctgtatctgtgtgtgtgtgtgtatgtgtgacgtCTAGAAAAACAAGCTGGAGCTGATGATCATGAAATAACACTTTCAAATCTATCATTAACACTTAAAACAAATACGGAGAGAATTTAAATCCTAAGATTacaagataataataataataataataagggtTCTGCAActttctttcagcagcgggATGGAAAAACAGCCGCATGCGAGTCCAAATCAAACATTTCTGATCAGTTatggaaaaacattttaatgttgaTGTGATTCCTTCAAACATTCATTCATAATCCGCCTCCGCTGGCTCCAGGGACATAGCACCTGATGTGTAGAAAAAGTCATCTGTGAAGGAGCTTTAAACACTCAACACACAATCAGGACCTCACATTCAAGAGTTTTCTATTGCAAAATGGTgaaggtttaaaaaataaaaataaaaagagagctCTGAGATAAGAAAGAACAACTTTTCCTGAAGGCGTTTTTAAAAACCTAAATTTAATTAGCAGTTTAAATGTCCCAGAATACCCTCAGCTGTGAATGAATTCATAAAGTCTCTTTGGTGTTTTCCCTGGaagatgcatgtgtgtgtatgtatgttttttcttttttttgggttgTACGGTGGTGATCCGGAGGCGTCCCCTCCTCATCGGCTCTTGGTCAGACAGAGGCTCTCGCACTCGTCTTGCGTCTTGAAGCGGTTTCCGTTGCCGCCGCAGCCGCCGTACCAGAAGCGAGAGCATTCCCTCTGCTCGGTGTCGAAGAACCACATCATGGTGTAGTTCTGGCAGCCGCCCTGGTCCTGGCTGAGGAAA
>TU105561
GTAAAAttctttattgtttgttttttacatcaAGCACCATTGTTCGGTTTCATAAACCCCAGTCACGGATTTCCaggtacagacagacagacagacagacgatgACACCGACTGAGCAGTGAGACACGTTTAGGACCCTTTGACCCTTTTATGACCGTTCTGCAGTTTAGTTTGATCCTTTCCAGAGTCCAAAGTTTGGTCCGTCAGTTGAAATAATATTTTCTTCAGCAGCTTGTTGTTCAGATGTGAGGGGGCTGCAGCCAAACAGGGGGGGCTCTGAGGCCAGCCCCCCTCTTCCTAGGAATTTGGGGAGTTTAGTTACTTACCGGTAATGGGAGTTAATGTTCTAGAGTAGGGGTTGACCGATACTGGAACcaatgtgcatttacagtaaaaaaaatatcaaaatcttttggaatgttacaaattCCCAACACAAGTAGCAATGCCACAGTGTCAAAATACTCGTGATACGAGTatatgttttgctttttttttttaatactaaaTGTAACTAAACAAAATGtccatttcaaaataatatataGAACTACTGAAGTGTTGAGTGAAAGCgaagcagagggagagacacagagctgtagcacacttttgatttttttttaactttatcgGTTTTATGGTCAAATAAAACCCCGATACAGATAATGTGCAGATTGCCAGATATCGTCCCTGATAAGCGAGCAGGCCGATGAGGGCCGGGTCCCTGGTTTGTGCTggtctgacctgctgccctccAGCTGGAGCGTCTCGTCTGCCCAACAGGCTGAGTAACTCACCCTGACCACCATGACTCCAACTCTACGGTAGGAGcttcctgtgtctctgtctctgtgtgtgtgtgtctctgtctctgtgtgtgtctctgtctttgtgtgtgtgtgtgtgtgtgcgtgtgtgtctctgtctgtgtgtctgtatgtgtgtgtgtctgtgtctgtgtgtgtctctctctctgtgtgtctgtaactgtgtctctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtatctgtgtctctctgtatctgtgtgtgtgtgtgtatgtgtgacgtCTAGAAAAACAAGCTGGAGCTGATGATCATGAAATAACACTTTCAAATCTATCATTAACACTTAAAACAAATACGGAGAGAATTTAAATCCTAAGATTacaagataataataataataataataagggtTCTGCAActttctttcagcagcgggATGGAAAAACAGCCGCATGCGAGTCCAAATCAAACATTTCTGATCAGTTatggaaaaacattttaatgttgaTGTGATTCCTTCAAACATTCATTCATAATCCGCCTCCGCTGGCTCCAGGGACATAGCACCTGATGTGTAGAAAAAGTCATCTGTGAAGGAGCTTTAAACACTCAACACACAATCAGGACCTCACATTCAAGAGTTTTCTATTGCAAAATGGTgaaggtttaaaaaataaaaataaaaagagagctCTGAGATAAGAAAGAACAACTTTTCCTGAAGGCGTTTTTAAAAACCTAAATTTAATTAGCAGTTTAAATGTCCCAGAATACCCTCAGCTGTGAATGAATTCATAAAGTCTCTTTGGTGTTTTCCCTGGaagatgcatgtgtgtgtatgtatgttttttcttttttttgggttgTACGGTGGTGATCCGGAGGCGTCCCCTCCTCATCGGCTCTTGGTCAGACAGAGGCTCTCGCACTCGTCTTGCGTCTTGAAGCGGTTTCCGTTGCCGCCGCAGCCGCCGTACCAGAAGCGAGAGCATTCCCTCTGCTCGGTGTCGAAGAACCACATCATGGTGTAGTTCTGGCAGCCGCCCTGGTCCTGGCTGAGGAAACAGCTGTCTGGATGAAGACACGTTACAGTGGTAGACATGACTCAGCATTTCACACTCCCTTACTAATGGCTTCTGGGCGATCAAAGCTGCGCCGGGAGCCGCTCCCTATCACGGAAACAGAGCACCAtatagtgtgttcgccattttgCAGTGGTTTCCGAATTCTCCGTGACTATATAGtcatacccacaatgcacagctgatttgagtgtacatacgaTGTACCCTGCAttttacccacaatgcaacgctGCAGTGTTTTctcggaggagaagaagaagaagaagaagcactcacggaaactgaaaaggaaaaatggagcgggCTTTTGTGtctaaaccatagactgtataacagtctatggtttagaCAGTAGGGGGTAAACTAGGGGGGTAACTTTGGGATCTCAA
>TU105562
gtgtgtgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctgtgtgtctgtaactgtgtctctctgtgtgtgtgtctctgtgtgtgtgtgtgtctgtgtctctgtgtgtgtttctgtgtctgtgtgtgtctctgtgtatctgtgtctctctctgtatgtgtctgtgtgtgtgtgtgtgtctctgtgtgtgtatgtctctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgagtgtgtgttctcACTGCTGAGGGCGGAGAGGAAGACTCTGAAGAAGCGCTGGGCGTAGCTCTGCTCGTCGGCCCTCAGTCGGTCCAGGTGGATCAGGTGCTGCGCTACCGGCACACTGACCAGATCCTCCACCTGGGCCCGGTCGTAGCGCTCGCCAACCGTCACCACAAACAGCGCCACGCCGTCACATTTGGCTTTCTGAATACAGTTACATacatagataggtaggtagatagatagataggtagatagata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105556 False 1128 lncRNA 0.43 2 36839222 36928871
TU105557 False 904 lncRNA 0.44 2 36926712 36938438
TU105558 False 2068 TUCP 0.44 2 36926712 36928871
TU105559 False 2136 lncRNA 0.44 2 36926712 36928871
TU105561 True 2290 lncRNA 0.44 3 36926712 36929281
TU105562 False 547 lncRNA 0.52 3 36910015 36939954

