depdc1b (depdc1b,LOC103388656,LOC101486657)


Basic Information

Item Value
gene id depdc1b
gene name depdc1b,LOC103388656,LOC101486657
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 11467345 ~ 11482423 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU96042
TACTTTGTCAATGAACATATCAAGGGTTATCTAAGAAAGGGAGTGAATGTGACGTGTTACATAACTGAGATGCTGTAGTAGGGAAAACCCCTACTAGTAaccctttacttgaaggtatctaagGTACATAAAAGTGACATGGCACTCATcccaaaaggatcaataaagagaagtctcATGAAcatatgacactgtcatgacacatgaaccctaactctaaccctaacttggAAAAGTTAAACCTAACCTAATGACAGAAGCattgtcataaatgtttatgacatgttcatgaccgTGTcctgtcactcttatgtagatacctttcaagtaaagtgtaaccaaaaaaacaaatggtccTTCCTCTCTAACCCCCTACTTACCCCATACTTGACTGGTCCTGCTTCATGTGCACTCTTAAAAAGACTCATTTCATGTTTGTACCATA
>XM_039804687.1
ATGGACGGTAAAGTTATCGGAACGGGTCCATACAGGGCGACCAAGCTGTGGAATGAAACCATTAAACTCTTCCGTGGAGGCATGCCGCTGAGAAGGCACTGGGCGCACTTCCGCTACTACGATTGCAGTTTCGCCGGATCCGAGGCTGTGGATTATCTGCATGAGCTGCTGAGGCGCAACTACAACTTTGGCCCCGAGGTGACTCGTTACCAGACTCTGCAGCTGCTCAGGAAGTTCCTCAAGGCCCATGTCATAGAAGACATCAAGGGACGCCATGGGTCAGAGGACTTTGAAGACAACGGCCATCTATACAGGTTCCCCTCCTCGTCCCCCCTCAAGTCTTTTCCAACAAGGCCTCTGTTAAGAGACAGCACTGACCTTCCCAGACTCATTCGCTGGGACGACTACGAAGAATTGCCTCAGCGGGAAAACATTCCACCCCTGAAGTCTGCTGTCATGACCTCAGATTTGTGGAATAAAAGGCACAGTGTGGCTATTGGGGATGTGCATGAATGCAAGCTCATACGAAGGAAGGAGATAACTCCAAAGCAAGTGGACCACATCTGGAAGTCGATGACGGTTGCGCATTTACAGAGAGTGTTGGGCCTAACGTCATTGGATGGAGTTTTAAACCCAACGCATGTGAACGGCAAGCACATTGTTCACAATGTGTTCAGCGTTAATAAGACGGGCATAGTCATATTGGAGAACAAAGCCGAGGACATGCCATATTGGGTGGTATCAGCAATGAAATGCCTCGCCAATTGGCCTAATGGCAATGAAAGCAAACAGCCGGTGTACCCGGGTTTCGAGAGGGATGTTCTGAAAACAGTGGCCGATTACTTTCAGAGACTCAAAGAACCCCTGCTGACTTTCCATCTATATGAAGTCTTTGTCAACATTCTCAGTCTGCTGCAGGAGCAGGAGGTCGCCACTGAGGCTCTTCAATTCAGCTGTCTCTTACTGCCACCGCCCAACCGAAGACGCCTCCAGCTGTTACTGCGTCTCGTGGCCCGGGTCTGCCAGAATCCCCACCTGCCTCCACTCAACGACACCATTGCTACCCGCACACTGATGGTGCAGATGTTCGCGCACTGCGTTCTGGGCTCAGTGGATGAGATGGACCTGGATGAGCTGCTTGCCACCAAATTGGTGACCTTCATGATGGAGCACCACAACACCATCTTCCAAGTTCCTTCCAAGCTGCGTCGCCAGGTCGAGGAGCACCTGTCCCACCTCAAAAGAGTTCAAATCAAATACGCAGGTTCAGACACGGACTTCAGTGCATCTCCAGCATTCTGTAAACAGATCAGCAGGGTGGAGTCCGAGGAGCAGAAGGTGATAGGAACCCAGACCCCCCTGCAGGCGCTGCTGGAAGGCCTGATAGCAGACAAAGAACTGCCTTCcaaggacaagaggaaaaggcTTAAACAGTTCCAGAGGTCCTACCCAGAGGTCTACCGTAATCGATTTCCCACTGAGGAAAGCAAGGCTGCTGTCGTACCTGAGAAAACCCCACGACTCAAACCTCACCTCATGTTTTTCAACCTCAAGAAGCCCTTCCAGCCCTTTCAGAGGAGCTGGAGTTTTAGGGCGTGATCTGCCCCCACTGACACATTTCAGGCTACACTTCAGtctgtaaacacatctcaagGTCAGCGTCGTGAGACTAGGAGCTGGAATGGTGCTCTGCTAACACACGGTTAACAACTTgcaattaatgtttaaaaataacGACTTGGACTTTGTAGCACTgttaaactaaaataataatttagaaGGTCAGTTCACGcaatgataataatattaacaataataataataatggtaataATGGCATTCCCACTGACTCCTCGTCATATCTAGCCAGATAGCTTGATTTAGTTGCAAAACATTACCAACTATTTTCAAACTGCAAACAATGACTGTGGATAGCTGAATTGGCCCTTTGTAACAAATACATGTTTTACTGGGTTGATAGAAAACTTTAACTTAGTATAGGAAACACAGATGCACTGACACTTAAAGAACCACTGATGTTTCTTAAAATGAAATTGTGTATTGGTAAATTTTTCTAAGATATTATGCTAGAAAGATCTTCTAAGCACACATTGGCTCTGTAAATACATTGCATTTCAAAAGTAGGTCATTAGTTGATTAACAATTTTAGGTTGTGAAAAGTTAAtaatagatagatggatggatataatAGTATAGTTTTGTACTATAACAGAAATATTCAGGTGCATTTCTTGGTATTACTTACCCTTCAAACTGATTATGATATTATGAGATGGACTCTTGCAAGGCAACGATGCATTTCATTTTGATGAATACTTGCTGATGGAATGGTCATTATGATCTTGGCAACTCGGAGCCTatccaaaagatgtttttttattttttttttttttttaactttagcaGTTAAACAGTTACTTTGTCAATGAACATATCAAGGGTTATCTAAGAAAGGGAGTGAATGTGACGTGTTACATAACTGAGATGCTGTAGTAGGGAAAACCCCTACTAGTAaccctttacttgaaggtatctaagGTACATAAAAGTGACATGGCACTCATcccaaaaggatcaataaagagaagtctcATGAAcatatgacactgtcatgacacatgaaccctaactctaaccctaacttggAAAAGTTAAACCTAACCTAATGACAGAAGCattgtcataaatgtttatgacatgttcatgaccgTGTcctgtcactcttatgtagatacctttcaagtaaagtgtaaccaaaaaaacaaatggtccTTCCTCTCTAACCCCCTACTTACCCCATACTTGACTGGTCCTGCTTCATGTGCACTCTTAAAAAGACTCATTTCATGTTTGTACCATACTTGTTTTATTGTGTATATAAGAACTCTTGATTGGTACATATTTCAATGTCTCAAATACTCTTCATTCACTGTTTTCAATGTCTTCTTGTCATTTTCTATTCGCTGCTGTTCTGTCATGTcaatcaggttgtttttttacttaattTGAGActtaaattgttgtttttagaaTGATTAAGTGCTTTTATTCCTATATGGATTTTCATTAATGCTCTTGAACAAATGTAATAATGCTGGAATAACTGTTACACTTGAATTGCTGCTCCTTGCTGGGAAAAATCGACTGGTTAATGATGCTGATTTACCTATAAACATTGTAATTGGTAAATGTAA

