XLOC_004629 (rsph10b)


Basic Information

Item Value
gene id XLOC_004629
gene name rsph10b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17620067 ~ 17633727 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009168
ACTGACAGCTTGTTACTATGTACACTCCAGAGGCGGGGTTCAGGCTTTCTTAATAGCGGCGATGGCTAGAGGAGACAACATGAAAAGTTCTAACAAATCTACACCAGAACCAACTTTGAGTAAGACGTTAGTAGAGTCCTCCACGTCCAGTTTATTGTCGGAGTCCGTCGTAGAACCGGAGGATGGACAAGACTTGTCGAGCTCAGCTGTGTGTTCCGCATCTACCGTTTCTCTGCCCCCGAATGAAAATCAACCTATTGGAGAGCACGACCGGTGCCGTAAAGTTCCCGTTCTTCACAGTATAATCGTGGAAAGatatGAGGGTGAAAAGTGTGGAGAGATGTTTCATGGAGAAGGGGTCGCTTATTTTCAAGGTGGTCATGTTTACAAGGGTAGTTTTTCGCATGGGTTAATGCATGGCTATGGTGAATATATCTGGTCAGACGGTTTAAAGTATCAGGGTGATTTCAAAGTAAATGTTCCCATGGGTCACGGGACATACACATGGCTAAATGGCAGCACGTATGAGGGAGAAGTGCACCAAGGTATCCGTCATGGTGTCGGAATGTATAAATGTGTCAAAACCTTAACAGTGTACAGAGGTCAGTGGTACCTGGGGAAAAGACAAGGGCAGGGGGAAATGTTCTATAACCAAGAAGCCACATCATGGTACAAGGGCGAATGGGTGAACAACTGCAAAGAGGGATGGGGAAAACGGTGTTACCCATCTGGAAATGTGTATGAGGGGCAATGGAGGAATAATGTTCGACATGGAGAAGGAACAATGAGATGGATTGATTTGGATCAACAGTACAGTGGGCAGTGGATAAACGGCACCCAGGAGGGAAAAGGAACACACACATGGTTCCGTAAAAGAGCTCCATCCTCTCAGTACCCTCGCATGAACGAGTACACTGGAGATTTCGTTCAGGCCATGCGTCATGGTCAAGGACAGTTTTTATATGCCAGTGGGGCTTTGTATTGTGGACAGTGGAAGTATGATAAAAAACACGGACAGggGAGATACATCTTTGAAAATGGAAGGGTGTATGAAGGGGAGTTTAGTAAAGACTGCATGGCTGAGTTTCCCGCCTTCACTCCTGGTCTGAGTGGGATTACGACTCCTTTTCCAGATGAGAATGATTCATCCAAGGGAGCGTCACAGTCAAGCAGTAACGCCTCACCTCTCGGATCTGACATGGTTTTAAACATCCAGACCCTTTTAAATAGAGTTTCTGAGGCCCACAGAGAGCAAGAGTTCAAACAGGTGGAATTTGCAGTGCTGAGACACATGGGTTTGTTGAGGGAAATTTATAGCTTCTACAGCAGCCTCGGACATGAACAGTCTTTAGACAAAATATTCCCACTGACCCACCTACAGTTTTCGCGCTTTCTCCTGGACTGCAGGGTTCACCAGCATGGAGTCACACTAGCACAAATATATTGTCTTATCAATGttcaTTCTCCTTTCACTGCAATTCTTCCAAGAGAGTGTATCAGCTATATTATCATTATAGCGTATCATATTTGCCACAAAGATATTGAATCCTCAAATAACATACTTGCAGCATGTTTTTCAAAGCTCATGAAGCAGAACATCATTCCCAATGCAAAAAGTGTGAAAGGGCACTTGTTCTGCCATCCTGTCCATGCTGCAGTTGCATTGAACTACTCCGACAAGTGCTGGGAAATTTACCAGGCATTGTGTGAAGCACATTCAGTCTTCACTGTCAGACAGTTTGTCTTGATGCTGAAGGACCTCTGTCTATATGATAATGAGCTAACTGTGTCCAAACTGATAAGGACCCTCTCTGTGGACAGTCCTGCAATTCATGATGGGACTTACAGCAACCTGGACCTGGAGATGAGCTTTCTGGAGTTCTTTGAGGCATTGCTGGGCTGTGCTGAGCTGAAAGGCCAGAAAATCCAAAGTTACGATGAAAGCCAGACTGACGCAAGTCTTCAGGATCACATAtcATCCCTGTCCAAGGAGAAGGAGCAAAGACAAAGTCCCGTGCTGGCTTACCAAGAGACAGAGTTGAATGACTGGATGCACAAAACACAGCAGTTCTTCAATCAGACCTTCCTTCCTGCATACGAGCTCAAAGTGAAGGTGGAGGAGGAGACATTCAGGCTGAGAGACAACACAACTACAAGATATACAGAACAGCTGGAGCTTAAAGAGAAACAAGAGCAAGATGCAGATGGAAATGAACTGTGCCCTGTGACCACCACATCTGTCACCTCAATACACTAGCAGAAGAATCAAAACTTACAAGTACATcggattttcttatgatttaatcaacaattttcaacatattttaaaacctttaagaTACAATATTTTCTGAGGTCAAACTGTATAGAAATATTAAATGGCTGTATCTAATGCCCTCATTATAAAGTACAAAAAGTAAGCTGCATATAAATGGACATTCATCAAAGCAATCTAATTTAACAACCAAAACAAGAATAATAAAAGGATCCGTATTTAAACAAA
>TCONS_00009169
CCACTGACCCACCTACAGTTTTCGCGCTTTCTCCTGGACTGCAGGGTTCACCAGCATGGAGTCACACTAGCACAAATATATTGTCTTATCAATGGTAATGTATTTGAGCATCTGAATGCTGAGTGAAGATTTCTGTTTTATTAACAAGTAATTATTAACaagttttcttctctttttttttcgtttttcttgtctttttttaattcttgtctttttttatatttaagttcaTTCTCCTTTCACTGCAATTCTTCCAAGAGAGTGTATCAGCTATATTATCATTATAGCGTATCATATTTGCCACAAAGATATTGAATCCTCAAATAACATACTTGCAGCATGTTTTTCAAAGCTCATGAAGCAGAACATCATTCCCAATGCAAAAAGTGTGAAAGGGCACTTGTTCTGCCATCCTGTCCATGCTGCAGTTGCATTGAACTACTCCGACAAGTGCTGGGAAATTTACCAGGCATTGTGTGAAGCACATTCAGTCTTCACTGTCAG

