G72204 (ctnnb1,LOC103388302)


Basic Information

Item Value
gene id G72204
gene name ctnnb1,LOC103388302
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13124934 ~ 13125897 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU96452
CCTCCTTTCACATACCCAAGCATTTTAACTAGAGCTGGTATTCCTCCAGACTTGAAAATGGCCAGCAAACCCTCTCTGTGATGGGACAGGTTGTGGAGTGTTCCTGCGGTGCAGCGAGCTGTCTCCACATCATTTGTGTTCTGCATGGTCCTGACAATAGCAGACACCATCTGAGGAGAGCGCATAATGGCGTGGCGAGAAGCTTCTTTCTTTGAAAGCTGGTGGACCATTACTGCTGCTTTGTTTACTACAACCTGGTCCTCATCATTGAGTAGTTTGGTGAGTTCTGGTATGGCTCTGGTTGCCAGCTCAGCGTCATCTTGGTAGTTGATCAGATTGACCACAGCATGTTTGAGCATTTGCGAGGGCTCTGCCAGCCTCTGAACGTTGGTGGGGTTTGCTGCATCATACTGTGTGGAGGGGATCTGCATGCCCTCCTCAAGAGTCTCTGGGAACATCGCTGCACGCACCCGCTGGGCACGTGTCATGGCATACTGACCATCTATGTCTTGTACTTGTTCCTGGGCAAAGTTCTGGTTGAAGCCCTGCTCCCACTCATACATGACCTGGTTGTCGACATCGTCTTCCTCAGGGTTGCCCTTCCCACTAAGGGAGGGAGCGGTTGTGGTGGCCCCTGAATGGATGCCTGAATCCAGGTAAGACTGTTGCTGCCAGTGACTGACTGCTGCCTTACGGTCCGGCTCCATGGCCATGTCGAGCTCCATCAGATCAGCTGGAAAGAGAAAG
>TU96453
CCTCCTTTCACATACCCAAGCATTTTAACTAGAGCTGGTATTCCTCCAGACTTGAAAATGGCCAGCAAACCCTCTCTGTGATGGGACAGGTTGTGGAGTGTTCCTGCGGTGCAGCGAGCTGTCTCCACATCATTTGTGTTCTGCATGGTCCTGACAATAGCAGACACCATCTGAGGAGAGCGCATAATGGCGTGGCGAGAAGCTTCTTTCTTTGAAAGCTGGTGGACCATTACTGCTGCTTTGTTTACTACAACCTGGTCCTCATCATTGAGTAGTTTGGTGAGTTCTGGTATGGCTCTGGTTGCCAGCTCAGCGTCATCTTGGTAGTTGATCAGATTGACCACAGCATGTTTGAGCATTTGCGAGGGCTCTGCCAGCCTCTGAACGTTGGTGGGGTTTGCTGCATCATACTGTGTGGAGGGGATCTGCATGCCCTCCTCAAGAGTCTCTGGGAACATCGCTGCACGCACCCGCTGGGCACGTGTCATGGCATACTGACCATCTATGTCTAGA

Function

symbol description
ctnnb1 Enables cadherin binding activity. Involved in positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification. Acts upstream of or within several processes, including determination of dorsal/ventral asymmetry; ectoderm development; and glomerular filtration. Located in several cellular components, including intercalated disc; microvillus; and zonula adherens. Part of catenin complex. Is expressed in several structures, including EVL; adaxial cell; brain; germ ring; and gonad. Human ortholog(s) of this gene implicated in several diseases, including autosomal dominant non-syndromic intellectual disability 19; exudative vitreoretinopathy 7; hepatocellular carcinoma (multiple); reproductive organ cancer (multiple); and urinary system cancer (multiple). Orthologous to human CTNNB1 (catenin beta 1).

NR:

description
PREDICTED: catenin beta-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96452 True 747 TUCP 0.52 3 13124934 13125897
TU96453 False 513 lncRNA 0.51 2 13124934 13125539

Neighbor

gene id symbol gene type direction distance location
ulk4 ulk4,LOC104943585 coding upstream 24465 12998150 ~ 13100469 (+)
mroh1 NA coding upstream 243531 12851758 ~ 12881403 (+)
ncam3 LOC104959682 coding upstream 276474 12842761 ~ 12848460 (+)
LOC120562667 LOC103369917,LOC102193495,LOC101464842,LOC108232169,LOC101465138,LOC102300261 coding upstream 305800 12808081 ~ 12819134 (+)
LOC120562668 LOC103369917 coding upstream 317318 12802476 ~ 12807616 (+)
cmtm8b cmtm8 coding downstream 85682 13211579 ~ 13215355 (+)
LOC120561555 ncoa7,LOC104938018 coding downstream 113217 13239114 ~ 13243225 (+)
trmt11 trmt11 coding downstream 126800 13252697 ~ 13264092 (+)
rspo3 rspo3,LOC103353817 coding downstream 269541 13395438 ~ 13411921 (+)
LOC120561886 LOC103353818,LOC102295432,LOC102785128,LOC101482972 coding downstream 288427 13414324 ~ 13418452 (+)
G72199 NA non-coding upstream 407 13119637 ~ 13124527 (+)
G72198 NA non-coding upstream 4833 13112215 ~ 13120101 (+)
LOC120562936 NA non-coding upstream 178946 12896310 ~ 12945988 (+)
G72134 NA non-coding upstream 241165 12826651 ~ 12883769 (+)
LOC120563130 NA non-coding upstream 273857 12848475 ~ 12851077 (+)
G72242 NA non-coding downstream 82931 13208828 ~ 13209034 (+)
LOC120562636 NA non-coding downstream 319969 13445866 ~ 13448239 (+)
G72309 NA non-coding downstream 345854 13471751 ~ 13473470 (+)
G72314 NA non-coding downstream 349473 13475370 ~ 13483111 (+)
G72319 NA non-coding downstream 406228 13532125 ~ 13533002 (+)
LOC120562335 NA other upstream 351495 12760817 ~ 12773439 (+)
LOC120563165 scx other upstream 395708 12711602 ~ 12729226 (+)
LOC120561922 NA other upstream 1414676 11708381 ~ 11710258 (+)
G71896 LOC103388795 other upstream 1508692 11599037 ~ 11616242 (+)
mbpb mbp,LOC104918400 other upstream 1525708 11537184 ~ 11599226 (+)
hint3 hint3 other downstream 119771 13245668 ~ 13250110 (+)
prelid3a prelid3a other downstream 342314 13468211 ~ 13471516 (+)
LOC120562530 ext1,LOC103135121 other downstream 433863 13559760 ~ 13606245 (+)
LOC120562711 eif3h other downstream 498551 13624448 ~ 13688514 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other downstream 628156 13754053 ~ 14046136 (+)

Expression


Co-expression Network