LOC120562389


Basic Information

Item Value
gene id LOC120562389
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41377447 ~ 41393226 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU107772
ggctgctaccagtggtcaaagcctccaacaaagctctactgagtggctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacaacctgcaggattcaggagtgaagctgatctctgatggactgaagagtccacactgcacactggagactctcagctctgagctccaacccttcccatctgagagagctggacctgagctacaatcatccaggagactcaggagtgaagcGACTGTCAGCGGGACTGAAGGATCctctctggagactggacactctcagattcctgtgaactcacactggacacaaacacagtgaacagaaaactcaaactgtctgacaacaacaggaaggtgacacgtGTGGAGGAgtatcagccatatcctgatcatccagagaggtttgacccCTGCTatcctcagctgctgtgtagagatggtctgactggtcgctgttactgggaggttgagaggagaggaagggttgatatatcagtgagttacagaggaaacagcaggagaggagacagaggtgactgttggtttggaggtaatgatcagtcctggagtctgatctGCTATGATAGTGGTTCCACTGTCAGTCACAATAACAGAGTaacatccatctcctcctcctctgtctctggtagagtagcagacatctcctcctcctctgtctctggtagagtagcagacatctcctcctcctctgtctctggtagagtagcagtgtatgtggactgtcctgctggctctctgtccttctacacagtctcctctgactcactgatccacctctacaccttcaacaccacattcactcagcctctctatccTGGGTTTGGGTTCTGGTCTcgtggttcctca
>TU107773
CATGgctaggcacttgtaatgacattttgaacatgtttagaggctaaaagcacatttaaaccttgccctgtttcagcctcctgggtgctaactCTAGCAGGAGGTTAACACGGTGCAGGCAGCaccgatgtttttgtttttctcgttACTGACAGCACTCAACAACAGAGCTACATGTTGAAGTCCACCGGAATTCTCTTTTAAATACCACAGACGATTTTAAAGGTGTATTCTAAATCTGGACCAAAATGTACctggacaacaaacaaacataaaacaaacacatggcTCCACGTGTTGACAGAgggttcctgtgtgttgttctgtgtgtttgaagtctgtcaggctgtctgatctcagaggaaggctgttcttctctggtctcagctctgagctccaacccttcccatctgagagagctggacctgagctacaatcatccaggagactcaggagtgaagcGACTGTCAGCGGGACTGAAGGATCctctctggagactggacactctcagattcctgtgaactcacactggacacaaacacagtgaacagaaaactcaaactgtctgacaacaacaggaaggtgacacgtGTGGAGGAgtatcagccatatcctgatcatccagagagACTGCTgaacgtctgcgtcccgactccgtcccagttccgtcagtccgcagccctccggagcagatatacgcagagcttctatttttgacggacgacagagagctccgcagcaattcagcacatgacagatagtgcgggacaggaagtcgagcacagaaacaaaataaatatccggttaattttcaaaataaaatacaccgtgctcacggtgGATCATATttcctgcactacaccttgaacacacagcacagagctgtttcccttctactcctctggatggaaacaaactggtGTTGGTTTtctggttctattctacctgaattcgcgagaacttgtgggtcctcgtgactacagctgtcagttatGGCCACAGCCGTTctgcaacaaatccggacctggtgggtattgccGGActgcggagcacgcagcagacacgcagcggagccggtccgcagccgtgACGCATCtagtggaaatccccggtaaGATCTGCTGACCAGCTACTCCTTGTTGTCCCTAGAACGCGGCTCAAAAATAGGGGAGATCGAGTGTTCTCAGTCGTGGCCCCAAGACTGTGGAATGAATTGCCTCTGAAAGTCAGACTGGCCCCCAGCCttcacatttttaaatcatGACTTAAAACTCACTTTTATTTATTGGCTTTCAAACCATCTTGAGAGTTGTATTTTGTattctgcattttatttttctagtctgttatttgttttaaatgtttgttttgttactcGCATGTTTATAATCATGTCAATgtccagca
>TU107774
TGTCGCAGCTTGTTCTCTCCGTGTGGAGCTCCAGCTGAAGaacccatcagagaccagaccctgctgaacctgaacctgaaccagaacctgagcccagctttgtgtccatgaagagtgaGCGGTTCATGGAGACACCATGGAGGCAACCTGTAAGGATAGACCAATTAaaatggaggagaggagaagagagagtcCAAGACAGAAGGAAAGGGAGGAACTTATTGAAATAAAGAGCCAAAGACTGAGG
>XM_039806104.1
