LOC120561899 (LOC104959271)


Basic Information

Item Value
gene id LOC120561899
gene name LOC104959271
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8760046 ~ 8776508 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU95576
AACTCCACTACGATACTGGCAACTATAAGGTCTATGATGTGTTTACTGGCTCGACGATGAAGGTGTTGAACGCCACTACAGAGTTCTCCGTCTCCATCAATCCCTCAGGTGTTGTCATGTGGTACGTTTACACAGAACAACAATCCAAACAGATGGAGATACTCCACTACCAGCAAAAGAAAGCCTCACCGTTCACATTACACAAAGCTAAACCTGGGCATCATACTGTGTTATGAAGAAACGTTTgtggaaaggaaaaaaatgctaaGCTGGTATTTTATAGAATCATTTAAAAGGCGGACAGGCTCAATCAAAACCATCTCAACCCGATTTTGAATTATCATTGAACAGATATATATTCTTTTGCACTGATGTTCACCAAACCTAATattgtgttctttttttaattgtttagaGGGGCCTTTCCGttgaatttaataaaacatttgttgTCCTTTTTTAAGATGTTTGTGCCAGTAAGTAATTttgtcaaaatatatataaaattgtgaCATAATTAATACATAAATTCAGGGGAAGTAACAAttatgtagttttttttgtgtacgTATTTTGTGTACTTACACGCCGACCTGACAATCATGATAGAGACTTAgcaatagggttgggtaccgtttggatttttacgattccgatgccaaaccggtacttttaaaacaattccgattcctaaaccaattcttgaaaaactgaaaaatgacataaaagaaaggcttttttatggagtttttttttattgaaaattatttaaatttaacaatatattaacgttttaaagtacttaaatatataataagtaaacctaagtcactaacgcacaactacaataatttactttagcagttcttttgcagaaaaatgaccatatttgactgatttatggcatgtcctgcacaggagaaaactctctcagatagtgtccaagaggtctgtacacacccaggtatgagtttgaaagggcagacaatttggggaggctgtccggcgtcccccaccaccaggctacaggctcttgtcctgaacaatagactagcagagcaagtgtaatatgtttactagcgatcacctgcagtcagtgaatggttaatatgcatttacgtccgttttggtgagcccagagggaaaatatggcattttaaatgtagcctacatttacggtagctagctaacggtagactacagagaaagtgtgatgtttttacgtccgtttcggagcgtgtacaaaaagcagccatctatcagcagtgattgtagagtgcatgtcacagaatagcgcggacatgcgcttcacaccgcgagcgggcacgtgccTCCCTCTGCCGCTGTCCGGAACGACAGAGGGAAagtatttcagtcggaaccgaaatgaggaaccgaaatttgtgTTCtgatccggtccgaatactaccgtttgcataggaaccggttccatagtggaaccgggtttcggtacccaaccctacttagcAATGCTTGtccatggcactgtgtacattcaaatagatgtgaacttgtttttgggtgttgttgGGTCTGTGTTTTCATCTGTTTCATCTCTGACCCTcccactgtgtgttttcacttcattaaagttaattggaacattcTGGTCACCTAAAAATTTCCTGTTCAGCATTTTGCCAaccaggctagctagctagctactgctaCCTCTGTTATAAATATTTTAGCATGTGTGAGCACATACATCTAAGGCAGACTTTCTCAACCACTAGGCCGCGAGTACTGTCTAGTGGGCCGCAAAATATTTTCAACTTGATATTCACTTTTTGTGAGTAAAGATATATTTCTTTAATAAAGTAGATTAATCTAATAATATGATGGCAATTGGATGCTCAAATTGTATTAAGTTTATAAATGattattcaaaataattaattattaattatataaagtCCCTTCTCAAACAACGTCATCAATTTACGACGCTCAGTTTATTGACAGTTAGCCTAGGCACGGTGAGTGGTAAGTTCCTGAAGGGAAAAAACAATGACGTTGCATTAGTATTAGAGATGCAACAATTATAGATTTTGTTGTTACAAATATAGTCTGAGAAATAATCATGGATTATGCATTCATTAATTTCACAACACTAATGTATATAATCACATGAACACTTCAGATTTGTATGTGTTATTTAATGCTGCCTTAACACAATAataaccaataataataataataataaccaatGGCTCTTTTGATGAAATAgatcacaaaatgatttagtTTTGTAAGTTGGTACATTCTATCAATATTTCTTTTGGACCTGAGGTTTATTACTGAGATGGAGGACTTGGTAACATGGTTAAAAAGATCTTGTTGgtttttatataaatgtataacATGTATAACATAAATAATACTATAACATGG
>XM_039805233.1
GTTTACCTAACCAGGAAGAGATGAGTGCAGCTCAGTAGTAAATCCAGGAAGAAGAGAGGGCAGTCATATGCCTGCAATAACTATACATACACTGATTATTTCAGGTAAACAGAAATGGGGCTCTTAGCAGCAACTCCGCTCCTTGTCATGATCTCACTGACTGTGTCGCTAGACAACGGACTGCTGAAGACTCCACCTATGGGATGGATGGCCTGGGAACGCTTTCGCTGTGATATTGACTGTAAAGATGACCCAGAGAATTGCATCGGCGAAACTCTGTTTAGAGACATGGCTGACCGGTTGGCTGAGGATGGCTGGAAGGAGCTGGGCTATGAGTATGTAATCATAGACGACTGCTGGATGTCCATGCTGAGAGATGAACTAGGGAGGCTGCAACCGGAACCCTCCAGGTTGGTCTCCTTTTCTCACTTTGCAAAATCAGCATGTCTGTGCTCTATCAACAGTCATTACTGTGCAATTATTTGTCTTAAAAGCAATACAGTAGAGACTTTCAGTTTCACTCATTTAAATTGTCCTAATGGCCCCCTGGAGtactaCTACGATACTGGCAACTATAAGGTCTATGATGTGTTTACTGGCTCGACGATGAAGGTGTTGAACGCCACTACAGAGTTCTCCGTCTCCATCAATCCCTCAGGTGTTGTCATGTGGTACGTTTACACAGAACAACAATCCAAACAGATGGAGATACTCCACTACCAGCAAAAGAAAGCCTCACCGTTCACATTACACAAAGCTAAACCTGGGCATCATACTGTGTTATGAAGAAACGTTTgtggaaaggaaaaaaatgctaaGCTGGTATTTTATAGAATCATTTAAAAGGCGGACAGGCTCAATCAAAACCATCTCAACCCGATTTTGAATTATCATTGAACAGATATATATTCTTTTGCACTGATGTTCACCAAACCTAATattgtgttctttttttaattgtttagaGGGGCCTTTCCGttgaatttaataaaacatttgttgTCCTTTTTTAAGATGTTTGTGCCAGTAAGTAATTttgtcaaaatatatataaaattgtgaCATAATTAATACATAAATTCAGGGGAAGTAACAAttatgtagttttttttgtgtacgTATTTTGTGTACTTACACGCCGACCTGACAATCATGATAGAGACTTAgcaatagggttgggtaccgtttggatttttacgattccgatgccaaaccggtacttttaaaacaattccgattcctaaaccaattcttgaaaaactgaaaaatgacataaaag

