LOC120562415


Basic Information

Item Value
gene id LOC120562415
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40678343 ~ 40765467 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU107582
TGGAGGAGTTCTCAGacttttctatctctctctcctgtcattcAGGTAtctctcctgctgctgactctagaactcatctctctcctgtcattcagCTATATAGGACACTGGGACAAAGGCAGCAGACATCAACCCAACTGAGCTCACAGAGAGGGACATCACCATCCAAGGAGGGCTACATCCTCTTACAAGGTGAGGATGACATCCACGGCAGATCGACTGGCCCGTCAGCAGGGCAGGGAACAAGGCATTGGCACAAACAAGAAAGCAGTGAAGTTCCTGCAGCAGGATTATGAGACTCTGCGCCAGCTGTGTTTGAAGAGTGGACTCCTGTTTGAGGACAAGTGCTTCCCAGCTGAGCCCACATCACTGGGCCACAAGGATCTGGGACCAGGCTCAGAAGAAACCAAGGGGGTTGTTTGGAAAAGGCCAACGGAGCTGTGCCCAAACCCAAAGTTCATTGTTGATGGAGCCACAAGGACGGACATTTGCCAAGGAGAGCTGGGGGACTGCTGGCTTCTGGCTGCAATAGCCAGTCTGACTCTAGACCAGCAGATCCTGGCTCGCGTGGTGCCCCAGGAACAGAGTTTTACTGAAGGTTACGCCGGGATATTTCACTTCCAGATCTGGCAGTTTGGTGAGTGGGTTGATGTGGTGATCGATGACCGTTTAC
>TU107584
TTCAGGTAtctctcctgctgctgactctagaactcatctctctcctgtcattcagCTATATAGGACACTGGGACAAAGGCAGCAGACATCAACCCAACTGAGCTCACAGAGAGGGACATCACCATCCAAGGAGGGCTACATCCTCTTACAAGGTGAGGATGACATCCACGGCAGATCGACTGGCCCGTCAGCAGGGCAGGGAACAAGGCATTGGCACAAACAAGAAAGCAGTGAAGTTCCTGCAGCAGGATTATGAGACTCTGCGCCAGCTGTGTTTGAAGAGTGGACTCCTGTTTGAGGACAAGTGCTTCCCAGCTGAGCCCACATCACTGGGCCACAAGGATCTGGGACCAGGCTCAGAAGAAACCAAGGGGGTTGTTTGGAAAAGGCCAACGGAGCTGTGCCCAAACCCAAAGTTCATTGTTGATGGAGCCACAAGGACGGACATTTGCCAAGGAGAGCTGGGGGACTGCTGGCTTCTGGCTGCAATAGCCAGTCTGACTCTAGACCAGCAGATCCTGGCTCGCGTGGTGCCCCAGGAACAGAGTTTTACTGAAGGTTACGCCGGGATATTTCACTTCCAGATCTGGCAGTTTGGTGAGTGGGTTGATGTGGTGATCGATGACCGTTTAC
>TU107585
CTCAGacttttctatctctctctcctgtcattcagGTAtctctcctgctgctgactctagaactcatctctctcctgtcattcagGTAtctctcctgctgctgactctagaactcatctctctcctgtcattcagCTATATAGGACACTGGGACAAAGGCAGCAGACATCAACCCAACTGAGCTCACAGAGAGGGACATCACCATCCAAGGAGGGCTACATCCTCTTACAAGGTGAGGATGACATCCACGGCAGATCGACTGGCCCGTCAGCAGGGCAGGGAACAAGGCATTGGCACAAACAAGAAAGCAGTGAAGTTCCTGCAGCAGGATTATGAGACTCTGCGCCAGCTGTGTTTGAAGAGTGGACTCCTGTTTGAGGACAAGTGCTTCCCAGCTGAGCCCACATCACTGGGCCACAAGGATCTGGGACCAGGCTCAGAAGAAACCAAGGGGGTTGTTTGGAAAAGGCCAACGGAGCTGTGCCCAAACCCAAAGTTCATTGTTGATGGAGCCACAAGGACGGACATTTGCCAAGGAGAGCTGGGGGACTGCTGGCTTCTGGCTGCAATAGCCAGTCTGACTCTAGACCAGCAGATCCTGGCTCGCGTGGTGCCCCAGGAACAGAGTTTTACTGAAGGTTACGCCGGGATATTTCACTTCCAGATCTGGCAGTTTGGTGAGTGGGTTGATGTGGTGATCGATGACCGTTTAC
>XR_005639782.1
TTAGATTTTACATTTCTACATCTCTGGACCTTCGTACCTGAAACTTTCTCCACCAACTCTTCGGTAtctctcctgctgctgactctagaactcatctctctcctgtcattcagATCAACATGAAGATCTCTATCTTTGCTGGTGTTCTGCTGATCTCTGCTGCTCTCATGTTCCTCGGACCAGAACCTGCAGATGCTACGTACTTAAAGCGTTGCAGGCCAGTGATTTATCCTCGCCCGATATCCCCATGGATAAAACCGCAAATATGCAAGCCCAATCCGTGGTTATGCAAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107582 False 673 TUCP 0.52 6 40678343 40681458
TU107584 False 633 TUCP 0.53 5 40678343 40744812
TU107585 True 713 TUCP 0.52 7 40678343 40765467
XR_005639782.1 False 295 lncRNA 0.46 3 40743545 40745352

