ube3d (ube3d,LOC102787972)


Basic Information

Item Value
gene id ube3d
gene name ube3d,LOC102787972
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 3332968 ~ 3367934 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU94071
ACAGATCCCTCTACCTGGAGCAGACGTTAGCAGCCAGGCTGTTGGGGCTGTCCACCTCAATGAGCACCTTCCACTTCTCTGTCCAGACTCCTGATGGAAAAGCCTTCTTATTGCTCTGGCTGCTGAACAGCGACTCCATCACAGCGTCGGTCCCACAGACGCGTGTCGGGGGAGACAGCTCTCTTCACAGTCCATCAGCCAGAGTCCTGAAACTCCTCTACACCGCCCGCTCTGACACAGGCATCCAACACAGAGAcatTGTATCTAGTTGGGAGGCCAATGCCATAGGACATCCCGTGGTGCTGCCACTGAAGGTGTGCGAGGAGCTGCTGCAAGTGATAGATGACAGCAACTCTGCACTTCCTGCCTCTATGCGTAGCATGAGGTACTATGAGGTGGCGTACCTGAGACTTTGAGGCCAAAAGGTCCAGTGACAGCAGGTCAATGCTCTACTCGTCAAATTTGGATAAGGACCTGGgacttgtttttttaagataatgttttgggcattttggcctttaattgataggacagttgtagacagggaggggagagagagaaaaaaaaaaaaagacatgcagcaaagggctgcaggtcagaatCGAACCTTGGGCCGCTGCGTTAAGGACTGAGCCGTGGTACATGGGGCACATGCTCTAcgaggtgagctaccagggcgccccgAGAGGAATCTTTtgttaatgtactgtatgtttgtatatgtCACGGTGACATCCTGCCCAGCTTTTCAGTAAGTATGAGAATAGAGATTACTGCAGAAGGAAATACAGCGAGCATGGAATGGAATGGCTCGTTTAGTCAAGTCAAGTTGTGGTTTCTGGTTGCTTCTGTCAACATGTTTGGTAGTGTGTGATCACCTGCTCAAACAGATTCATGTTGAAACAGGTTGGAGCCAGACTTCTAAATGTTAATACATATCCAGTAAATGCAAAAGAGGAGGAGAATGACATCAactttatagatagatagtaggggtggtacggttcatgaaaaaacacccgaaccgctcggttcgctagtctcggttcggagcatgtgtgtaccgcacggttcgtcagtacactgttaatgtgcactaacctcttactgccgtagtgcccactttcaacACCCatgttaaaacagttactggaaatgacgagcgggatgggcgtgacaaacgcaacccatggcagctgattggacgattgcgtcacatgggtctggctggtcccaaatttcaaagccagactgtcatggcggctcgttcagaatacgatctcatattgtactaaaatagttcaccgaaacgtgtttctgaaaacattttaagcgagaaataggccatgcagttgctgaatctgtcttcatttcagatcgacaaaggtcagtttaaaagattttggtcagattttgagagacaccgagccgaccgctcctcaagtggagtggggtgccgctgcaggtcacgtgacctgcagaaatgtccagtgggagagaggctgcccagagctggaggatgcaccagcgtcgtttatagtctggtgtgtgggaacattttggatttcacgttacctatgatgaaataaaaccatatagaactgccactgtgtgcacgttttgtgcaacatgcattcaatatgctaattttagctatatgctgaagtatattctggagtgataaagaaaaaataagaaccgtactgaaccgaaaaccgtgaccctaaaaccgtgatacgaaccgaaccgtgggttttgtgaaccgtaccacccctaataaatagatagatagatagatagatagatctcgtagttgtttaaacttttaatcCTAATCATAGAActaaaattgattttatttctatgaTCCTAATGTATAATTATATCAAAAAGTATCAGAGTGGTTGAAAAACTTGTATGTGAACATTGTATATCTGCCCATTCCATTCTCTACAAAAA
