LOC120562885


Basic Information

Item Value
gene id LOC120562885
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 10748123 ~ 10752652 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU95883
GAAAACACCAAAAAAGAAGATATTCAGATCAGGAAGACAGCCTCTGGTTGGTCGACACACTCACCTGACAACATTCCGGGAGTCAAGATGGCTGGAGCCTGTAAACAGTGGATTTATGGTTCCTGAATTATTGTGCAAAGTCTCAGAAAAGACACTGCAGTTTCAGACTGGATTAGAAAGCTTCTGGAAGGCCTAGTGGGAGACCTCCCTGGAAAGGGCCAGATTCTAGCTATCGTGACACTGCAATTCCATGATGTATTAAGAAGCTTCTGGATGGCCTACAATCGCATGGAAGACCTCGTTGAAACGGCACGTTGTTCTGcttctaaacaaaaaaaaagtaagtctgcagtgtttttttcacaactttattgaaaaaacattcaaat
>XR_005639862.1
TGAGAATCGATGCATTATTGATTGCATTTATGCTGTTATATCGTTATTTTGGCCCGTTCGCTCCACATTTAGTGTTCGTTCCACATTTAATATACGTAGCGTCAAAGTAACACCGTAAGGAAGGGGGCAGCATCTCCAACATTGTGATTGAAAACACCAAAAAAGAAGATATTCAGATCAGGAAGACAGCCTCTGGTTGGTCGACACACTCACCTGACAACATTCCGGGAGTCAAGATGGCTGGAGCCAGTAAACAGTGGATTTATGGTTCCTGAATTATTGTTCAAAGTCTCAGAAAAGACACTGCAGTTTCAGACTGGATTAGAAAGCTTCTGGAAGGCCTAGTGGGAGACCTCCCTGGAAAGGGCCAGATTCTAGCTATCGTGACACTGCAATTCCATGATGTATTAAGAAGCTTCTGGATGGCCTACAATCGCATGGAAGACCTCGTTGAAACGGCACGTTGTTCTGcttctaaacaa

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95883 False 389 lncRNA 0.42 2 10748123 10752652
XR_005639862.1 True 482 lncRNA 0.44 2 10752016 10752596

Neighbor

gene id symbol gene type direction distance location
rspo2 rspo2 coding upstream 19002 10662478 ~ 10729121 (+)
eif3ea eif3e,LOC101480544,LOC102302331,LOC100691937 coding upstream 91327 10621192 ~ 10656796 (+)
LOC120561655 tmem74,LOC103359617 coding upstream 229132 10516857 ~ 10518991 (+)
LOC120562578 NA coding upstream 369369 10368865 ~ 10378754 (+)
LOC120562586 LOC104935658,LOC103355652,LOC101471248 coding upstream 390346 10328164 ~ 10357777 (+)
macf1b LOC102795676,LOC102290681,LOC101484559,LOC100704065,LOC104943360 coding downstream 209238 10961890 ~ 11002470 (+)
LOC120561921 LOC104943362,LOC103369138 coding downstream 258328 11010980 ~ 11016582 (+)
LOC120562012 LOC103388795,LOC103359769 coding downstream 846462 11599114 ~ 11616059 (+)
LOC120562594 znf516 coding downstream 968464 11721116 ~ 11768925 (+)
LOC120562168 zadh2,LOC102799231 coding downstream 1218225 11970877 ~ 11975946 (+)
G71741 NA non-coding upstream 3852 10744011 ~ 10744271 (+)
G71738 NA non-coding upstream 129548 10618257 ~ 10618575 (+)
G71723 emc2 non-coding upstream 156717 10580160 ~ 10591406 (+)
G71609 NA non-coding upstream 545532 10201676 ~ 10202591 (+)
G71607 NA non-coding upstream 744430 10003481 ~ 10003693 (+)
G71826 NA non-coding downstream 367267 11119919 ~ 11120208 (+)
G71835 NA non-coding downstream 410044 11162696 ~ 11163045 (+)
G71838 NA non-coding downstream 434470 11187122 ~ 11187358 (+)
LOC120562313 NA non-coding downstream 483642 11236294 ~ 11309852 (+)
G71873 NA non-coding downstream 683819 11436471 ~ 11436699 (+)
G71610 NA other upstream 539926 10207415 ~ 10208197 (+)
trnay-gua_42 NA other upstream 1898403 8849632 ~ 8849720 (+)
trnay-gua_41 NA other upstream 1898786 8849249 ~ 8849337 (+)
trnay-gua_40 NA other upstream 1899552 8848483 ~ 8848571 (+)
trnay-gua_39 NA other upstream 1900642 8847392 ~ 8847481 (+)
LOC120562569 LOC104943359,LOC103359623,LOC101482188,LOC107100615,LOC106961743 other downstream 33002 10785654 ~ 10961130 (+)
G71743 NA other downstream 67643 10820295 ~ 10821500 (+)
depdc1b depdc1b,LOC103388656,LOC101486657 other downstream 714693 11467345 ~ 11482423 (+)
mbpb mbp,LOC104918400 other downstream 784532 11537184 ~ 11599226 (+)
G71896 LOC103388795 other downstream 846385 11599037 ~ 11616242 (+)

Expression


Co-expression Network