G79872


Basic Information

Item Value
gene id G79872
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39396261 ~ 39456639 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU106993
AAACCTGTGGTGGCCATAAAGCCCCGCCTGCACCCCCACATCCCCCCTCACCCCGGCTACCCCGCCAGCACCAAACCGCCACATCACGCAGCTGTCGCACCTGCAGCCGCTCCCAACAGACGACCTCCCGCTCCTCCGATTCGACCCACAAACCCTTACAAGGTCGACTCCTCGCCGCTCTGACTGAACCAGCAGAGAAAAGTTTCTCCTGTTCGGCccgagaagaagaagaagaagaagatgatgaagatgaagatgaagatgactTTATTACCCAGTTTGCACTCAAGTCGTCGGATTTCTCACTTTAGTCCTTAATGATCTCACAGGAACTGTAAATACGTGCTAGTGCCTTGCTCCGCGATGATGTGGACTCTCGGAGATGATGTCACGTTAAAGCGTCTCGGTGTCAGCGATACAGCCTGCACCCCAACCCAACCCCTCTACCCCAGCcggggttcagtgccttgctcaaggaccCTGCGATCAAAGTTAAGACTAATAAGTAGCTCAAAAACAACGGTGGTCCGGGACACTCTGCGggactttgtctgtaaaaggtctggcgaggtcggtgactcgagtctgttcggtgtgtcccgtgtcccgtgtctgggggggggggccgtCGGCgtccattttggccgatttgacgcGTTCGGTCGGCCGCAGGGCAGCCGGGACTAACCGGCAAATGGggagcgggatgaggtgactagagtctctcagaatctgaggaaaatcttttaaaatgacctttgttgatctgaaatgaagacagattcaggaactgtatacacacacacagacacacacacagagacacacacacagacacacacagacagacacacacagacacacacacacacagacacacacacagagagacacacagagacagagacagacacagacacacacacacagacacacacacacagagacacacacagacacacacacacacacagacacacacagagacacacacacagacacacacacacagacacacacagacagacacacacagacacacacacacacggagacagacacagagacacacacacacacacacacacacagacacacacagacacacacagagagacacacagacacagacacagacacacacagacacacacagacacacacagacacagacacagacacagagacacacacacacacacacacagacacacacacacacacacacacagagacacacacacacacacacagagacagacacagacacacacacacacagagacacacaacacacacacacagagacacacacacagacac
>TU106996
AAACCTGTGGTGGCCATAAAGCCCCGCCTGCACCCCCACATCCCCCCTCACCCCGGCTACCCCGCCAGCACCAAACCGCCACATCACGCAGCTGTCGCACCTGCAGCCGCTCCCAACAGACGACCTCCCGCTCCTCCGATTCGACCCACAAACCCTTACAAGGTCGACTCCTCGCCGCTCTGACTGAACCAGCAGAGAAAAGTTTCTCCTGTTCGGCccgagaagaagaagaagaagaagatgatgaagatgaagatgaagatgactTTATTACCCAGTTTGCACTCAAGTCGTCGGATTTCTCACTTTAGTCCTTAATGATCTCACAGGAACTGTAAATACGTGCTAGTGCCTTGCTCCGCGATGATGTGGACTCTCGGAGATGATGTCACGTTAAAGCGTCTCGGTGTCAGCGATACAGCCTGCACCCCAACCCAACCCCTCTACCCCAGCcggggttcagtgccttgctcaaggaccCTGCGATCAAAGTTAAGACTAATAAGTAGCTCAAAAACAACGGTGGTCCGGGACACTCTGCGggactttgtctgtaaaaggtctggcgaggtcggtgactcgagtctgttcggtgtgtcccgtgtcccgtgtctgggggggggggccgtCGGCgtccattttggccgatttgacgcGTTCGGTCGGCCGCAGGGCAGCCGGGACTAACCGGCAAATGGggagcgggatgaggtgactagagtctctcagaatctgaggaaaatcttttaaaatgacctttgttgatctgaaatgaagacagattcaggaactgtatacacacacacagacacacacacagagacacacacacagacacacacagacagacacacacagacacacacacacacagacacacacacagagagacacacagagacagagacagacacagacacacacacacagacacacacacacagagacacacacagacacacacacacacacagacacacacagagagacacacacagagacacacacacagacacacacacagagacacacacacagacagagacacacacacaaagacacacacacacacacacacacacagagacacgagtcacacacacacacacacacagacacacacacagacac
>TU106997
AAACCTGTGGTGGCCATAAAGCCCCGCCTGCACCCCCACATCCCCCCTCACCCCGGCTACCCCGCCAGCACCAAACCGCCACATCACGCAGCTGTCGCACCTGCAGCCGCTCCCAACAGACGACCTCCCGCTCCTCCGATTCGACCCACAAACCCTTACAAGGTCGACTCCTCGCCGCTCTGACTGAACCAGCAGAGAAAAGTTTCTCCTGTTCGGCccgagaagaagaagaagaagaagatgatgaagatgaagatgaagatgactTTATTACCCAGTTTGCACTCAAGTCGTCGGATTTCTCACTTTAGTCCTTAATGATCTCACAGGAACTGTAAATACGTGCTAGTGCCTTGCTCCGCGATGATGTGGACTCTCGGAGATGATGTCACGTTAAAGCGTCTCGGTGTCAGCGATACAGCCTGCACCCCAACCCAACCCCTCTACCCCAGCcggggttcagtgccttgctcaaggaccCTGCGATCAAAGTTAAGACTAATAAGTAGCTCAAAAACAACGGTGGTCCGGGACACTCTGCGggactttgtctgtaaaaggtctggcgaggtcggtgactcgagtctgttcggtgtgtcccgtgtcccgtgtctgggggggggggccgtCGGCgtccattttggccgatttgacgcGTTCGGTCGGCCGCAGGGCAGCCGGGACTAACCGGCAAATGGggagcgggatgaggtgactagagtctctcagaatctgaggaaaatcttttaaaatgacctttgttgatctgaaatgaagacagattcaggaactgtatacacacacacagacacacacacagagacacacacacagacacacacagacagacacacacagacacacacacacacacagacacacacagagagacacacagacacagacacagacacacacagacacacacagacacacacacagacacacacagacacacacagacacagacagacacacagacacaca
>TU106999
AAACCTGTGGTGGCCATAAAGCCCCGCCTGCACCCCCACATCCCCCCTCACCCCGGCTACCCCGCCAGCACCAAACCGCCACATCACGCAGCTGTCGCACCTGCAGCCGCTCCCAACAGACGACCTCCCGCTCCTCCGATTCGACCCACAAACCCTTACAAGGTCGACTCCTCGCCGCTCTGACTGAACCAGCAGAGAAAAGTTTCTCCTGTTCGGCccgagaagaagaagaagaagaagatgatgaagatgaagatgaagatgactTTATTACCCAGTTTGCACTCAAGTCGTCGGATTTCTCACTTTAGTCCTTAATGATCTCACAGGAACTGTAAATACGTGCTAGTGCCTTGCTCCGCGATGATGTGGACTCTCGGAGATGATGTCACGTTAAAGCGTCTCGGTGTCAGCGATACAGCCTGCACCCCAACCCAACCCCTCTACCCCAGCcggggttcagtgccttgctcaaggaccCTGCGATCAAAGTTAAGACTAATAAGTAGCTCAAAAACAACGGTGGTCCGGGACACTCTGCGggactttgtctgtaaaaggtctggcgaggtcggtgactcgagtctgttcggtgtgtcccgtgtcccgtgtctgggggggggggccgtCGGCgtccattttggccgatttgacgcGTTCGGTCGGCCGCAGGGCAGCCGGGACTAACCGGCAAATGGggagcgggatgaggtgactagagtctctcagaatctgaggaaaatcttttaaaatgacctttgttgatctgaaatgaagacagattcaggaactgtatacacacacacagacacacacacagagacacacacacagacacacacagacagacacacacagacacacacacacacagacacacacacagagagacacacagagacagagacagacacagacacacacacacagacacacacacacagagacacacacagacacacacacacacacagacacacacagagacacacacacagacacacacacacagacacacacagacagacacacacagacacacacacacacggagacagacacagagacacacacacacacacacacacacagacacacacagacacacacagagagacacacagacacagacacagacacacacagacacacacagacacacacagacacagacacagacacagacacacacacacacacacacacacacacacacagaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106993 True 1323 TUCP 0.53 4 39433424 39456639
TU106996 False 1131 lncRNA 0.53 3 39434167 39456639
TU106997 False 987 TUCP 0.54 4 39396261 39456639
TU106999 False 1221 lncRNA 0.53 3 39453440 39456639