>XM_039804944.1
TGAAAGCATAACGCTCACAGGGATGCATTGTATTTATCCACATATGCAGACGGTTCTCTCGGATAAAAACCGGGTTGTAGCTTGTTGTCTACCTTCCTACGGTTAGATAGAGCTGCCTATTGTTGAGCTGACTTAATGGCAGACTTGGATATGCCTGCCAAAACACATGGAGTTGGAGTCTTCTTAGAGCTGAGAAAAAGGCTTCAGACGGGACTGCTTATTGTCGGGAAAGCTGTGGCCAGTAGTCCGGCAGATGTGGTCGTGACAGGGGGAGATTCCTCTCTCCACATCCGGACTCCCCGAGGCGAGCTGAGCCTGACTCTGCCGGCAGGAGTCACCTTGGAGCAGGGATCCTGTGTTCCGACACCTGCGGGGGAGTCCTGTGGAGAGGAGCTGCATTTCAGGCTGCGCATCAGCGTCACGCCAAGCGCAGATGAAGAGGCCTCCGACAGCGTGGTGGAGACGCTCCGGGCTAAAGAGACGTAttgcttccactgccagggctGCATGACCCGGCTGCTGGAGGACAGAGTGTTTAAGCGAGTTCTCCCTCTCCCTAATGGCAACTGGAACGCCATCGTGGACGACTGGTGTTGCCACCCCGATCCGTTCGCTAACAGGAAGCTGCTGCCCCGAGCCGAGGACTGTTTACTGGGCGACACCTTCCTCCTCCTAGCCAGAGATGGCGGCTGTGAACAGACCCTCGCTGAGGAAGTGAGCTCTGTTGGCTCAGAGGACAGTCAAGATTCCAAGAAAACGTGCCGCCGACTGGCACTCGTCTCCTGCAAGAGCTGTTCATTAGTGCTGGGAGAGGCCGTCGCACCAGAGAGCCTGAAACTGTACATCACACAGGTGGTGGTGGAACCCGCTGTGGGAGACAGAATGCCAGAGGCTTCACTTAACAGATCCCTCTACCTGGAGCAGACGTTAGCAGCCAGGCTGTTGGGGCTGTCCACCTCAATGAGCACCTTCCACTTCTCTGTCCAGACTCCTGATGGAAAAGCCTTCTTATTGCTCTGGCTGCTGAACAGCGACTCCATCACAGCGTCGGTCCCACAGACGCGTGTCGGGGGAGACAGCTCTCTTCACAGTCCATCAGCCAGAGTCCTGAAACTCCTCTACACCGCCCGCTCTGACACAGGCATCCAACACAGAGAcatTGTATCTAGTTGGGAGGCCAATGCCATAGGACATCCCGTGGTGCTGCCACTGAAGGTGTGCGAGGAGCTGCTGCAAGTGATAGATGACAGCAACTCTGCACTTCCTGCCTCTATGCGTAGCATGAGGTACTATGAGGTGGCGTACCTGAGACTTTGAGGCCAAAAGGTCCAGTGACAGCAGGTCAATGCTCTACTCGTCAAATTTGGATAAGGACCTGGgacttgtttttttaagataatgttttgggcattttggcctttaattgataggacagttgtagacagggaggggagagagagaaaaaaaaaaaaagacatgcagcaaagggctgcaggtcagaatCGAACCTTGGGCCGCTGCGTTAAGGACTGAGCCGTGGTACATGGGGCACATGCTCTAcgaggtgagctaccagggcgccccgAGAGGAATCTTTtgttaatgtactgtatgtttgtatatgtCACGGTGACATCCTGCCCAGCTTTTCAGTAAGTATGAGAATAGAGATTACTGCAGAAGGAAATACAGCGAGCATGGAATGGAATGGCTCGTTTAGTCAAGTCAAGTTGTGGTTTCTGGTTGCTTCTGTCAACATGTTTGGTAGTGTGTGATCACCTGCTCAAACAGATTCATGTTGAAACAGGTTGGAGCCAGACTTCTAAATGTTAATACATATCCAGTAAATGCAAAAGAGGAGGAGAATGACATCAactttatagatagatagtaggggtggtacggttcatgaaaaaacacccgaaccgctcggttcgctagtctcggttcggagcatgtgtgtaccgcacggttcg
