prelid3a (prelid3a)


Basic Information

Item Value
gene id prelid3a
gene name prelid3a
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13468211 ~ 13471516 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU96598
CCAGCCGGCTTCTCTCTTGTCCTCTACTGTACGAGCTGTCTGTTCGAATCTCTGAATTACATGTTTTTCCTGTGACGGGGGGATCAGAAGAGCATATTGCGCAGTCTTTACGCAAGGTTGATATGCGAAGAAAAGCAGAGATGCGCTCTCCGGACTCACTTCATTGATGGTCGTGAGCTTCCATCATAGGCCCTGTAACGTTACTATCTGATTACTGGAGCCAGTTCCTCATATGAAAATGGTCCGGTGAAATGTAGTTTCCGATCACGGAAGGGATTCTCAGCGCTAAGGTCAAGACTTGtcttttgaaaaatgaaaatttggAGCACGGAACATGTTTTCAGTTACCCATGGGAGACGGTGATCAAGGCTGCCATGAGGAAGTACCCAAACCCCATGAACACTAATGTGGTCGGGGTGGACGTTCTGGACCGCAGCCTGGATACACAGGGACGCCTGCACAGCCACAGACTCCTCAGCACAGAGTGGGGCCTCCCAGGCATTGTGCGAGCGatactGGGAACCAACCATACGCAGACGTATGTGAAGGAACACTCCATAGTGGACCCAGAGGAGAAAAAGATGGAGCTGTGCTCAACAAATATTACTCTCACCAACCTGATTTCAGTGGATGAGAGGCTTCTTTACAGACCGCACCCAGACAACCCCGAGGTTACCGTCCTGACCCAGGAGGCCATCATCACAGTCAAGGGAGTGAGTCTAAGCAGTTACCTGGAGGGGATGATGGCTAGGAGAATGTCAGCTAACGCCAGGAAGGTAaccagggt
>XM_039805705.1
TTTCCCCGCTGTTGCACCAGCCGGCTTCTCTCTTGTCCTCTACTGTACGAGCTGTCTGTTCGAATCTCTGAATTACATGTTTTTCCTGTGACGGGGGGATCAGAAGAGCATATTGCGCAGTCTTTACGCAAGGTTGATATGCGAAGAAAAGCAGAGATGCGCTCTCCGGACTCACTTCATTGATGGTCGTGAGCTTCCATCATAGGCCCTGTAACGTTACTATCTGATTACTGGAGCCAGTTCCTCATATGAAAATGGTCCGGTGAAATGTAGTTTCCGATCACGGAAGGGATTCTCAGCGCTAAGGTCAAGACTTGtcttttgaaaaatgaaaatttggAGCACGGAACATGTTTTCAGTTACCCATGGGAGACGGTGATCAAGGCTGCCATGAGGAAGTACCCAAACCCCATGAACACTAATGTGGTCGGGGTGGACGTTCTGGACCGCAGCCTGGATACACAGGGACGCCTGCACAGCCACAGACTCCTCAGCACAGAGTGGGGCCTCCCAGGCATTGTGCGAGCGatactGGGAACCAACCATACGCAGACGTATGTGAAGGAACACTCCATAGTGGACCCAGAGGAGAAAAAGATGGAGCTGTGCTCAACAAATATTACTCTCACCAACCTGATTTCAGTGGATGAGAGGCTTCTTTACAGACCGCACCCAGACAACCCCGAGGTTACCGTCCTGACCCAGGAGGCCATCATCACAGTCAAGGGAGTGAGTCTAAGCAGTTACCTGGAGGGGATGATGGCTAGGAGAATGTCAGCTAACGCCAGGAAGGGTTGGGATGCTATTGAGTGGATTATTCAGAACTCTGAAAGCGAGAACATACCTCTGTGACATTTACTAACTCTGGACTGCAGTTCTACAGTGACAACTGCTTTCCCCGCTACACCTCATACGCCACCGGGGGATTCTCAGCGTCTCGGGATCCTCTGCAGTTGGTACTTATATCGCCATGCACTGGAAGCT

Function

symbol description
prelid3a Predicted to enable phosphatidic acid transfer activity. Predicted to be involved in phospholipid transport. Predicted to be active in mitochondrial intermembrane space. Orthologous to human PRELID3A (PRELI domain containing 3A).

NR:

description
PREDICTED: protein slowmo homolog 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96598 False 788 TUCP 0.51 5 13468227 13470450
XM_039805705.1 True 985 mRNA 0.50 7 13468211 13471516

Neighbor

gene id symbol gene type direction distance location
LOC120561886 LOC103353818,LOC102295432,LOC102785128,LOC101482972 coding upstream 49759 13414324 ~ 13418452 (+)
rspo3 rspo3,LOC103353817 coding upstream 56290 13395438 ~ 13411921 (+)
trmt11 trmt11 coding upstream 204119 13252697 ~ 13264092 (+)
LOC120561555 ncoa7,LOC104938018 coding upstream 224986 13239114 ~ 13243225 (+)
cmtm8b cmtm8 coding upstream 252856 13211579 ~ 13215355 (+)
LOC120562882 LOC104926221,LOC103388613,LOC103353832 coding downstream 138102 13609618 ~ 13621344 (+)
zgc:110410 LOC104941306 coding downstream 587124 14058640 ~ 14068948 (+)
LOC120561614 NA coding downstream 1112519 14584035 ~ 14588452 (+)
si:cabz01093077.1 NA coding downstream 1118727 14590243 ~ 14593984 (+)
LOC120561707 NA coding downstream 1129373 14600889 ~ 14603683 (+)
LOC120562636 NA non-coding upstream 19972 13445866 ~ 13448239 (+)
G72242 NA non-coding upstream 259177 13208828 ~ 13209034 (+)
G72199 NA non-coding upstream 343684 13119637 ~ 13124527 (+)
G72198 NA non-coding upstream 348110 13112215 ~ 13120101 (+)
LOC120562936 NA non-coding upstream 522223 12896310 ~ 12945988 (+)
G72309 NA non-coding downstream 235 13471751 ~ 13473470 (+)
G72314 NA non-coding downstream 3854 13475370 ~ 13483111 (+)
G72319 NA non-coding downstream 60609 13532125 ~ 13533002 (+)
LOC120561831 NA non-coding downstream 615087 14086603 ~ 14087796 (+)
G72466 NA non-coding downstream 692020 14163536 ~ 14163744 (+)
hint3 hint3 other upstream 218101 13245668 ~ 13250110 (+)
G72204 ctnnb1,LOC103388302 other upstream 342314 13124934 ~ 13125897 (+)
LOC120562335 NA other upstream 694772 12760817 ~ 12773439 (+)
LOC120563165 scx other upstream 738985 12711602 ~ 12729226 (+)
LOC120561922 NA other upstream 1757953 11708381 ~ 11710258 (+)
LOC120562530 ext1,LOC103135121 other downstream 88244 13559760 ~ 13606245 (+)
LOC120562711 eif3h other downstream 152932 13624448 ~ 13688514 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other downstream 282537 13754053 ~ 14046136 (+)
cmc1 cmc1 other downstream 662068 14133584 ~ 14144296 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other downstream 704301 14175817 ~ 14370091 (+)

Expression


Co-expression Network