G71470 (rrp15,LOC106584165,LOC106605018)


Basic Information

Item Value
gene id G71470
gene name rrp15,LOC106584165,LOC106605018
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8748943 ~ 8751443 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU95565
TGTCCTTTTCAGTCTTGCCGGTGACTCCGCTGCCTTCCTCGGTCCTTCTTAGCACATCGATAAAGTCTTTCTTAGAGACAGATGAAAGAAATTTGGTCTTCTTCCTCTCTGAGCCACCAAATTCCTTCACCTTGTTATCGATTGTTTTCTGGTGTTTCCTCACAGCATTGAACAGCTGCACCACCCCTCTGGTAGCAATCCTCTGTAGAGCTCTTTCAGTCTCACGGTCCTTCACTATGTCAGGTTTCTCTCTGCACATCATCTCCCACGCTCGCTTCTTGTCAACctgtttctttctctccagctgctcctttctttcttttacctTCATCTTGTCCAGCTCTTTGTTCTTTACCAGGATGCTGGTTTTGCTCTCTGGGGTTTTCTTCCCCAGGATCTTTGCCATGGCCTCTGCCCATCCAGCATTGGCATTACCCTCATCTGCCTCTTTATCCTCTTCTCCATCTTCATCCTCCGCCTCCTCGCCATTACTCCCTCCTTCGCCATCTCGGTCATCTTCTCCTCCATCACTCGCGCCATCATCTGACCTTTCATCGTTGCTCCCTCCTTCAGAATCACTCTGCTGCGCATCGTCTCCTAAGTCACACAAGGAAATACAAacaattagggatgcaccgaatattcggccgaaatacttttatcaccgaaacaatacggccgaaaacattgtgatgacgcaaacagaaaccgcgacctgcacgtgtg

Function

symbol description
rrp15 Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to act upstream of or within rRNA processing. Predicted to be part of preribosome, large subunit precursor. Orthologous to human RRP15 (ribosomal RNA processing 15 homolog).

NR:

description
PREDICTED: RRP15-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95565 True 726 TUCP 0.48 3 8748943 8751443

Neighbor

gene id symbol gene type direction distance location
LOC120562241 NA coding upstream 244491 8454764 ~ 8504452 (+)
pomgnt2 pomgnt2 coding upstream 364323 8364356 ~ 8384620 (+)
zgc:114181 LOC104932954,LOC102799802,LOC101469313 coding upstream 550082 8187287 ~ 8198861 (+)
rwdd1 rwdd1 coding upstream 627617 8114521 ~ 8121326 (+)
LOC120561725 fam26e,LOC103478772,LOC106963711 coding upstream 639578 8104864 ~ 8109365 (+)
LOC120562991 LOC103388880 coding downstream 336741 9088184 ~ 9101502 (+)
popdc3 popdc3 coding downstream 364268 9115711 ~ 9123087 (+)
bves bves coding downstream 376407 9127850 ~ 9144754 (+)
hace1 hace1 coding downstream 396172 9147615 ~ 9190089 (+)
ascc3 ascc3 coding downstream 1255832 10007275 ~ 10200405 (+)
G71463 NA non-coding upstream 5153 8743528 ~ 8743790 (+)
LOC120561615 NA non-coding upstream 101234 8646964 ~ 8647709 (+)
G71429 NA non-coding upstream 128604 8594033 ~ 8620339 (+)
G71424 NA non-coding upstream 193665 8552529 ~ 8555278 (+)
G71421 NA non-coding upstream 200153 8548532 ~ 8548790 (+)
G71476 NA non-coding downstream 14451 8765894 ~ 8766134 (+)
G71475 NA non-coding downstream 17245 8768688 ~ 8769064 (+)
G71517 NA non-coding downstream 371720 9123163 ~ 9125732 (+)
G71553 NA non-coding downstream 569009 9320452 ~ 9320696 (+)
G71554 NA non-coding downstream 572374 9323817 ~ 9324017 (+)
ano10a ano10 other upstream 439199 8283380 ~ 8309744 (+)
G71309 NA other upstream 626704 8121601 ~ 8122239 (+)
G71147 LOC103388722,LOC104941093,LOC103369890 other upstream 947563 7731022 ~ 7801380 (+)
znrf2b znrf2 other upstream 1248761 7456767 ~ 7500182 (+)
cdk14 cdk14 other upstream 1456508 7039163 ~ 7292435 (+)
LOC120561899 LOC104959271 other downstream 8603 8760046 ~ 8776508 (+)
trnay-gua_1 NA other downstream 58908 8810351 ~ 8810439 (+)
trnay-gua_2 NA other downstream 59291 8810734 ~ 8810823 (+)
trnay-gua_3 NA other downstream 59666 8811109 ~ 8811197 (+)
trnay-gua_4 NA other downstream 60805 8812248 ~ 8812336 (+)

Expression


Co-expression Network