>XM_039804946.1
GCTGCATGGCTGCAGACAATGAGCTGACTTAATGGCAGACTTGGATATGCCTGCCAAAACACATGGAGTTGGAGTCTTCTTAGAGCTGAGAAAAAGGCTTCAGACGGGACTGCTTATTGTCGGGAAAGCTGTGGCCAGTAGTCCGGCAGATGTGGTCGTGACAGGGGGAGATTCCTCTCTCCACATCCGGACTCCCCGAGGCGAGCTGAGCCTGACTCTGCCGGCAGGAGTCACCTTGGAGCAGGGATCCTGTGTTCCGACACCTGCGGGGGAGTCCTGTGGAGAGGAGCTGCATTTCAGGCTGCGCATCAGCGTCACGCCAAGCGCAGATGAAGAGGCCTCCGACAGCGTGGTGGAGACGCTCCGGGCTAAAGAGACGTAttgcttccactgccagggctGCATGACCCGGCTGCTGGAGGACAGAGTGTTTAAGCGAGTTCTCCCTCTCCCTAATGGCAACTGGAACGCCATCGTGGACGACTGGTGTTGCCACCCCGATCCGTTCGCTAACAGGAAGCTGCTGCCCCGAGCCGAGGACTGTTTACTGGGCGACACCTTCCTCCTCCTAGCCAGAGATGGCGGCTGTGAACAGACCCTCGCTGAGGAAGTGAGCTCTGTTGGCTCAGAGGACAGTCAAGATTCCAAGAAAACGTGCCGCCGACTGGCACTCGTCTCCTGCAAGAGCTGTTCATTAGTGCTGGGAGAGGCCGTCGCACCAGAGAGCCTGAAACTGTACATCACACAGGTGGTGGTGGAACCCGCTGTGGGAGACAGAATGCCAGAGGCTTCACTTAACAGATCCCTCTACCTGGAGCAGACGTTAGCAGCCAGGCTGTTGGGGCTGTCCACCTCAATGAGCACCTTCCACTTCTCTGTCCAGACTCCTGATGGAAAAGCCTTCTTATTGCTCTGGCTGCTGAACAGCGACTCCATCACAGCGTCGGTCCCACAGACGCGTGTCGGGGGAGACAGCTCTCTTCACAGTCCATCAGCCAGAGTCCTGAAACTCCTCTACACCGCCCGCTCTGACACAGGCATCCAACACAGAGAcatTGTATCTAGTTGGGAGGCCAATGCCATAGGACATCCCGTGGTGCTGCCACTGAAGGTGTGCGAGGAGCTGCTGCAAGTGATAGATGACAGCAACTCTGCACTTCCTGCCTCTATGCGTAGCATGAGGTACTATGAGGTGGCGTACCTGAGACTTTGAGGCCAAAAGGTCCAGTGACAGCAGGTCAATGCTCTACTCGTCAAATTTGGATAAGGACCTGGgacttgtttttttaagataatgttttgggcattttggcctttaattgataggacagttgtagacagggaggggagagagagaaaaaaaaaaaaagacatgcagcaaagggctgcaggtcagaatCGAACCTTGGGCCGCTGCGTTAAGGACTGAGCCGTGGTACATGGGGCACATGCTCTAcgaggtgagctaccagggcgccccgAGAGGAATCTTTtgttaatgtactgtatgtttgtatatgtCACGGTGACATCCTGCCCAGCTTTTCAGTAAGTATGAGAATAGAGATTACTGCAGAAGGAAATACAGCGAGCATGGAATGGAATGGCTCGTTTAGTCAAGTCAAGTTGTGGTTTCTGGTTGCTTCTGTCAACATGTTTGGTAGTGTGTGATCACCTGCTCAAACAGATTCATGTTGAAACAGGTTGGAGCCAGACTTCTAAATGTTAATACATATCCAGTAAATGCAAAAGAGGAGGAGAATGACATCAactttatagatagatagtaggggtggtacggttcatgaaaaaacacccgaaccgctcggttcgctagtctcggttcggagcatgtgtgtaccgcacggttcg