Function

symbol description
depdc1b Predicted to act upstream of or within intracellular signal transduction. Is expressed in blastoderm; blastodisc; head; and trunk. Orthologous to human DEPDC1B (DEP domain containing 1B).

NR:

description
DEP domain-containing protein 1B

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96042 False 445 lncRNA 0.38 1 11481645 11482089
XM_039804687.1 True 3215 mRNA 0.43 11 11467345 11482423

Neighbor

gene id symbol gene type direction distance location
LOC120561921 LOC104943362,LOC103369138 coding upstream 450763 11010980 ~ 11016582 (+)
macf1b LOC102795676,LOC102290681,LOC101484559,LOC100704065,LOC104943360 coding upstream 464875 10961890 ~ 11002470 (+)
rspo2 rspo2 coding upstream 738224 10662478 ~ 10729121 (+)
eif3ea eif3e,LOC101480544,LOC102302331,LOC100691937 coding upstream 810549 10621192 ~ 10656796 (+)
LOC120561655 tmem74,LOC103359617 coding upstream 948354 10516857 ~ 10518991 (+)
LOC120562012 LOC103388795,LOC103359769 coding downstream 116691 11599114 ~ 11616059 (+)
LOC120562594 znf516 coding downstream 238693 11721116 ~ 11768925 (+)
LOC120562168 zadh2,LOC102799231 coding downstream 488454 11970877 ~ 11975946 (+)
LOC120561949 zhx2,LOC104959811 coding downstream 945118 12427541 ~ 12455916 (+)
tbc1d31 tbc1d31 coding downstream 983526 12465949 ~ 12476564 (+)
G71873 NA non-coding upstream 30646 11436471 ~ 11436699 (+)
LOC120562313 NA non-coding upstream 157493 11236294 ~ 11309852 (+)
G71838 NA non-coding upstream 279987 11187122 ~ 11187358 (+)
G71835 NA non-coding upstream 304300 11162696 ~ 11163045 (+)
G71826 NA non-coding upstream 347137 11119919 ~ 11120208 (+)
G71882 NA non-coding downstream 983 11483406 ~ 11483643 (+)
G71921 NA non-coding downstream 224134 11706557 ~ 11772009 (+)
G71929 NA non-coding downstream 339217 11821640 ~ 11821934 (+)
G71952 NA non-coding downstream 729587 12212010 ~ 12215147 (+)
G71953 NA non-coding downstream 733840 12216263 ~ 12216560 (+)
LOC120562569 LOC104943359,LOC103359623,LOC101482188,LOC107100615,LOC106961743 other upstream 506215 10785654 ~ 10961130 (+)
G71743 NA other upstream 645845 10820295 ~ 10821500 (+)
LOC120561920 LOC106676202,LOC102303534 other upstream 715496 10746008 ~ 10751849 (+)
G71610 NA other upstream 1259148 10207415 ~ 10208197 (+)
trnay-gua_42 NA other upstream 2617625 8849632 ~ 8849720 (+)
mbpb mbp,LOC104918400 other downstream 54761 11537184 ~ 11599226 (+)
G71896 LOC103388795 other downstream 116614 11599037 ~ 11616242 (+)
LOC120561922 NA other downstream 225958 11708381 ~ 11710258 (+)
LOC120563165 scx other downstream 1229179 12711602 ~ 12729226 (+)
LOC120562335 NA other downstream 1278394 12760817 ~ 12773439 (+)

Expression


Co-expression Network