CTTTCACTTCCCAGTTTGTGTCGCAGCTTGTTCTCTCCGTGTGGAGCTCCAGCTGAAGGTGGGGCTGTGACTCATCAGGAAACAACTCACCTGAGttcttcttcatcaactcttcttcatcaactctttgGACTGTTAGAAGAAACTaacccatcagagaccagaccctgctgaacctgaacctgaaccagaacctgagcccagctttgtgtccatgaagagtgaGCGGTTCATGGAGACACCATGGAGGCAACCTGTAAGGATAGACCAATTAaaatggaggagaggagaagagagagtcCAAGACAGAAGGAAAGGGAGGAACTTATTGAAATAAAGAGCCAAAGACTGAGgATCCAGCAGCAGAGACCAGAGtctcctgaacctgaacctgaacccagctgtttGTCCTTCAAGAGCGACCAGTCAAAGGAGGATTTTATGAATTTTAAACAAAGACATCCATCTGACAGAAAagtggaccaggagagctcagaggttcccactggtcagtctgcccagcagcatcaaacgcacctggactccatatttatgctgttgGAGGACAACATTGgcacttttgtgaagaacgAGCTGACGAAGATCCAGAACCTTTTGagtccagattacccagaatgcttaGAGAGTAACAGagaggatgaggatgaagagcaggagaggagcagtgaggcatttctgaagatcacactgcacttcctgaggagaatgaagcaggacGAGCTGGCTGACTGTCTGCAGAGCAGAAGTCGTTCTGGAGTTTGTAAGCGTAAACTGAAATCAAACCAGCAGaagaagttccagtgtgtgtttgagggtattgctaaagcaggaaacccaacccttctgaatctgatgttcacagagatctacatcacaGAAGGAGGAACTGCAGAGGTCAATGgtgaacatgaggtcagacagattgaaacagcatccaggaaaccagaaacaacaatcagacaagaagacatctttaaaaccccacctggaagagataaaccaatcagaacagtgatgacgacaggagtggctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaagccaaccaggacatccagttcacatttccatttaccttcagagagctgaatgtgctgaaagagagaaagtacagcttggtggaacttgttgattacttctttagtgaaaccaaagaagcaggaatctgcaggtttgaagagttcccggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttcctcaacactgagatcctgactgatgttacagagtccacctcagtggatttgctgctgacaaacctcatcagggggaatctgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatccctcctgagtgtgttgacatggtgacagaggtcagagggttcactgaccaacagaaggaggagtacttcaggaagagattcaaagatgaggagcaggcccgcaaaatcatctcccacatcaagacatcacggAGCCTCCATATCATGtgtcacatcccagtcttctgctggatcactgctgcaGTTCTGGAGGACATGttaaagaccagagagggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagaccaaagtgaagaaagtcaagtatgatggaggagctgCAACAGATCTACACTGGAGTCCAGACAGCAGGAAGATGATcgagtctctgggaaaactggcttttgagcagctgcagaaaggcaacctgatcttttatgaatcagacctgacagagtgtggcatcgatatcacagcagcctcagtgtactcaggagtgttcacacagatctttaaagaggagaaaggactgtaccaggacaaggtgttcaGCTTCGTCCATCTGAGCGTTCAGGAGTTtttggctgctcttcatgttcATGAGACATTCACCAACTCTGGAGTCATCCTGCTGTCAGAAGAACAAACAGGATCAAGACACttctaccagagtgctgtggacaaggccttacagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcactgcagaccaatcagaatctTCTACGAGGTCTGCTGACACAGACAGGAGGTATCTCACAGACAAATCAGGAAACAGTGgagtacatcaagaagaagatggATGAGAATCTGTCTGCtgagagaagcatcaatctgttccactgtctgaatgaactgaatgatggtTCTCTAGTGGAGCTGATCCAACGGTCCCTGAGTTCAGGACGTCTCTCGAcagataaactgtctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaagacGATCTGGACATGTTTGACCTGAATAAATATGgtgcttcagaggaggctcttctgaggctgctaccagtggtcaaagcctccaacaaagctctactgagtggctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacaacctgcaggattcaggagtgaagctgatctctgatggactgaagagtccacactgcacactggagactctcaggtaaGATCAAGAACAAGGAGAATAATCAAGAATAATCTTTGAAAACACagtattgaaaaaaaactttggaaagATTGAAAACGTGAATGTTTCCAAAGTATTTTATTATGATTTAGAATGAATCTAGATAACTGAAGAATGAAATATGAACTGTGGCTGACATCGAgaaatcatttatattttcataTAATGCGACTTTGATCACTGGACGTTTGTTTATTCCTGATTATACAACAAGGAGATCCGATCAGACAATCTGATGGTCAACTAGACATTTAGAACATACTCAAATTAGCATGATAGTACACCCAGAGCCATTTGAGCACACCTGGTACATCACATGCAATATTACTCATAGTTTGGGtcacatcagctgtttggatcacatcagctgttggATCACATCAGatgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107772 False 919 lncRNA 0.51 4 41386615 41392057
TU107773 False 1407 lncRNA 0.47 3 41388155 41393226
TU107774 False 247 lncRNA 0.50 2 41377465 41381254
XM_039806104.1 True 3110 mRNA 0.46 8 41377447 41387329