Neighbor

gene id symbol gene type direction distance location
LOC120563178 NA coding upstream 9800 36809560 ~ 36829422 (+)
atp2c1 LOC103369286 coding upstream 46554 36760510 ~ 36792668 (+)
LOC120563185 NA coding upstream 297692 36528481 ~ 36541530 (+)
LOC120563182 NA coding upstream 456126 36368694 ~ 36383096 (+)
nat16l NA coding upstream 472197 36360700 ~ 36367025 (+)
LOC120562694 NA coding downstream 384947 37324901 ~ 37326438 (+)
LOC120561884 NA coding downstream 396117 37336071 ~ 37351571 (+)
LOC120561883 NA coding downstream 415029 37354983 ~ 37359625 (+)
LOC120562463 NA coding downstream 422270 37362224 ~ 37377784 (+)
LOC120561882 NA coding downstream 447163 37387117 ~ 37391992 (+)
G78882 NA non-coding upstream 23246 36812715 ~ 36815976 (+)
G78870 NA non-coding upstream 45130 36752091 ~ 36794092 (+)
G78825 NA non-coding upstream 118742 36684833 ~ 36720480 (+)
G78822 NA non-coding upstream 132613 36500648 ~ 36706609 (+)
G78865 NA non-coding upstream 140250 36692198 ~ 36698972 (+)
G78889 NA non-coding downstream 63629 37003583 ~ 37048033 (+)
G78921 NA non-coding downstream 69480 37009434 ~ 37010480 (+)
G78922 NA non-coding downstream 79250 37019204 ~ 37020468 (+)
G78925 NA non-coding downstream 101737 37041691 ~ 37089414 (+)
G78947 NA non-coding downstream 261237 37201191 ~ 37206248 (+)
LOC120562457 NA other upstream 135229 36685936 ~ 36703993 (+)
LOC120562456 dennd4b other upstream 169193 36580965 ~ 36670029 (+)
LOC120563181 LOC107378893,LOC103370072 other upstream 373992 36392252 ~ 36465230 (+)
G78772 NA other upstream 488227 36258160 ~ 36350995 (+)
G78759 NA other upstream 648383 36110851 ~ 36190839 (+)
G78989 NA other downstream 491217 37431171 ~ 37432679 (+)
G79007 LOC103364590,LOC102314205,LOC102798195 other downstream 590736 37530690 ~ 37550602 (+)
cmtm7 cmtm7 other downstream 938962 37878916 ~ 37888006 (+)
nek11 nek11,LOC102796711 other downstream 1116462 38056416 ~ 38145804 (+)
G79351 NA other downstream 1230100 38170054 ~ 38324620 (+)

Expression


Co-expression Network