LOC120562530 (ext1,LOC103135121)


Basic Information

Item Value
gene id LOC120562530
gene name ext1,LOC103135121
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13559760 ~ 13606245 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU96607
tgtatgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaaggggtaCTGCATGGTATTTTTCACTTCTGAGAATGTGCTATCAGCTCGAGAGCAAATAAACGGTCCTATCAAGACAACTGAAGACGGTCATAAACAGAATCACATTTTAGAAATGAACTTGGTGCAATATTTAAGATGACATTTTCTCtatctttttctcttctccttcATTATGTTGTTTCAGAGGGCAGGGGTTATATATTGATGTGCCTTCAGAAGAAATACACgtattaggtttttttttttctcatctgcCTTGTGCAAGAAACAGGTCCCTGTTTTCATTTCatagtagttttttttatttatttattttttcgttCTTTATCAATATTCACAGAATGACTCCCTAAATGATCTTGTTTAACACTGGAATGCTACTAAGACTTATCACCACACATCTGATACTGACATTCCTGCCTTTTCTCTTGtaggaaccttttttttttttttttttttacgtactGCCTTGTATTACTATATTTGCAAGGGGCCATTAGAGGGCCCCTTCTCCTGGTTGTCACAATTATAGTAATACATGTAACACACAAATAATTCTCTCATACACAGTATTTATCAGACAGGATTGTGTCCCGGCTGAATCTCTGCCtgcttccttccctctcttctgtAACTGCAGACCTAATTTTATAGAGATTAAAATGGAAAgatagaggggaaaaaaaaatcacaattttgtaaaataagtttataaaaaacaaaaaaaacaataaagaaaatgtttgatATAAAatta
>XM_039806252.1
TCTGGTGGGACTGCCGCTGCCGTCTCTCCCCGCTTGGCTTGCAGTCTCCACAGCACCTCTTGTTTTTGTGCGTGAGCCACCACTTAAACACTTTACACGACTGGAGACATTTACGGATAAATTATCCTGTCTGCTTTGTGTAAGGAGCTAAGGACAAGTTGTGGATAAATGAAGAGACATTGTTTTTAGAGGAAGAAGACCGACTGCTTGCCCGTCTTTACTTCCAACCAGCGTTAAAGCTACTTTGATGTAACCGCTTAGCTTACAAGCTAACTGggaatgttttcagaaactagCCTGTCTGTTAgcgtgctagctagctaaatcgGATGGAGAAATTCTCTGTATAGATTTAGCAAACAGTTATAGTTATCTTTCGGTACCATAGTTGTTCGGTACAACAACTATGGCAACGTCTCAAACTGGGTATGTTGGATGTTTAGGGATTCAGTGCCCACTTGGTTGCTAAAATCAGTAGGGACAATAGTTATTAACTGTTCAGGCAACAAGTCTGGCACGCACTGCTGCTTTAACGTTACTCAAGTTTTTACTCATTGTGCAATGTTGTTATTAGTTACCGTTTGGTTCTAGTTAGTTAAACATGAGCACTCTGTGGTGAAAATGAGCGTTTTTTGCAAAGTAGTATAGGTAATGTTATTCAAAGAAAAGTAGGGTGCCACTTTAATGTGAGATCCTCATTTTTAAGTAGATCGGGTCACTCTGTTGTATAGGATAAACTGATGTCAGTTAGTCGATACAACTATTGACGAGGAGGCGAGGTGGATGCACATTATAAATCGCCCACATGCTTTGGATCAGTTCCCGGACTTGTGAAAGGCATCTGAAGCAGAAGGTGGGAGACGTGAGCGCACAACCCTTGCAGCCCAGGGGAAGATGGCGGAGCGTTCCCGCAGGAGGtggtgaaaccaaaacttgggGACTTCTTGGATTTATCGCCAGTTATCTTATCCCAGATCGTAGGACACATGCAGGCCAAAAAACGGTACTTAACTCTGTTCTCCGCCGGTGCTTGTCTcattctgttgttttgttttggagGGATACAAGTCCCGCTATCCAGAAAGGGTCCCAGCCGGCGTGATGACCGTAGTCTCGCCGGTTATCATCCCGGGGCGCGGTGGCGTCGCTTCTCGGCGTCCCTGCAGCCTTTCAGCCCCTGGGAGCATGACCAGAGCGATAGTCACAATGAACACATATCTCCCAGACAGAAGAGGGACGCTAACTCAGGCGTTTACACTGGAAAACGCTGCAGAATGGAGTCCTGCTTTGATTTCTCCCTGTGTCAGAGGAATGGATTTAAAGTTTACGTCTACCCCCAGCAGAAAGGGGAGAAGATGTCCGAGAGTTATCAGAACATATTATCCTCTATCGAAGGATCCATGTTATATACACCTGACCCAGGACAGGCATGCCTGTTTGTCCTGAGTTTGGACACTCTGGACCGGGACCAGCTTTCACCCCAGTATGTACACAATTTGAAAGCAAAAGTCCAGAGCCTTCATCTGTGGAATGGGGGCAAAAACCACATCATATTCAACTTATACTCCGGCACCTGGCCAGACTACACAGAAGACCTTGGCTTTGACATCGGCCTCGCCATGTTGGCCAAGGCCAGCATCAGCACTGAGAACTTTAGGCCCAACTTTGACGTTTCTATCCCTCTTTTCTCTAAAGACCACCCTAGGACAGGAGGGGAAAGGGGCTACCTGAAACATAACACCATTCCCCCTTATAGAAAGTACATGCTTGTTTTTAAGGGGAAGAGGTACCTCACAGGAATAGGTTCAGACACTAGGAATGCTTTATATCACGTCCATAACTCAGAGGATGTGGTCCTCCTCACCACCTGTAAGCATGGGAAGGACTGGCAGAAGCACAAAGACGCACGCTGTGATAAAGACAACGCAGAGTATGACAAGTATGACTACAGAGAGATGCTGTACAACTCGACGTTCTGTCTGGTACCTCGAGGACGACGGCTGGGTTCTTTTCGCTTCTTAGAGGCTTTGCAGGCAGCTTGTGTGCCAGTGATGCTAAGTAATGGCTGGGAGCTGCCCTTCTCAGAAATCATCGACTGGAATACGGCAGCCGTGATTGGGGATGAAAGGCTGCTATTACAGATCCCCTCAACAGTGCGCTCCATCCACCAGGATAAGATCCTGTCCCTTAGACACCAGACCCAGTTCCTATGGGAGGCTTATTTCAACTCTGTGGAAAAGATAGTACTGACCACATTGGAGATCATCCAGGACCGGGTAGTGCAGCATACCTCGAGGAGTAACCTCATGTGGAACAGTCTGCCTGGAGGCCTTTTCACCCTGCCTCAGTACTCCACATACCTGGGAGACTTCCCCTTCTACTATGCTAAGCTGGGTGTCAAACCATACACCAAGTTTACAGCGATCGTTCATGTGGTGAGCCCACTGGTCTCCCAGTCCCAGCCAGTCATGAAGCTGCTCGTGGTTGTGGCCAAATCCCAGTACTGTGCTCAGGTGATAGTTGTGTGGAACTGTGACAAGCCTCTTCCTGCAAAGCACCGCTGGCCTGTCACCTCAGTCCCTGTCATTGTTATAGAAGGCGAAAGCAAGGTGATAAGCAGTCGTTTCCTGCCCTACGAGACCATCCCCACTGATGCTGTACTCAGTCTGGATGAGGACACTGTGCTCTCCACCACGGAGGTGGACTTTGCCTTCACAGTGTGGCAGAGTTTCCCAGACCGCATTGTTGGTTACCCAGCCCGCAGTCACTTCTGGGACAGCAACAAGGAGCGTTGGGGCTACACTTCCAAATGGACCAATGAATATTCCATGGTGCTGACTGGGGCTGCCATCTATCACAAATACTACCACTATTTGTACACCACCTACCTTCCAGCCAGTCTGAAGACCATGGTTGACCAGATGTCAAACTGCGAGGACATTCTGATGAATTTTCTGGTGTCCTCTGTGTCCAAACTACCACCCATCAAAGTCACCCAGAAGAAACAATACAAGGAGACCATGATGGGACAGaGCTCCCGGGCGTCTCGCTGGGCTGACCCCGACCATTTTGCCCAGCGTCAGACCTGCATGAACAAGTTTGCCAGCTGGTTTGGCACCATGCCCCTGGTCCATTCTCAGATGAGGCTGGACCCAGTCCTGTTCAAAGACCAGGTGTCCATACTTCGGAAGAAGTACAGGGACATCGAGAGGCTATAACCCTCCAAAGCCCCCCCGCTCTCTGGACACAACACACCGAGCGAGGGGGCGGACACATAGAGAAACGCAGAGCCTTTTCACGATTGCATGGCCGGATCGATGGAGAAGCAAATAGGATCGGGtacagggagagaggaggaaaaagaaacTGGAACAGATGTGGAGGACACCACATTCATTGGTCTCCTCCGTGTTCATTTCTCCCGTCTACCCTTTCTCTTATGTGTATTGGGCGATTGCTGAGCACACAGGTCCCACTATAcggtatatacacacacatatgactACCACCAACTGAAGGACACCTGAGGACTTTCAAACTGCTCCACTTTAAACTGaagtggttaaagtcatggagTTGGAAATCCTAGCTCGCTGCTTCTGTGTCCCAACAGTGGCTAACCACTCCCAACTCCAACCTGTCTGTTCTGCTCTGTACACTCTGCACAGGTCCATGACAGTTTTTGATGACAGAATAGTATTGATAATTATGACTGAAGAAGATAACACTATTTTGGGATTGTGTGTaggtattttatatatatacagtgaatGAATGGCCAGCACTACTCTTATCTGTATTGTCTTAATTAAAAACCAATAGCAGGGTGGGTGATGAGAGGAATGACAACCCCTCGACCACAGAACTGAGTTCTGATTGTTGATCTGATATTCACAGTGCCTCATGTTTATCTAGTGGCGTTGGGATCTTGGAGTCTGAGAAAAAGACATGGTGCAGAATGAGCACCTTGATCTagctgctttcttttttttttcttttcataattTGCTTAATGATTGATGGGATAATGGATCTTGTAGTGAATTCTTCAGGTCAGCATTCACATTTTTTTCCTCGCTGAAGTATAATGAAAATGATTTGTATTCAATTGACAAACAAAATAATCGTGCCATTCTGAACACGTTCCTGGTAAAACTACAACAGTGTCGCACAACTAGCTAGAGGTTACTAAATTTGCTATGTGGGAATAGGTATCCACAGGAACTGAATAGACATGCAGACAACGTTCAATGGAATTCTCTATTTTCATTTAAGCAAAAGTCTTGTtcgtgtctttttttttttcttccatttgtAAAGGCGTATATGACAAGTTACGATTGGTACTTGTATGCTGTCCCGAAGAACAATAGAAGATCGCAAGAGTTGCCTTGGTTAAGGTAGTCAAGCAACGGTCTGTTTGAAACACAAACCCCTGTGAAATCTAGGGATCTTTTAGGCTTGGTTAGCAAAGGATATTTAAATATGGCTATTGTCTTTTATGCCATGGACCCAATTTCATTTTGTCCAGTGACAAGTTTAGCAGTAGGCTGACTTGGCATGGGCTAACACTGCTTTCATCTAGGAGCATCATATAGTCTAGTGCTTGATGCTTACAGAGTCAGAGTTGGCATCATACTAAATTGACTACTGTATTTTCCCCACTTGTTATGAACAAATATGACCAGATTGACAAGAATTTTCACCAAGCCTTTGTGACACTGTTAAATGGCGTAGGGAAAACCTATGGAGATATGCGCTATGAAGTTAATTATCTCTCATTTGTGGTATTGCTTCAACATAAATGCGTGTAATTTGAAGCCTTGCAATGTCCAGTATATGTGCAGAATGGCAATTTGTATCTCTGATAATCACAGATTTAATTCATGTCATTGATTATTTCATTCATCTCTGAGAGATATAGATTGGCAATGTGCTATTGTGCTCTGGCCAGATTCACAAGGCAACATTTAAAACCACATTAGGTTCATGTTCCATGAATTTAGTTTGATCAGTTTCTATATGCTAGTCTTCTTAATCTGAGACTTGCATCTCTTTTACTGTTAATTGGTACATTGAAAGTGTCAGTGGAAcatgaaattgttttttttttcccagatgGCTCACTAGGCTAATTTACTTAAACAATTTCTAAATGTTTGGTTTCATTAACAATCACAgcttcatttatttttctgccTCGATATGTCATATCAGGTTATCTGAAAAATGTTAACAGAATTTGAtgaatttagtttttaaatcaCAGTGCATCTGTCTATGAAATATCCCTGTAAAGCCAGCAACTTTTCGTTAGAAATCTAACCACACCGGCCCTGACACCTCCTTTGGTAGCGTCAGCTTTATGTTTGAGGAAGATAAATTATCATTTTGGGAAGGCTTTACTGTTCTGTACCCTTCACCACAATATGTGCCAATAGATCATATATGTTTttgcttttgtattttttttttccatctgatACAAGGAATGTCATGCATTCACATTTATATTTGGTTCATTAAAAGCATGTCATCTctatataaaaaagtaaaatgtgtaagaaagagagggggaggggagaaaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagaaggggtaCTGCATGGTATTTTTCACTTCTGAGAATGTGCTATCAGCTCGAGAGCAAATAAACGGTCCTATCAAGACAACTGAAGACGGTCATAAACAGAATCACATTTTAGAAATGAACTTGGTGCAATATTTAAGATGACATTTTCTCtatctttttctcttctccttcATTATGTTGTTTCAGAGGGCAGGGGTTATATATTGATGTGCCTTCAGAAGAAATACACgtattaggtttttttttttctcatctgcCTTGTGCAAGAAACAGGTCCCTGTTTTCATTTCatagtagttttttttatttatttattttttcgttCTTTATCAATATTCACAGAATGACTCCCTAAATGATCTTGTTTAACACTGGAATGCTACTAAGACTTATCACCACACATCTGATACTGACATTCCTGCCTTTTCTCTTGtaggaaccttttttttttttttttttttacgtactGCCTTGTATTACTATATTTGCAAGGGGCCATTAGAGGGCCCCTTCTCCTGGTTGTCACAATTATAGTAATACATGTAACACACAAATAATTCTCTCATACACAGTATTTATCAGACAGGATTGTGTCCCGGCTGAATCTCTGCCtgcttccttccctctcttctgtAACTGCAGACCTAATTTTATAGAGATTAAAATGGAAAgatagagggg

