LOC120562409


Basic Information

Item Value
gene id LOC120562409
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40958368 ~ 40959705 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU107665
CTCCTATCTCTGCTGTTATGTCACTACGttatcttttatatatatattatatatctatcTCTATATACGTCACTGGACTTGTGTTTGTCCTCACTCTCAACGTGTAGTTCTACTTCCTCTCTgtcgggacgctagttaacaccacactcaacagcagACTggagctgctgttgtctgaaacacaagctgtttctcaatgtcaaggaaAGGATCCTTTGAAGCCAGAATTTGGAGGATGCTACGTCATCGACGTCCGTCGAAGGACCGTTCCAATGTCGAGGATCCTCCGAATCCCACCAAGGACTGAGTCCTTCGTTCGGAGAATTTCCCATAGACGGCAAAGGATGCATATGTGTATCCTTCGCGCTCCCAAATCACCCACAATCCTTTGCGCGCGGCTTTGTTGGcttgttttaaaaaattaaatggtGGACCTAAGCGGGAGTTGGAGCGGTATCGCTGACGGcgaaataatcatttaaatGGACAAACGGAGGCTGTCACTGAGGATgggaaagcaaaagacaagCAGGGAGACAAGAGGCCAAAGAGAGATGAATAGCTAGATTATTTGCTAAAGCCTTTTAGAGATTGGCattctgaaaataaatgcattaaattta
>XR_005639775.1
ccaGAAGTTGGAGTAAACACGTTAAAATGCtaacagctaaacggtgtaaattGTGTTCTGTATTTCACTCCAACACCAGACTggagctgctgttgtctgaaacacaagctgtttctcaatgtcaaggaaAGGATCCTTTGAAGCCAGAATTTGGAGGATGCTACGTCATCGACGTCCGTCGAAGGACCGTTCCAATGTCGAGGATCCTCCGAATCCCACCAAGGACTGAGTCCTTCGTTCGGAGAATTTCCCATAGACGGCAAAGGATGCATATGTGTATCCTTCGCGCTCCCAAATCACCCACAATCCTTTGCGCGCGGCTTTGTTGGcttgttttaaaaaattaaatggtGGACCTAAGCGGGAGTTGGAGCGGTATCGCTGACGGcgaaataatcatttaaatGGACAAACGGAGGCTGTCACTGAGGATgggaaagcaaaagacaagCAGGGAGACAAGAGGCCAAAGAGAGATGAATAGCTAGATTATTTGCTAAAGCCTTTTAGAGATTGGCattctgaaaataaatgcattaaattta
>XR_005639776.1
ttatatatatattatatatctatcTCTATATACGTCACTGGACTTGTGTTTGTCCTCACTCTCAACGTGTAGTTCTACTTCCTCTCTgtcgggacgctagttaacaccacactcaacagcagACTggagctgctgttgtctgaaacacaagctgtttctcaatgtcaaggaaAGGATCCTTTGAAGCCAGAATTTGGAGGATGCTACGTCATCGACGTCCGTCGAAGGACCGTTCCAATGTCGAGGATCCTCCGAATCCCACCAAGGACTGAGTCCTTCGTTCGGAGAATTTCCCATAGACGGCAAAGGATGCATATGTGTATCCTTCGCGCTCCCAAATCACCCACAATCCTTTGCGCGCGGCTTTGTTGGcttgttttaaaaaattaaatggtGGACCTAAGCGGGAGTTGGAGCGGTATCGCTGACGGcgaaataatcatttaaatGGACAAACGGAGGCTGTCACTGAGGATgggaaagcaaaagacaagCAGGGAGACAAGAGGCCAAAGAGAGATGAATAGCTAGATTATTTGCTAAAGCCTTTTAGAGATTGGCattctgaaaataaatgcattaaattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107665 True 623 lncRNA 0.44 3 40958368 40959705
XR_005639775.1 False 545 lncRNA 0.45 2 40958687 40959705
XR_005639776.1 False 588 lncRNA 0.44 3 40958403 40959705

Neighbor

gene id symbol gene type direction distance location
LOC120562402 NA coding upstream 50532 40907328 ~ 40907836 (+)
LOC120562405 NA coding upstream 121290 40830512 ~ 40837078 (+)
LOC120562500 NA coding upstream 298054 40655512 ~ 40660314 (+)
LOC120562386 NA coding upstream 408953 40510050 ~ 40549415 (+)
decr1 decr1 coding upstream 450395 40487603 ~ 40507973 (+)
LOC120562401 NA coding downstream 142343 41102048 ~ 41103783 (+)
LOC120562397 NA coding downstream 188159 41147864 ~ 41150002 (+)
LOC120562391 NA coding downstream 204038 41163743 ~ 41174846 (+)
LOC120562388 NA coding downstream 260379 41220084 ~ 41294381 (+)
LOC120562390 NA coding downstream 279378 41239083 ~ 41319704 (+)
LOC120562418 NA non-coding upstream 53407 40904261 ~ 40904961 (+)
G80237 NA non-coding upstream 82992 40861652 ~ 40875376 (+)
G80234 NA non-coding upstream 89517 40801396 ~ 40868851 (+)
G80230 NA non-coding upstream 176318 40775035 ~ 40782050 (+)
LOC120562410 NA non-coding upstream 176450 40779744 ~ 40781918 (+)
G80271 NA non-coding downstream 7645 40967350 ~ 40967816 (+)
LOC120562417 NA non-coding downstream 19405 40979110 ~ 40981627 (+)
G80280 LOC100709493,LOC102203400,LOC102799186,LOC102289534,LOC101466554,LOC103358480 non-coding downstream 85072 41044777 ~ 41045392 (+)
G80265 NA non-coding downstream 108479 41068184 ~ 41107726 (+)
LOC120562408 NA non-coding downstream 131772 41091477 ~ 41091914 (+)
LOC120562387 NA other upstream 301801 40645659 ~ 40656567 (+)
LOC120562499 LOC103374404 other upstream 517052 40378682 ~ 40441316 (+)
LOC120562498 LOC103369894 other upstream 613308 40290982 ~ 40345060 (+)
G80003 NA other upstream 637301 40316739 ~ 40321067 (+)
LOC120562364 LOC108234077 other upstream 1186948 39765173 ~ 39771420 (+)
LOC120562400 NA other downstream 48262 41007967 ~ 41012619 (+)
polr3glb NA other downstream 196769 41156474 ~ 41186945 (+)
G80320 NA other downstream 396775 41356480 ~ 41360206 (+)
LOC120562389 NA other downstream 417742 41377447 ~ 41393226 (+)
G80337 NA other downstream 461651 41421356 ~ 41456358 (+)

Expression


Co-expression Network