LOC120563027


Basic Information

Item Value
gene id LOC120563027
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38501414 ~ 38515075 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU106560
CTCTTCACTCTGCACACTGTTCTCATCGTCATAGTAACGGCCATCATCATCAAAAGGACGTGCATTCGCAAGAAAGCAAACGTGACTGTGCAGCCTCCAGACGCCGTAGAGGAGCTGAGACGTCCAGAGGAACGAGGCCGGGCTGTCTGATATTATCATCTGTAACATATCTGCTCTAATATTACATCACTGGACCTTTATCTCTGATATTATCATCTGTAACATATCTGCTCTAATATTACATCACTGGACCTTTATCTCTGATATTATCATCTGTAACATATCTGCTCTAATATTACATCACTGGACC
>XR_005639893.1
TTTGacccactgctggctgttcggCTGCTTCTCTTCACTCTGCACACTGTTCTCATCGTCATAGTAACGGCCATCATCATCAAAAGGACGTGCATTCGCAAGAAAGCAAACGTGACTGTGCAGCCTCCAGACGCCGTAGAGGAGCTGAGACGTCCAGAGGAACGAGGCCGGGCTGTCTGATATTATCATCTGTAACATATCTGCTCTAATATTACATCACTGGACCTTTATCTCTGATATTATCATCTGTAACATATCTGCTCTAATATTACATCACTGGACCTTTATCTCTGATATTATCATCTGTAACATATCTGCTCTAATATT

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106560 False 310 lncRNA 0.43 3 38501414 38515045
XR_005639893.1 True 327 lncRNA 0.43 3 38501427 38515075

Neighbor

gene id symbol gene type direction distance location
LOC120563017 NA coding downstream 1757 38489974 ~ 38499657 (-)
LOC120562484 NA coding downstream 16549 38482155 ~ 38484865 (-)
LOC120563005 NA coding downstream 26854 38472146 ~ 38474560 (-)
LOC120563012 NA coding downstream 114230 38375662 ~ 38387184 (-)
LOC120563004 NA coding downstream 154713 38344078 ~ 38346701 (-)
trim33l NA coding upstream 392974 38908049 ~ 38945175 (-)
LOC120562487 NA coding upstream 592229 39107304 ~ 39142705 (-)
LOC120562358 LOC101076950 coding upstream 1318078 39833153 ~ 39843176 (-)
LOC120562356 ttc24 coding upstream 1386690 39901765 ~ 39923149 (-)
LOC120562362 NA coding upstream 1610350 40125425 ~ 40175116 (-)
G79540 NA non-coding downstream 41414 38458320 ~ 38460000 (-)
G79534 NA non-coding downstream 45661 38409844 ~ 38455753 (-)
G79537 NA non-coding downstream 47570 38453116 ~ 38453844 (-)
G79544 NA non-coding downstream 83492 38404427 ~ 38417922 (-)
G79545 NA non-coding downstream 84836 38404861 ~ 38416578 (-)
G79563 NA non-coding upstream 13370 38528445 ~ 38555962 (-)
G79567 NA non-coding upstream 37611 38552686 ~ 38553785 (-)
G79728 NA non-coding upstream 70494 38585569 ~ 38617012 (-)
G79740 NA non-coding upstream 112983 38628058 ~ 38628449 (-)
LOC120563038 NA non-coding upstream 126790 38641865 ~ 38642612 (-)
LOC120562482 NA other downstream 177130 38318944 ~ 38324284 (-)
G79484 NA other downstream 279654 38063698 ~ 38221760 (-)
LOC120562477 NA other downstream 296232 38140469 ~ 38205182 (-)
LOC120562474 NA other downstream 530066 37958449 ~ 37971348 (-)
LOC120562472 NA other downstream 704648 37744084 ~ 37796766 (-)
LOC120562485 NA other upstream 1526 38516601 ~ 38522389 (-)
nudt17 nudt17 other upstream 151192 38666267 ~ 38680480 (-)
G79767 NA other upstream 391705 38906780 ~ 38908021 (-)
G79820 NA other upstream 582697 39097772 ~ 39138382 (-)
G79872 NA other upstream 881186 39396261 ~ 39456639 (-)

Expression


Co-expression Network