Function

symbol description
ext1 Enables UDP-glycosyltransferase activity and protein dimerization activity. Involved in glycosaminoglycan biosynthetic process; heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process; and ossification. Located in Golgi apparatus and endoplasmic reticulum. Implicated in chondrosarcoma; hereditary multiple exostoses; and trichorhinophalangeal syndrome type II. Biomarker of chondrosarcoma.

NR:

description
PREDICTED: exostosin-1

GO: NA

KEGG:

id description
K02366 EXT1; glucuronyl/N-acetylglucosaminyl transferase EXT1

RNA

RNA id representative length rna type GC content exon number start site end site
TU96607 False 855 lncRNA 0.35 2 13559760 13606245
XM_039806252.1 True 6348 mRNA 0.44 11 13566151 13606167

Neighbor

gene id symbol gene type direction distance location
LOC120561886 LOC103353818,LOC102295432,LOC102785128,LOC101482972 coding upstream 141308 13414324 ~ 13418452 (+)
rspo3 rspo3,LOC103353817 coding upstream 147839 13395438 ~ 13411921 (+)
trmt11 trmt11 coding upstream 295668 13252697 ~ 13264092 (+)
LOC120561555 ncoa7,LOC104938018 coding upstream 316535 13239114 ~ 13243225 (+)
cmtm8b cmtm8 coding upstream 344405 13211579 ~ 13215355 (+)
LOC120562882 LOC104926221,LOC103388613,LOC103353832 coding downstream 3373 13609618 ~ 13621344 (+)
zgc:110410 LOC104941306 coding downstream 452395 14058640 ~ 14068948 (+)
LOC120561614 NA coding downstream 977790 14584035 ~ 14588452 (+)
si:cabz01093077.1 NA coding downstream 983998 14590243 ~ 14593984 (+)
LOC120561707 NA coding downstream 994644 14600889 ~ 14603683 (+)
G72319 NA non-coding upstream 26758 13532125 ~ 13533002 (+)
G72314 NA non-coding upstream 76649 13475370 ~ 13483111 (+)
G72309 NA non-coding upstream 86290 13471751 ~ 13473470 (+)
LOC120562636 NA non-coding upstream 111521 13445866 ~ 13448239 (+)
G72242 NA non-coding upstream 350726 13208828 ~ 13209034 (+)
LOC120561831 NA non-coding downstream 480358 14086603 ~ 14087796 (+)
G72466 NA non-coding downstream 557291 14163536 ~ 14163744 (+)
G72520 NA non-coding downstream 908422 14514667 ~ 14517897 (+)
G72551 NA non-coding downstream 997739 14603984 ~ 14604638 (+)
G72559 NA non-coding downstream 1026835 14633080 ~ 14633375 (+)
prelid3a prelid3a other upstream 88244 13468211 ~ 13471516 (+)
hint3 hint3 other upstream 309650 13245668 ~ 13250110 (+)
G72204 ctnnb1,LOC103388302 other upstream 433863 13124934 ~ 13125897 (+)
LOC120562335 NA other upstream 786321 12760817 ~ 12773439 (+)
LOC120563165 scx other upstream 830534 12711602 ~ 12729226 (+)
LOC120562711 eif3h other downstream 18203 13624448 ~ 13688514 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other downstream 147808 13754053 ~ 14046136 (+)
cmc1 cmc1 other downstream 527339 14133584 ~ 14144296 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other downstream 569572 14175817 ~ 14370091 (+)
G72506 NA other downstream 819549 14425794 ~ 14426180 (+)

Expression


Co-expression Network