LOC120562499 (LOC103374404)


Basic Information

Item Value
gene id LOC120562499
gene name LOC103374404
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40378682 ~ 40441316 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU107235
gtgtgtaatactgtgttgtgtgtgtaatactgtgttgtgtgtgtaatactgtgttgtgtgtgtaatactgtgttgtgtgtgtaatactacgctgtgtgtgtaatactgtgttgtgtgtgtaatactgtgttgtgtgtgtaatactacgctgtgtgtgtaatactgtgttgtgtgtgtaatactacgctgtgtgtgtaatactgtgttgtgtgtgtaatactacgctgtgtgtgtaatactgtgttgtgtgtgtaatactAGCTGACATCCAGCAGAAGGACCGGGAGGTTCTGGAGCTCCTGCAGGAGCGCGTCACGCTGTTCTCAGACCTGGTGGAGGCcacagggagaggaggaggagatggaggagaagaagaagaagaagaagaagaagaaggaggaggaggaggagga
>TU107236
tgtgtgtgtaatactgtgttgtgtgtgtaatactgtgttgtgtgtgtaatactgtgttgtgtgtgtaatactgtgttgtgtgtgtaatactgtgttgtgtgtgtaatactacgctgtgtgtgtaatactgtgttgtgtgtgtaatactgtgttgtgtgtgtaatactacgctgtgtgtgtaatactgtgttgtgtgtgtaatactacgctgtgtgtgtaatactgtgttgtgtgtgtaatactacgctgtgtgtgtaatactgtgttgtgtgtgtaatactAGCTGACATCCAGCAGAAGGACCGGGAGGTTCTGGAGCTCCTGCAGGAGCGCGTCACGCTGTTCTCAGACCTGGTGGAGGCcacagggagaggaggaggagatggaggagaagaagaagaagaagaagaagaagaaggaggaggaggaggagga
>TU107237
aatactgtgttgtgtgtgtaatactacgctgtgtgtgtaatactgtgttgtgtgtgtaatactgtgttgtgtgtgtaatactacgctgtgtgtgtaatactgtgttgtgtgtgtaatactacgctgtgtgtgtaatactgtgttgtgtgtgtaatactacgctgtgtgtgtaatactgtgttgtgtgtgtaatactAGCTGACATCCAGCAGAAGGACCGGGAGGTTCTGGAGCTCCTGCAGGAGCGCGTCACGCTGTTCTCAGACCTGGTGGAGGCcacagggagaggaggaggagatggaggagaagaagaagaagaagaagaagaagaaggaggaggaggaggagga
>TU107239
CAGCAGGAAGTGACACGGCTGCAACTGAGGGGGGAGGAGCCAATCAGAGAGGGGGCGGAGCCCGTAAAAAGGAGGAGGGGCAACGGAGAGCTCAGTGATGTCATCAAGGGAGAACAGcaggtGAACAGGAGGCGAGGCAGCAGGGAGTTGGAGTCCCGCCCCCTCGCTCCATTGGCCAGTCAAGATCCCGTCGACCAATTAGACGGTGTCCAGGAAGgaaatgaggaagaggaagtgacTAGGATCTCTCCTCGCTCCGACAGTCCCAGAGACCTGCAGGACATCCCAGAGGAGAGTGAGTGTGGAGCGGATCCCAGTTAACCAATCAGGAAGTAGAACCATCACGTCAGCTGGAGCCCCGCCCACATCGCtggagggggcggggcttatggaCTCACCacactacattacccacaatgcctTTGGATATCAACAGATAAACTGTATTTAAAGTAGTTTAATGAAAACATTTCAGAggtttttaatttgtgtttctgtcttttgtgaaaccaaaaaaaaaaacattttttaaattcaggAACAAAGTTTGTCAGGAAGTGAGAAACGCTGCGTTCACGTGTTCCTGATCTAAAGTCCGAAAGAACGCAGCGAAATATTGCGTTTACTGAAATGTGACTCAGCTTTTAAAGTTTAGTGTCGATGAATAATATACTCCATGTTGTTGgtgtttttaaagaaacaggAAGCAGTTTGCTGTCTGCTCCTGTCTGTTAGCATGATAGCGTGTTAGCATGATAGCATGATAGCATCTTAGTATGTTAACATGTTAGCATATTAGAATGTTAGCATCTTAGCATCTTAGTATGTTAATATGTTAGCATATTAGTATGTTAGCGTGTTAGCGCGTTATTATGTTAGCGTGatagcatgttagcatattaGGATGTTAGCGTGATAGCATGTTTGCATATTATCATGTTAGCATGATAGCATGTTAGAGTGATAGCATGTTAGCGTGGCTGTAAACCTGATGGTCTGCAGAGCAGAACTTTATTGATGTTTAAATCACTTTGTTTGCTGCAGATTTTCCAAATATTTCATGTCAGATTTTTACCgtgttgccatggaaacagaTGTTTATTACTCTGCTCTCTGGGAGTTTATTGCTGAGTTTAAATGAAGAAGAAGTCTCATTAAAACGACAGCtgtttaaatataaaacactGAAAGTTTATCTGAATATTAATCTCTTAATAAGAAGCCAAATTGtgttatttacacatttatattcCATCgtgttaaaatctcttttttacTCCGATCCTGAAACGGGATCAGCTGTTTTTATATCATGTGGTCCTTCGACCCGCggctgggttagggttaggggacgTCCAACATCTGGGACCTTAAAGTTTAACATCTGGAATccagtttttttatatcagaaatatgtcgaaaaataaataaaaattttttgGAACCAACGATGTGAAACATCTGAAAATGTTccactccaggctgtaggtggagccagaggagctggatttattctaaatgacctgcttcatgtagttctactggaacataggctCAGTTTCAgctaatatgacagaaaggtagttttataagacttacctactgcatctttaacgtTTCATATCTGGAACCAACGATGtgaaaaatctgaaaatgtgtagaaagGAACAACAGAAGTGTTGTCGTAGTATTAGTCGACAGGAAGAGAAAGTTTAACATGATGACCCAGTTCCCAGATGCTCCCAGATGTTCCCAGATGCTCCAGACTCTAAACTGATCCGGAGTCAGCAGCGTCGTATCATAACGTAGTTTAGAAGACGGTGAACTGAAGTCGTGTCTGTATAAAGATTTGATCAGAAACTGTAAATGATTCTCGTTGTaagtttattgtttttgtgtctcgTTATAAATCTAATCAGCTGGA
>TU107240
CAGCAGGAAGTGACACGGCTGCAACTGAGGGGGGAGGAGCCAATCAGAGAGGGGGCGGAGCCCGTAAAAAGGAGGAGGGGCAACGGAGAGCTCAGTGATGTCATCAAGGGAGAACAGgtGAACAGGAGGCGAGGCAGCAGGGAGTTGGAGTCCCGCCCCCTCGCTCCATTGGCCAGTCAAGATCCCGTCGACCAATTAGACGGTGTCCAGGAAGgaaatgaggaagaggaagtgacTAGGATCTCTCCTCGCTCCGACAGTCCCAGAGACCTGCAGGACATCCCAGAGGAGAGTGAGTGTGGAGCGGATCCCAGTTAACCAATCAGGAAGTAGAACCATCACGTCAGCTGGAGCCCCGCCCACATCGCtggagggggcggggcttatggaCTCACCacactacattacccacaatgcctTTGGATATCAACAGATAAACTGTATTTAAAGTAGTTTAATGAAAACATTTCAGAggtttttaatttgtgtttctgtcttttgtgaaaccaaaaaaaaaaacattttttaaattcaggAACAAAGTTTGTCAGGAAGTGAGAAACGCTGCGTTCACGTGTTCCTGATCTAAAGTCCGAAAGAACGCAGCGAAATATTGCGTTTACTGAAATGTGACTCAGCTTTTAAAGTTTAGTGTCGATGAATAATATACTCCATGTTGTTGgtgtttttaaagaaacaggAAGCAGTTTGCTGTCTGCTCCTGTCTGTTAGCATGATAGCGTGTTAGCATGATAGCATGATAGCATCTTAGTATGTTAACATGTTAGCATATTAGAATGTTAGCATCTTAGCATCTTAGTATGTTAATATGTTAGCATATTAGTATGTTAGCGTGTTAGCGCGTTATTATGTTAGCGTGatagcatgttagcatattaGGATGTTAGCGTGATAGCATGTTTGCATATTATCATGTTAGCATGATAGCATGTTAGAGTGATAGCATGTTAGCGTGGCTGTAAACCTGATGGTCTGCAGAGCAGAACTTTATTGATGTTTAAATCACTTTGTTTGCTGCAGATTTTCCAAATATTTCATGTCAGATTTTTACCgtgttgccatggaaacagaTGTTTATTACTCTGCTCTCTGGGAGTTTATTGCTGAGTTTAAATGAAGAAGAAGTCTCATTAAAACGACAGCtgtttaaatataaaacactGAAAGTTTATCTGAATATTAATCTCTTAATAAGAAGCCAAATTGtgttatttacacatttatattcCATCgtgttaaaatctcttttttacTCCGATCCTGAAACGGGATCAGCTGTTTTTATATCATGTGGTCCTTCGACCCGCggctgggttagggttaggggacgTCCAACATCTGGGACCTTAAAGTTTAACATCTGGAATccagtttttttatatcagaaatatgtcgaaaaataaataaaaattttttgGAACCAACGATGTGAAACATCTGAAAATGTTccactccaggctgtaggtggagccagaggagctggatttattctaaatgacctgcttcatgtagttctactggaacataggctCAGTTTCAgctaatatgacagaaaggtagttttataagacttacctactgcatctttaacgtTTCATATCTGGAACCAACGATGtgaaaaatctgaaaatgtgtagaaagGAACAACAGAAGTGTTGTCGTAGTATTAGTCGACAGGAAGAGAAAGTTTAACATGATGACCCAGTTCCCAGATGCTCCCAGATGTTCCCAGATGCTCCAGACTCTAAACTGATCCGGAGTCAGCAGCGTCGTATCATAACGTAGTTTAGAAGACGGTGAACTGAAGTCGTGTCTGTATAAAGATTTGATCAGAAACTGTAAATGATTCTCGTTGTaagtttattgtttttgtgtctcgTTATAAATCTAATCAGCTGGA
>XM_039806208.1
CCCCGCCCCCCCGGCACACACTGCGCACAGCTCCGAGATCGGAACCCCCGGAACCCCGAGAACCGTACCCATCCGGGCCACTGCGGACTAACTATCGATCCGAGCCGATCCGAGCCGAGCCACGGAGATTCGGAAGCGCTCGGTCCGTCGGAgggaatgtcccggctgctggAGAGCAGGAGACAGGACAGGATGAAGGAAATCAACCTCAAGAATAAGGAGAAGGTGCGTCTGAAGGAGCGGGAGAAGGaggcgagagagcgagaggctCGCCATAGCAACGGTCACCTGTTCACGTCTCTGACGGTGTCATCGACCACGCTGTGTTCCTCCTGCAACCGCAGCATCACGGCCAAGGAGGCGCTCAGCTGCCCAGcCTGTAATGTCACCATCCATAACCGCTGCAGAGACAGTCTGGCCAGCTGTGCCAAGATGAAACAAAGGCAACAGAAGTTGGCTATTGTCAGGAACAGTTCAGCTCTGCAGAACGTCGCCATGAGAACTAAAActccGATGATGAAGGAGCGCCCCAGCTCGGCCATCTATCCGTCCGACAGCCTGCGCCAGTCTCTGCTCGGCTCGCGCCGCGTTCGCTCCGGCCTCTCGCTCGCCAAGAGCGTCTCCACCAATAACATCGCAGGgatGAGTGAGGACTCTGTGGGTCTAAGGAGGATTCTGTCCCAGTCCACTGAGTCTCTGAACTTCAGGAGCAGAACCTTGTCCATGGAGTCTCTGACGGACGACGgtgAGTGGTGGTGGACCCCCCTGCTAGAGGACCTGCAGGTAGAGGGGAGCTGTGTCCAGGCTGACAGCTGGAGTCTGGTGGTGGAGCCGAGCTTCCTGCAGACGCTTCACAAAGACCTCATCAAGAAACAGGACGTCATCtacgaGCTGATCCAGACAGAGTTCCACCACGTGCGTACGCTGCGTATCATGGAAGGTGTGTACCGGCGAGGGATGCTGGAGGAAGTGATGCTGGAGGCGGCCGTGGTCCACACCATCTTCCCCTGTCTGGACCAGCTGCTCGAGTGGCACACCACCTTCCTGGCTCACCTGTTCAACCTGCGCAGGGAGGGGCTAACGGAGGGCAGCGATACCAACTTCACCATCCGCAGCATCGGACACCTGCTGctcacacagttttcaGGGCAGTGTGCAGAGGACATGAAGAAACTTTATTCTGAGTTCTGCAGTCGACACCCGAAAGCTGTGAAACTTTACAAAGAAGTTTTAAGTCGAGACCGACGACTGCAGCAGTTTGTCAGACGTGCCTGTCGGGGTCCTCTGCTGCGTCGTCATGGTGTCCAGGAGTGCATCCTGCTGGTGACACAGCGACTCACAAAGTACCCCGTCCTCATCCAACGAATCCTCGACAACACCAAAGGCAGCGAAGAGGAGGCGCAGGCTCTGAGCCGAGCGCTGGTCCTCCTGAAGGGGCTGATCAGCTCGGTGGACCAGGAGGTCCTGGAGCTGGACCGGACCAGGAGGCTGCAGGAGATCCAGGCCCGGCTGGACCCGCGGGCCCAGGCCCAGGTCCAGGGAGGGGGGGTCTTCAGGGGGGGCGAACTGCTGAGGAGGAGACTCCTCCACGAGGGAACGCTGCTGCTGAAACTACAGGGGTCCAGGATGAAAGATGTGCAGGTCCTGCTGATGTCAGACATCTTGGTTTTCCTTCAGGAGAAAGATCAGAAGTTCACTTTCCCTTCACTGgaCAAGTCTCCCGTGGTGTCCCTGAACAACCTGATCGTCAGAGACATAGCCAATCAGGAGCGAGGGATGTACCTGATCTCGGCCTCCACGCCTCCAGAGATGTACGAGCTGCACGTTTCCTCCAAAGACGACCGGCGCACCTGGATGAGCCGCATCCAGCAAGCTGCGCTCagatactgtgttgtgtgtgtaatactAGCTGACATCCAGCAGAAGGACCGGGAGGTTCTGGAGCTCCTGCAGGAGCGCGTCACGCTGTTCTCAGACCTGGTGGAGGCcacagggagaggaggaggagatggaggagaagaagaagaagaagaagaagaagaaggaggaggaggaggaggaggagatatcactCAGGtggATAAACTGAGCGAGCTGCTGCTGAACTCCAACGTCCAGAAATCCTCCAACGGAAACCCCGAGATCAGCAacgGTGACTCTGGTTCTCTGAATGGCTCTTTTGAGTCGACCGGCTCCTCGAAGgACAGAAACGGCAACCAGCTGCAGGAACGGACCTTAAACCAGGAAGTGCGTCAGCGGTTGGTCAGTCTGAGCACGCAGCTTCACGCCCTGCAGGCGGCTGTGATTCGTCAGGATTCCATCCTGGAGCTGTCATTCAGAGCAGGCCCCGCCCCCACGGCCTCCGAAGGCCCCGCCCCCCGCCTCAGCCGCTCACTGTCGCGGGATGCGGGGATGGACGCCAACGGCGAGGCGCTGCTGCTGCGACGGCAGGTGGAGATGCTGCAGCAGGAAGTGACACGGCTGCAACTGAGGGGGGAGGAGCCAATCAGAGAGGGGGCGGAGCCCGTAAAAAGGAGGAGGGGCAACGGAGAGCTCAGTGATGTCATCAAGGGAGAACAGcaggtGAACAGGAGGCGAGGCAGCAGGGAGTTGGAGTCCCGCCCCCTCGCTCCATTGGCCAGTCAAGATCCCGTCGACCAATTAGACGGTGTCCAGGAAGgaaatgaggaagaggaagtgacTAGGATCTCTCCTCGCTCCGACAGTCCCAGAGACCTGCAGGACATCCCAGAGGAGAGTGAGTGTGGAGCGGATCCCAGTTAACCAATCAGGAAGTAGAACCATCACGTCAGCTGGAGCCCCGCCCACATCGCtggagggggcggggcttatggaCTCACCacactacattacccacaatgcctTTGGATATCAACAGATAAACTGTATTTAAAGTAGTTTAATGAAAACATTTCAGAggtttttaatttgtgtttctgtcttttgtgaaaccaaaaaaaaaaacattttttaaattcaggAACAAAGTTTGTCAGGAAGTGAGAAACGCTGCGTTCACGTGTTCCTGATCTAAAGTCCGAAAGAACGCAGCGAAATATTGCGTTTACTGAAATGTGACTCAGCTTTTAAAGTTTAGTGTCGATGAATAATATACTCCATGTTGTTGgtgtttttaaagaaacaggAAGCAGTTTGCTGTCTGCTCCTGTCTGTTAGCATGATAGCGTGTTAGCATGATAGCATGATAGCATCTTAGTATGTTAACATGTTAGCATATTAGAATGTTAGCATCTTAGCATCTTAGTATGTTAATATGTTAGCATATTAGTATGTTAGCGTGTTAGCGCGTTATTATGTTAGCGTGatagcatgttagcatattaGGATGTTAGCGTGATAGCATGTTTGCATATTATCATGTTAGCATGATAGCATGTTAGAGTGATAGCATGTTAGCGTGGCTGTAAACCTGATGGTCTGCAGAGCAGAACTTTATTGATGTTTAAATCACTTTGTTTGCTGCAGATTTTCCAAATATTTCATGTCAGATTTTTACCgtgttgccatggaaacagaTGTTTATTACTCTGCTCTCTGGGAGTTTATTGCTGAGTTTAAATGAAGAAGAAGTCTCATTAAAACGACAGCtgtttaaatataaaacactGAAAGTTTATCTGAATATTAATCTCTTAATAAGAAGCCAAATTGtgttatttacacatttatattcCATCgtgttaaaatctcttttttacTCCGATCCTGAAACGGGATCAGCTGTTTTTATATCATGTGGTCCTTCGACCCGCggctgggttagggttaggggacgTCCAACATCTGGGACCTTAAAGTTTAACATCTGGAATccagtttttttatatcagaaatatgtcgaaaaataaataaaaattttttgGAACCAACGATGTGAAACATCTGAAAATGTTccactccaggctgtaggtggagccagaggagctggatttattctaaatgacctgcttcatgtagttctactggaacataggctCAGTTTCAgctaatatgacagaaaggtagttttataagacttacctactgcatctttaacgtTTCATATCTGGAACCAACGATGtgaaaaatctgaaaatgtgtagaaagGAACAACAGAAGTGTTGTCGTAGTATTAGTCGACAGGAAGAGAAAGTTTAACATGATGACCCAGTTCCCAGATGCTCCCAGATGTTCCCAGATGCTCCAGACTCTAAACTGATCCGGAGTCAGCAGCGTCGTATCATAACGTAGTTTAGAAGACGGTGAACTGAAGTCGTGTCTGTATAAAGATTTGATCAGAAACTGTAAATGATTCTCGTTGTaagtttattgtttttgtgtctcgTTATAAATCTAATCAGCTGGAACAGA

Function

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107235 False 413 TUCP 0.46 2 40419979 40420429
TU107236 False 435 TUCP 0.45 2 40417078 40420429
TU107237 False 350 TUCP 0.47 2 40419869 40420429
TU107239 False 1924 lncRNA 0.41 3 40434293 40441311
TU107240 False 1921 lncRNA 0.41 3 40434293 40441311
XM_039806208.1 True 4392 mRNA 0.51 22 40378682 40441316

Neighbor

gene id symbol gene type direction distance location