Neighbor

gene id symbol gene type direction distance location
LOC120562487 NA coding downstream 253556 39107304 ~ 39142705 (-)
trim33l NA coding downstream 451086 38908049 ~ 38945175 (-)
LOC120563017 NA coding downstream 896604 38489974 ~ 38499657 (-)
LOC120562484 NA coding downstream 911396 38482155 ~ 38484865 (-)
LOC120563005 NA coding downstream 921701 38472146 ~ 38474560 (-)
LOC120562358 LOC101076950 coding upstream 376514 39833153 ~ 39843176 (-)
LOC120562356 ttc24 coding upstream 445126 39901765 ~ 39923149 (-)
LOC120562362 NA coding upstream 668786 40125425 ~ 40175116 (-)
LOC120562374 NA coding upstream 723703 40180342 ~ 40201133 (-)
LOC120562375 NA coding upstream 788746 40245385 ~ 40252154 (-)
G79868 NA non-coding downstream 14618 39380288 ~ 39381643 (-)
G79857 NA non-coding downstream 45608 39323277 ~ 39350653 (-)
G79847 NA non-coding downstream 49831 39279243 ~ 39346430 (-)
G79807 NA non-coding downstream 69398 39038454 ~ 39326863 (-)
G79854 NA non-coding downstream 77019 39318259 ~ 39319242 (-)
G79884 NA non-coding upstream 20007 39476646 ~ 39477473 (-)
G79886 NA non-coding upstream 30307 39486946 ~ 39487775 (-)
G79892 LOC106585230,LOC106577920 non-coding upstream 40511 39497150 ~ 39497602 (-)
G79894 NA non-coding upstream 42760 39499399 ~ 39500584 (-)
G79896 NA non-coding upstream 45361 39502000 ~ 39502210 (-)
G79820 NA other downstream 257879 39097772 ~ 39138382 (-)
G79767 NA other downstream 488240 38906780 ~ 38908021 (-)
nudt17 nudt17 other downstream 715781 38666267 ~ 38680480 (-)
LOC120562485 NA other downstream 873872 38516601 ~ 38522389 (-)
LOC120562482 NA other downstream 1071977 38318944 ~ 38324284 (-)
G80027 NA other upstream 120024 39576663 ~ 39577939 (-)
G80046 NA other upstream 322745 39779384 ~ 39861548 (-)
LOC120562372 NA other upstream 746400 40203039 ~ 40234663 (-)
G80129 NA other upstream 765728 40222367 ~ 40307523 (-)
G80186 NA other upstream 1035684 40492323 ~ 40497596 (-)

Expression


Co-expression Network