XLOC_004625


Basic Information

Item Value
gene id XLOC_004625
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17424431 ~ 17427380 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010911
CAGAAATGAGCCAAGTTCCAATATTTTATATCAGATTTCAAGTCAGTTATGTAGGTGTTCCGCTCCAACATTGTCGTTTCCTTTTATGAAACAAACTCTAATTGGCTTGCCACACAATAACTGAAAGGTACAACCTACGTTTATTTTAGTCCCACTTCTGAACACGGAGAAAATATCAGAATGCACGTAAGTTATGTACCCCTCTCACCAGTGCCTCGACTACCCTGCAGGAAATTACTGAAATGCTTACGCCAGCAGAAAAGCGTGTTCTGTTACGTTTGCTCAGATGTGGATTTTGCCCCAAGGACGAAACGGAGGTGGAAAGTTCTAGCTGCGTTTCAGACAGCAAATCCTTATTGTAGAGCGCCATCTGTCAGAATATTCTAGAATAAAGCTCGTATGCTACAAGACCAGTGGTGCCTAAACATTTTCGTAAGAAGGGCCTAAAACCAAACATCACTGAGAGCCGTGGCCGatgGTGCTTCCTATCCCTGGACAAATCCCCCTCCTCCTGAAGTGAGACAGTGAGAGATCCACTATGTAATGGAGAAGATCCATTAAAATCCACACCtcccccaatcctaaacccaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010911 True 591 lncRNA 0.44 3 17424431 17427380

Neighbor

gene id symbol gene type direction distance location
XLOC_004624 AL731788.1 coding upstream 78764 17345550 ~ 17345667 (+)
XLOC_004623 rnls coding upstream 101090 17201522 ~ 17323341 (+)
XLOC_004622 ankrd22 coding upstream 265796 17154655 ~ 17158635 (+)
XLOC_004621 acta2 coding upstream 307950 17100021 ~ 17116481 (+)
XLOC_004620 ch25h coding upstream 380557 17042754 ~ 17043874 (+)
XLOC_004626 atad1b coding downstream 9524 17436904 ~ 17456083 (+)
XLOC_004627 cyth3a coding downstream 77179 17504559 ~ 17562703 (+)
XLOC_004628 pms2 coding downstream 176148 17603528 ~ 17619524 (+)
XLOC_004629 rsph10b coding downstream 192687 17620067 ~ 17633727 (+)
XLOC_004630 CR932017.1 coding downstream 274245 17701625 ~ 17739456 (+)
XLOC_004618 dre-mir-107a non-coding upstream 463650 16960693 ~ 16960781 (+)
XLOC_004615 NA non-coding upstream 549728 16742395 ~ 16874703 (+)
XLOC_004614 NA non-coding upstream 839377 16583373 ~ 16585054 (+)
XLOC_004613 NA non-coding upstream 854387 16567854 ~ 16570044 (+)
XLOC_004634 BX005075.1 non-coding downstream 698278 18125658 ~ 18125774 (+)
XLOC_004635 NA non-coding downstream 782491 18209871 ~ 18228004 (+)
XLOC_004644 AL772266.2 non-coding downstream 1171470 18598850 ~ 18598964 (+)
XLOC_004648 NA non-coding downstream 1433898 18861278 ~ 18867975 (+)
XLOC_004660 NA non-coding downstream 1840379 19267759 ~ 19271156 (+)

Expression


Co-expression Network