Function

symbol description
ube3d Predicted to enable cyclin binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human UBE3D (ubiquitin protein ligase E3D).

NR:

description
E3 ubiquitin-protein ligase E3D

GO: NA

KEGG:

id description
K20803 UBE3D; ubiquitin-protein ligase E3 D

RNA

RNA id representative length rna type GC content exon number start site end site
TU94071 False 1959 TUCP 0.46 4 3345475 3367934
XM_039804944.1 True 1976 mRNA 0.52 11 3332968 3367050
XM_039804946.1 False 1872 mRNA 0.53 11 3335175 3367050

Neighbor

gene id symbol gene type direction distance location
prss35 prss35,LOC104949834 coding upstream 163794 3163016 ~ 3169174 (+)
prdm13 prdm13,LOC102783984 coding upstream 486022 2840205 ~ 2846946 (+)
zgc:172323 LOC104953825,LOC100700401,LOC102293068,LOC102783698,LOC101479285,LOC103354301 coding upstream 498627 2828827 ~ 2834341 (+)
tstd3 NA coding upstream 504643 2823361 ~ 2828325 (+)
pou3f2b pou3f2,LOC102224898,LOC107378829 coding upstream 738846 2592145 ~ 2594122 (+)
tent5aa LOC104929946,LOC103354291,LOC100698511,LOC103388593 coding downstream 131253 3499187 ~ 3503888 (+)
ebag9 ebag9 coding downstream 486212 3854146 ~ 3872900 (+)
LOC120561648 LOC106523394 coding downstream 521081 3889015 ~ 3890058 (+)
seh1l seh1l coding downstream 1095503 4463437 ~ 4472667 (+)
cep192 cep192 coding downstream 1106072 4474006 ~ 4571309 (+)
G70209 NA non-coding upstream 170699 3161984 ~ 3162269 (+)
G70208 NA non-coding upstream 171569 3160017 ~ 3161399 (+)
G70202 NA non-coding upstream 240596 3081222 ~ 3092372 (+)
LOC120562088 NA non-coding upstream 242276 3088979 ~ 3090692 (+)
LOC120562087 NA non-coding upstream 250052 3081205 ~ 3082916 (+)
G70310 NA non-coding downstream 47523 3415457 ~ 3415949 (+)
LOC120561650 NA non-coding downstream 59290 3427224 ~ 3435062 (+)
LOC120561652 NA non-coding downstream 110605 3478539 ~ 3480074 (+)
G70403 NA non-coding downstream 249129 3617063 ~ 3617269 (+)
G70440 NA non-coding downstream 415897 3783831 ~ 3784168 (+)
G70115 NA other upstream 617567 2713437 ~ 2715401 (+)
iqcg NA other upstream 2024167 1298452 ~ 1308801 (+)
G69701 NA other upstream 2267681 1057234 ~ 1065287 (+)
LOC120561945 znf706,LOC107103982,LOC102223041,LOC103478835 other upstream 3141271 184854 ~ 191697 (+)
ibtk ibtk,LOC102788528 other downstream 73572 3441506 ~ 3475311 (+)
G70338 NA other downstream 165950 3533884 ~ 3535062 (+)
LOC120561848 NA other downstream 258004 3625938 ~ 3627681 (+)
LOC120561654 NA other downstream 267039 3634973 ~ 3635830 (+)
G70460 NA other downstream 506511 3874445 ~ 3893927 (+)

Expression


Co-expression Network