LOC120563036


Basic Information

Item Value
gene id LOC120563036
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38642548 ~ 38647914 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU106607
GCCCCGTCCTCCATCTCAGCAATCTGACTGCAAAGGATTCTGGGAACTACACCTGTGGTTTGAAGAGGAACAACGGCACCCTCTCCGCCCCATACAGCCTGCACTTGGGAGCAGAAGAGGAAGGAACTAAAGCCTTTGacccactgctggctgttcatCTGCTTCTCTTCACTCTGCACACTGTTTTCATCGTCATAGTAACGGCCATCATGATCAAAAGGACAtgcatttgcaaaaaaaaggtgacagtgTAGAACCCTGGAGCGTTTGGTCTGATAGTCCGGTTGGTTTGGGCCGGTGTGAAAGCTTACTAAACTCTGGTCCGCTTAAAGACGGGGGTCTCGGTTCTCTTCCAACTAGAGTTCGGTTCACTTCAGCCTCCAGACTTCGTAGAGGAGCTGAGACGTCCAGAGGAACGAGGCCGGGCTGTCTGATATTATCATCTATAACATATCTGCTCTAATATTACATCACTTGACCTTTATCTCTGATATTATCATCTGTAACATATCTGCTCTAATATTACATCACTGGACCTTTATCTCTGATATTATCACCTGTAACATATTTGCTCTAATATTCATCACTGGTGCTTTTAATCTCTgttgttaaaggtcctatgacatgctgctttttggatgcttttatatagctCTCaatggttccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggttccctaatactgtatcttaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctctttcccgaaattcagcattggtgcagaattacagccactagagccaggaGCTTTTCTCAGAATGTGCCATTCATGTGTctgcagctttaaatgctattgaggaggagaggggggggggcaaggtggagggtgggggtgtggccttgaccagcttgcggccatggttgtaggtctatttcctcatgggcgggccaaattctttgGGCAGCTGTGggcggcgggcaaagcagagaaaggggaggtaaccccttccccttatgacctcataaggagaagactcctgattggcccatctgagctttcattttctcaaaggcagagcaggatacccagggctcggtttacacctatcaccatttctagccactgggggaccataggcaggctgggggaactcatattaatgttaaaaaaactcataaagtcaatttaatgccatgggacctttaagatgatTTACAGGACATCAAACATATATTGAGTCTGTATGTACGTGAATATTGTTGTTTACCGTCTACAatttttttgaaagtgcttATATATTCTTTAagaattttaaatgttctgatGAAATTATGAAGACAACACATTTGAGGAGCTTTAAAGATTTATCATTTCACTTTTGCATCCTTTTCTACATACTTTTACACCTTAATGACATGTATATGTATGATGTATATTCTACACATTAATTTCTACAATGTCATGAATATAATAATTTGATTATTATCTGATAGAACTATATTGATGATTCATTAATCAATTacttgtcaactattaaatcaaTTGCTGACTATATTTTAAGAATCGATTAaccagtttgagtcattttcgTAGATCAacttaatttgaaaaaatagaAATTTTGATTTGATTGGAAGAATATATTAACATACATAGACaccagggtttctgcag
>XR_005639902.1
CAATCTGACTGCAAAGGATTCTGGGAACTACACCTGTGGTTTGAAGAGGAACAACGGCACCCTCTCCGCCCCATACAGCCTGCACTTGGGAGCAGAAGAGGAAGGAACTAAAGCCTTTGacccactgctggctgttcatCTGCTTCTCTTCACTCTGCACACTGTTTTCATCGTCATAGTAACGGCCATCATGATCAAAAGGACAtgcatttgc

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU106607 True 1836 lncRNA 0.40 5 38642548 38647914
XR_005639902.1 False 214 lncRNA 0.50 3 38642567 38644006

Neighbor

gene id symbol gene type direction distance location
LOC120563014 NA coding upstream 50053 38581518 ~ 38592495 (+)
tg NA coding upstream 66980 38525204 ~ 38575568 (+)
si:dkey-7j14.6 NA coding upstream 214063 38403152 ~ 38428485 (+)
LOC120563007 NA coding upstream 351225 38287737 ~ 38291323 (+)
LOC120562479 LOC104959728,LOC104960595,LOC106675582 coding upstream 372480 38268277 ~ 38270068 (+)
plin6 NA coding downstream 236376 38884290 ~ 38903260 (+)
LOC120563021 NA coding downstream 347239 38995153 ~ 39009576 (+)
LOC120563022 NA coding downstream 372896 39020810 ~ 39030834 (+)
LOC120562489 NA coding downstream 617919 39265833 ~ 39278503 (+)
LOC120563011 syt11,LOC102778393 coding downstream 744034 39391948 ~ 39419673 (+)
LOC120563037 NA non-coding upstream 30679 38611259 ~ 38611869 (+)
G79568 NA non-coding upstream 86263 38556066 ~ 38556285 (+)
G79373 NA non-coding upstream 120731 38456643 ~ 38521817 (+)
G79374 NA non-coding upstream 182553 38405111 ~ 38459995 (+)
G79617 NA non-coding downstream 68474 38716388 ~ 38800638 (+)
G79623 NA non-coding downstream 148704 38796618 ~ 38797157 (+)
G79625 NA non-coding downstream 156659 38804573 ~ 38806484 (+)
G79628 NA non-coding downstream 204680 38852594 ~ 38853108 (+)
G79635 NA non-coding downstream 227013 38874927 ~ 38878002 (+)
cmtm6 NA other upstream 186989 38433974 ~ 38455559 (+)
G79351 NA other upstream 317928 38170054 ~ 38324620 (+)
LOC120562481 NA other upstream 336656 38301425 ~ 38305892 (+)
LOC120562476 NA other upstream 453785 38182150 ~ 38188763 (+)
nek11 nek11,LOC102796711 other upstream 496744 38056416 ~ 38145804 (+)
G79605 NA other downstream 18358 38666272 ~ 38673012 (+)
cpne4a cpne4,LOC107379031,LOC103372348,LOC102220834,LOC108412597 other downstream 28822 38676736 ~ 38780360 (+)
G79615 NA other downstream 43732 38691646 ~ 38711009 (+)
dcst2 NA other downstream 654125 39302039 ~ 39306087 (+)
LOC120563015 NA other downstream 664725 39312639 ~ 39346432 (+)

Expression


Co-expression Network