LOC120562376 LOC103369584 coding upstream 89081 40268948 ~ 40289601 (+)
LOC120562377 NA coding upstream 96930 40278196 ~ 40281752 (+)
LOC120562363 NA coding upstream 226597 40139733 ~ 40152085 (+)
si:dkey-15h8.17 NA coding upstream 264859 40111433 ~ 40113823 (+)
LOC120562361 LOC103369586 coding upstream 285422 40083030 ~ 40093260 (+)
LOC120562382 LOC104937304,LOC103131143,LOC103374405,LOC102237830,LOC100708478,LOC102793710,LOC102303267 coding downstream 9972 40451288 ~ 40477146 (+)
decr1 decr1 coding downstream 46287 40487603 ~ 40507973 (+)
LOC120562386 NA coding downstream 68734 40510050 ~ 40549415 (+)
LOC120562500 NA coding downstream 214196 40655512 ~ 40660314 (+)
LOC120562405 NA coding downstream 389196 40830512 ~ 40837078 (+)
G79985 NA non-coding upstream 818 40222582 ~ 40377864 (+)
LOC120562379 NA non-coding upstream 31310 40346447 ~ 40347372 (+)
G80005 NA non-coding upstream 47495 40329188 ~ 40331187 (+)
G80004 NA non-coding upstream 61057 40316038 ~ 40317625 (+)
G80002 NA non-coding upstream 62091 40315432 ~ 40316591 (+)
G80019 NA non-coding downstream 3069 40444385 ~ 40444717 (+)
G80015 NA non-coding downstream 13131 40454447 ~ 40456102 (+)
G80021 NA non-coding downstream 40495 40481811 ~ 40485057 (+)
G80024 NA non-coding downstream 51658 40492974 ~ 40494187 (+)
G80200 NA non-coding downstream 170850 40612166 ~ 40612567 (+)
LOC120562498 LOC103369894 other upstream 33622 40290982 ~ 40345060 (+)
G80003 NA other upstream 57615 40316739 ~ 40321067 (+)
LOC120562364 LOC108234077 other upstream 607262 39765173 ~ 39771420 (+)
G79722 LOC100712425 other upstream 914841 39460448 ~ 39463841 (+)
G79713 NA other upstream 924390 39433461 ~ 39454292 (+)
LOC120562387 NA other downstream 204343 40645659 ~ 40656567 (+)
LOC120562400 NA other downstream 566651 41007967 ~ 41012619 (+)
polr3glb NA other downstream 715158 41156474 ~ 41186945 (+)
G80320 NA other downstream 915164 41356480 ~ 41360206 (+)
LOC120562389 NA other downstream 936131 41377447 ~ 41393226 (+)

Expression


Co-expression Network