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95576 True 2415 lncRNA 0.37 2 8770205 8776508
XM_039805233.1 False 1279 mRNA 0.40 5 8760046 8774822

Neighbor

gene id symbol gene type direction distance location
LOC120562241 NA coding upstream 255594 8454764 ~ 8504452 (+)
pomgnt2 pomgnt2 coding upstream 375426 8364356 ~ 8384620 (+)
zgc:114181 LOC104932954,LOC102799802,LOC101469313 coding upstream 561185 8187287 ~ 8198861 (+)
rwdd1 rwdd1 coding upstream 638720 8114521 ~ 8121326 (+)
LOC120561725 fam26e,LOC103478772,LOC106963711 coding upstream 650681 8104864 ~ 8109365 (+)
LOC120562991 LOC103388880 coding downstream 311676 9088184 ~ 9101502 (+)
popdc3 popdc3 coding downstream 339203 9115711 ~ 9123087 (+)
bves bves coding downstream 351342 9127850 ~ 9144754 (+)
hace1 hace1 coding downstream 371107 9147615 ~ 9190089 (+)
ascc3 ascc3 coding downstream 1230767 10007275 ~ 10200405 (+)
G71463 NA non-coding upstream 16256 8743528 ~ 8743790 (+)
LOC120561615 NA non-coding upstream 112337 8646964 ~ 8647709 (+)
G71429 NA non-coding upstream 139707 8594033 ~ 8620339 (+)
G71424 NA non-coding upstream 204768 8552529 ~ 8555278 (+)
G71421 NA non-coding upstream 211256 8548532 ~ 8548790 (+)
G71517 NA non-coding downstream 346655 9123163 ~ 9125732 (+)
G71553 NA non-coding downstream 543944 9320452 ~ 9320696 (+)
G71554 NA non-coding downstream 547309 9323817 ~ 9324017 (+)
G71557 NA non-coding downstream 594496 9371004 ~ 9371948 (+)
G71562 NA non-coding downstream 678867 9455375 ~ 9455641 (+)
G71470 rrp15,LOC106584165,LOC106605018 other upstream 8603 8748943 ~ 8751443 (+)
ano10a ano10 other upstream 450302 8283380 ~ 8309744 (+)
G71309 NA other upstream 637807 8121601 ~ 8122239 (+)
G71147 LOC103388722,LOC104941093,LOC103369890 other upstream 958666 7731022 ~ 7801380 (+)
znrf2b znrf2 other upstream 1259864 7456767 ~ 7500182 (+)
trnay-gua_1 NA other downstream 33843 8810351 ~ 8810439 (+)
trnay-gua_2 NA other downstream 34226 8810734 ~ 8810823 (+)
trnay-gua_3 NA other downstream 34601 8811109 ~ 8811197 (+)
trnay-gua_4 NA other downstream 35740 8812248 ~ 8812336 (+)
trnay-gua_5 NA other downstream 36838 8813346 ~ 8813434 (+)

Expression


Co-expression Network