Neighbor

gene id symbol gene type direction distance location
pmvk pmvk coding downstream 190997 40480066 ~ 40487346 (-)
tmem79b NA coding downstream 314159 40354634 ~ 40364184 (-)
LOC120562375 NA coding downstream 426189 40245385 ~ 40252154 (-)
LOC120562374 NA coding downstream 477210 40180342 ~ 40201133 (-)
LOC120562362 NA coding downstream 503227 40125425 ~ 40175116 (-)
LOC120562399 NA coding upstream 45768 40811235 ~ 40816555 (-)
LOC120562403 NA coding upstream 118654 40884121 ~ 40888754 (-)
LOC120562505 LOC100690881,LOC102207812,LOC101474950 coding upstream 634343 41399810 ~ 41409787 (-)
myo1eb LOC104937078,LOC101474664,LOC102208361,LOC100691416,LOC102308324 coding upstream 849442 41614909 ~ 41660714 (-)
selenbp1 selenbp1 coding upstream 1238385 42003852 ~ 42047544 (-)
G80218 NA non-coding downstream 3441 40673468 ~ 40674902 (-)
G80185 NA non-coding downstream 186150 40490457 ~ 40492193 (-)
G80178 LOC103374405,LOC107095278,LOC104937304,LOC102793710,LOC100708478,LOC102303267 non-coding downstream 207096 40451313 ~ 40471247 (-)
G80177 NA non-coding downstream 233635 40444385 ~ 40444708 (-)
G80170 NA non-coding downstream 257911 40417078 ~ 40420432 (-)
G80246 NA non-coding upstream 44355 40809822 ~ 40810781 (-)
LOC120562421 NA non-coding upstream 86831 40852298 ~ 40852870 (-)
G80252 NA non-coding upstream 94919 40860386 ~ 40868841 (-)
G80253 NA non-coding upstream 96188 40861655 ~ 40875360 (-)
G80256 NA non-coding upstream 105863 40871330 ~ 40874725 (-)
G80186 NA other downstream 180747 40492323 ~ 40497596 (-)
G80129 NA other downstream 370820 40222367 ~ 40307523 (-)
LOC120562372 NA other downstream 443680 40203039 ~ 40234663 (-)
G80046 NA other downstream 816795 39779384 ~ 39861548 (-)
G80027 NA other downstream 1100404 39576663 ~ 39577939 (-)
G80488 NA other upstream 250383 41015850 ~ 41017192 (-)
G80498 NA other upstream 337776 41103243 ~ 41104094 (-)
LOC120562506 NA other upstream 647486 41412953 ~ 41421025 (-)
LOC120562392 LOC103132156,LOC108243373 other upstream 667574 41433041 ~ 41605388 (-)
LOC120562507 LOC105890369,LOC107379007,LOC105018870,LOC105012700,LOC103477466,LOC103369594 other upstream 872670 41638137 ~ 41998854 (-)

Expression


Co-expression Network