Function

symbol description
rsph10b Orthologous to several human genes including RSPH10B2 (radial spoke head 10 homolog B2).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-300 Orthologous to several human genes including RSPH10B2 (radial spoke head 10 homolog B2).

Ensembl:

ensembl_id ENSDARG00000051891

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009168 False 2503 mRNA 0.44 18 17620067 17633727
TCONS_00009169 True 504 lncRNA 0.37 3 17626350 17630707

Neighbor

gene id symbol gene type direction distance location
XLOC_004628 pms2 coding upstream 543 17603528 ~ 17619524 (+)
XLOC_004627 cyth3a coding upstream 57364 17504559 ~ 17562703 (+)
XLOC_004626 atad1b coding upstream 163984 17436904 ~ 17456083 (+)
XLOC_004625 NA coding upstream 192687 17424431 ~ 17427380 (+)
XLOC_004624 AL731788.1 coding upstream 274400 17345550 ~ 17345667 (+)
XLOC_004630 CR932017.1 coding downstream 67898 17701625 ~ 17739456 (+)
XLOC_004631 bhlha15 coding downstream 121132 17754859 ~ 17756905 (+)
XLOC_004632 tmem130 coding downstream 231647 17865374 ~ 17875270 (+)
XLOC_004633 trrap coding downstream 294144 17927871 ~ 18105116 (+)
XLOC_004634 BX005075.1 coding downstream 491931 18125658 ~ 18125774 (+)
XLOC_004618 dre-mir-107a non-coding upstream 659286 16960693 ~ 16960781 (+)
XLOC_004615 NA non-coding upstream 745364 16742395 ~ 16874703 (+)
XLOC_004614 NA non-coding upstream 1035013 16583373 ~ 16585054 (+)
XLOC_004635 NA non-coding downstream 576144 18209871 ~ 18228004 (+)
XLOC_004644 AL772266.2 non-coding downstream 965123 18598850 ~ 18598964 (+)
XLOC_004648 NA non-coding downstream 1227551 18861278 ~ 18867975 (+)
XLOC_004660 NA non-coding downstream 1634032 19267759 ~ 19271156 (+)

Expression


Co-expression Network