G80280 (LOC100709493,LOC102203400,LOC102799186,LOC102289534,LOC101466554,LOC103358480)


Basic Information

Item Value
gene id G80280
gene name LOC100709493,LOC102203400,LOC102799186,LOC102289534,LOC101466554,LOC103358480
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41044777 ~ 41045392 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU107680
CTCCTGGCTCGCGTGGTGCCCCAGGAACAGAGTTTTACTGAAGGTTACGCTGGGATATTTCACTTCCAGTTCTGGCAGTTTGGTGAGTGGGTGGATGTGGTGATCGATGACCGTTTACCCACAAGAAAAGGAAAGCTGCTGTTCGTTCACTCAGCGGAGCGCTCAGAGTTTTGGAGTGCGCTGCTGGAGAAGGCctacgccaaGTTGTATGGCAGCTATGAGGCCCTGACAGGAGGACACACTACTGAGGGTTTTGAGGATTTTACAGGAGGGATTGCAGA

Function

NR:

description
PREDICTED: calpain-2 catalytic subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107680 True 281 lncRNA 0.53 3 41044777 41045392

Neighbor

gene id symbol gene type direction distance location
LOC120562402 NA coding upstream 136941 40907328 ~ 40907836 (+)
LOC120562405 NA coding upstream 207699 40830512 ~ 40837078 (+)
LOC120562500 NA coding upstream 384463 40655512 ~ 40660314 (+)
LOC120562386 NA coding upstream 495362 40510050 ~ 40549415 (+)
decr1 decr1 coding upstream 536804 40487603 ~ 40507973 (+)
LOC120562401 NA coding downstream 56656 41102048 ~ 41103783 (+)
LOC120562397 NA coding downstream 102472 41147864 ~ 41150002 (+)
LOC120562391 NA coding downstream 118351 41163743 ~ 41174846 (+)
LOC120562388 NA coding downstream 174692 41220084 ~ 41294381 (+)
LOC120562390 NA coding downstream 193691 41239083 ~ 41319704 (+)
LOC120562417 NA non-coding upstream 63150 40979110 ~ 40981627 (+)
G80271 NA non-coding upstream 76961 40967350 ~ 40967816 (+)
LOC120562409 NA non-coding upstream 85072 40958368 ~ 40959705 (+)
LOC120562418 NA non-coding upstream 139816 40904261 ~ 40904961 (+)
G80237 NA non-coding upstream 169401 40861652 ~ 40875376 (+)
G80265 NA non-coding downstream 22792 41068184 ~ 41107726 (+)
LOC120562408 NA non-coding downstream 46085 41091477 ~ 41091914 (+)
LOC120562412 NA non-coding downstream 90558 41135950 ~ 41136174 (+)
G80299 NA non-coding downstream 170129 41215521 ~ 41598153 (+)
G80306 NA non-coding downstream 268319 41313711 ~ 41347897 (+)
LOC120562400 NA other upstream 32158 41007967 ~ 41012619 (+)
LOC120562387 NA other upstream 388210 40645659 ~ 40656567 (+)
LOC120562499 LOC103374404 other upstream 603461 40378682 ~ 40441316 (+)
LOC120562498 LOC103369894 other upstream 699717 40290982 ~ 40345060 (+)
G80003 NA other upstream 723710 40316739 ~ 40321067 (+)
polr3glb NA other downstream 111082 41156474 ~ 41186945 (+)
G80320 NA other downstream 311088 41356480 ~ 41360206 (+)
LOC120562389 NA other downstream 332055 41377447 ~ 41393226 (+)
G80337 NA other downstream 375964 41421356 ~ 41456358 (+)
LOC120561589 NA other downstream 637021 41682413 ~ 41693005 (+)

Expression


Co-expression Network