G80256


Basic Information

Item Value
gene id G80256
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40871330 ~ 40874725 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU107647
CAGAGGACACTGGCAGGAGACAATAGGAGTCCGTGGGTTCAGGTCCAGCTGGACGACGGCTCGTTTTTCTTCCTGGACTTGAAGAGACTGCAGGGAGGCTGGGAGAAACCCAAGGGCTTCATCCACAACAGCGTGTTCCTGGACCGGCAGCAGATACAGGAAGTGGTGAGCAGGGTTTCGGGCTCGTACAGCCGCAGCGTGCTGTGGCGGAGCAGCGAAGCCCtgctggtccgtctgcaggccGCCAGTCGAGGCTTCCTGCTCCGACAGAAGCTGCAGGCTCGACGAAGCTACCTGAGCAGCCACACACCTGCTGTCATCATCATCCAG

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0043570 maintenance of DNA repeat elements biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051276 chromosome organization biological_process
GO:0006259 DNA metabolic process biological_process
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0005874 microtubule cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03030 DNA replication
ko03430 Mismatch repair
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU107647 True 330 lncRNA 0.61 3 40871330 40874725

Neighbor

gene id symbol gene type direction distance location
LOC120562399 NA coding downstream 54775 40811235 ~ 40816555 (-)
pmvk pmvk coding downstream 383984 40480066 ~ 40487346 (-)
tmem79b NA coding downstream 507146 40354634 ~ 40364184 (-)
LOC120562375 NA coding downstream 619176 40245385 ~ 40252154 (-)
LOC120562374 NA coding downstream 670197 40180342 ~ 40201133 (-)
LOC120562403 NA coding upstream 9396 40884121 ~ 40888754 (-)
LOC120562505 LOC100690881,LOC102207812,LOC101474950 coding upstream 525085 41399810 ~ 41409787 (-)
myo1eb LOC104937078,LOC101474664,LOC102208361,LOC100691416,LOC102308324 coding upstream 740184 41614909 ~ 41660714 (-)
selenbp1 selenbp1 coding upstream 1129127 42003852 ~ 42047544 (-)
LOC120562508 NA coding upstream 1177250 42051975 ~ 42057548 (-)
G80252 NA non-coding downstream 2489 40860386 ~ 40868841 (-)
LOC120562421 NA non-coding downstream 18460 40852298 ~ 40852870 (-)
G80246 NA non-coding downstream 60549 40809822 ~ 40810781 (-)
G80229 NA non-coding downstream 112813 40756840 ~ 40758517 (-)
LOC120562416 NA non-coding downstream 147432 40721812 ~ 40723898 (-)
LOC120562414 NA non-coding upstream 35652 40910377 ~ 40911188 (-)
G80497 NA non-coding upstream 110325 40985050 ~ 40985350 (-)
G80507 NA non-coding upstream 222287 41097012 ~ 41097725 (-)
G80510 NA non-coding upstream 282273 41156998 ~ 41183899 (-)
G80512 NA non-coding upstream 283239 41157964 ~ 41186230 (-)
LOC120562415 NA other downstream 105863 40678343 ~ 40765467 (-)
G80186 NA other downstream 373734 40492323 ~ 40497596 (-)
G80129 NA other downstream 563807 40222367 ~ 40307523 (-)
LOC120562372 NA other downstream 636667 40203039 ~ 40234663 (-)
G80046 NA other downstream 1009782 39779384 ~ 39861548 (-)
G80488 NA other upstream 141125 41015850 ~ 41017192 (-)
G80498 NA other upstream 228518 41103243 ~ 41104094 (-)
LOC120562506 NA other upstream 538228 41412953 ~ 41421025 (-)
LOC120562392 LOC103132156,LOC108243373 other upstream 558316 41433041 ~ 41605388 (-)
LOC120562507 LOC105890369,LOC107379007,LOC105018870,LOC105012700,LOC103477466,LOC103369594 other upstream 763412 41638137 ~ 41998854 (-)

Expression


Co-expression Network