G80008 (tmem79,LOC103369887,LOC102205740,LOC102794394,LOC101478387)


Basic Information

Item Value
gene id G80008
gene name tmem79,LOC103369887,LOC102205740,LOC102794394,LOC101478387
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40356168 ~ 40399888 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU107215
CGTCCGAAGGCGAAGACCACGGTCAGCAGCGGGACAAGCTTCAGCTGGTGCTGGCTCAGGTACATCGCCATGACGACCAGCTGCAGGAAGTAGATCAGGAACAAGGAGGCGGAGTCAGAGACAAAGCGCCGGTGGACAGAGACCTCCTGAGGCTCCGCCTCCTTCAACTCGTCATCAAACCGAGGACCAATCCCAGAGGACCTGAGTCGACTGGCGCCGAGCACCAGCCAacctgagagagacagacaggttagagagacagacagacagggagacaggcaggttagagagacaggcatgttagagagacagacaggttagagagacagacagacagacagacagacagacagacagacagacagacaggtgtccTACCCAGTACTATGGGGATGGTGGCGAACACGGAGCAGCGCAGCACGTAGACGAGTCGCAGCGCGGCGCCGTCCATCAGCGGGGCGTCGAACGGCAGGAACACAAACCCCCCCCACACCAGCAGGGGGAAGAAcagcagtgatgtcatcagggaCACTCGTACTGGCAGCCATGTTGGTTGTAGTCCTGTGGTTCTCCTCGGGGGCCCAGGAAGGGTCTCTTCTCAGActccatttcccagaatgcctcaGTGTCTCTGGATGAGTTGGGGCAGTGGAGGACAGCGACTGATGGACTGAACACCTGCGCTGCGTGCTCCGGCAGCTCGTTCTCTGCAGGCTCCGCCTCCAGCGCTGTCCTAAGCTCCGCCCCCAGAGGCATCCTAAGCCCCACCCCTTCTCTCTGACTCTCAGGCTCCTCCTCCAGCGGCGtcctaagccccgccccctctaACTGACTCTCTGTCCAGCTCGCCGCTGACCTCACACTGCGCCGGTCACCTTTACCTGTctgtccacctgtctgtctgtctctgggcTCCTCCCACTCGTCTTCTCCGTCCATCTGGTTCACCTTCACCCCCCCGCTGTCCTCCATCTTGGTACTTCCTGTCAGACACTGGCCGTCTGTCAGCAGagacatgtctgtctgtctgtctgtctgtctgtgtctctgtctgtgtgtgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
tmem79 Enables identical protein binding activity. Predicted to be involved in several processes, including epithelial cell maturation; establishment of skin barrier; and positive regulation of epidermis development. Predicted to act upstream of or within cornification; cuticle development; and hair follicle morphogenesis. Predicted to be located in cytoplasm. Predicted to be active in lysosomal membrane and trans-Golgi network membrane.

NR:

description
PREDICTED: transmembrane protein 79-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107215 True 1259 lncRNA 0.58 6 40356168 40399888

Neighbor

gene id symbol gene type direction distance location
LOC120562376 LOC103369584 coding upstream 66567 40268948 ~ 40289601 (+)
LOC120562377 NA coding upstream 74416 40278196 ~ 40281752 (+)
LOC120562363 NA coding upstream 204083 40139733 ~ 40152085 (+)
si:dkey-15h8.17 NA coding upstream 242345 40111433 ~ 40113823 (+)
LOC120562361 LOC103369586 coding upstream 262908 40083030 ~ 40093260 (+)
LOC120562382 LOC104937304,LOC103131143,LOC103374405,LOC102237830,LOC100708478,LOC102793710,LOC102303267 coding downstream 51400 40451288 ~ 40477146 (+)
decr1 decr1 coding downstream 87715 40487603 ~ 40507973 (+)
LOC120562386 NA coding downstream 110162 40510050 ~ 40549415 (+)
LOC120562500 NA coding downstream 255624 40655512 ~ 40660314 (+)
LOC120562405 NA coding downstream 430624 40830512 ~ 40837078 (+)
LOC120562379 NA non-coding upstream 8796 40346447 ~ 40347372 (+)
G80005 NA non-coding upstream 24981 40329188 ~ 40331187 (+)
G80004 NA non-coding upstream 38543 40316038 ~ 40317625 (+)
G80002 NA non-coding upstream 39577 40315432 ~ 40316591 (+)
G79998 NA non-coding upstream 76156 40279686 ~ 40280012 (+)
G80019 NA non-coding downstream 44497 40444385 ~ 40444717 (+)
G80015 NA non-coding downstream 54559 40454447 ~ 40456102 (+)
G80021 NA non-coding downstream 81923 40481811 ~ 40485057 (+)
G80024 NA non-coding downstream 93086 40492974 ~ 40494187 (+)
G80200 NA non-coding downstream 212278 40612166 ~ 40612567 (+)
LOC120562498 LOC103369894 other upstream 11108 40290982 ~ 40345060 (+)
G80003 NA other upstream 35101 40316739 ~ 40321067 (+)
LOC120562364 LOC108234077 other upstream 584748 39765173 ~ 39771420 (+)
G79722 LOC100712425 other upstream 892327 39460448 ~ 39463841 (+)
G79713 NA other upstream 901876 39433461 ~ 39454292 (+)
LOC120562387 NA other downstream 245771 40645659 ~ 40656567 (+)
LOC120562400 NA other downstream 608079 41007967 ~ 41012619 (+)
polr3glb NA other downstream 756586 41156474 ~ 41186945 (+)
G80320 NA other downstream 956592 41356480 ~ 41360206 (+)
LOC120562389 NA other downstream 977559 41377447 ~ 41393226 (+)

Expression


Co-expression Network