Neighbor

gene id symbol gene type direction distance location
LOC120562390 NA coding upstream 57743 41239083 ~ 41319704 (+)
LOC120562388 NA coding upstream 83066 41220084 ~ 41294381 (+)
LOC120562391 NA coding upstream 202601 41163743 ~ 41174846 (+)
LOC120562397 NA coding upstream 227445 41147864 ~ 41150002 (+)
LOC120562401 NA coding upstream 273664 41102048 ~ 41103783 (+)
LOC120562404 NA coding downstream 106959 41500185 ~ 41501659 (+)
LOC120562396 NA coding downstream 147864 41541090 ~ 41545594 (+)
LOC120562406 NA coding downstream 157865 41551091 ~ 41576503 (+)
LOC120561585 NA coding downstream 334340 41727566 ~ 41850702 (+)
LOC120562755 NA coding downstream 1134270 42527496 ~ 42529482 (+)
G80323 NA non-coding upstream 12733 41363538 ~ 41364714 (+)
G80322 NA non-coding upstream 13979 41362679 ~ 41363468 (+)
G80321 txnip,LOC102791564,LOC102307684,LOC101475238,LOC102207340 non-coding upstream 14894 41360459 ~ 41362553 (+)
G80306 NA non-coding upstream 29550 41313711 ~ 41347897 (+)
LOC120562412 NA non-coding upstream 241273 41135950 ~ 41136174 (+)
G80339 NA non-coding downstream 39820 41433046 ~ 41433547 (+)
G80346 NA non-coding downstream 91346 41484572 ~ 41486069 (+)
G80348 NA non-coding downstream 98618 41491844 ~ 41492653 (+)
G80351 NA non-coding downstream 109119 41502345 ~ 41503240 (+)
LOC120562422 NA non-coding downstream 135837 41529063 ~ 41530064 (+)
G80320 NA other upstream 17241 41356480 ~ 41360206 (+)
polr3glb NA other upstream 190502 41156474 ~ 41186945 (+)
LOC120562400 NA other upstream 364828 41007967 ~ 41012619 (+)
LOC120562387 NA other upstream 720880 40645659 ~ 40656567 (+)
LOC120562499 LOC103374404 other upstream 936131 40378682 ~ 40441316 (+)
G80337 NA other downstream 28130 41421356 ~ 41456358 (+)
LOC120561589 NA other downstream 289187 41682413 ~ 41693005 (+)
G80410 NA other downstream 546272 41939498 ~ 42006594 (+)
G80682 NA other downstream 1092109 42485335 ~ 42486009 (+)
LOC120562757 LOC104947480 other downstream 1139698 42532924 ~ 42539601 (+)

Expression


Co-expression Network