cmc1 (cmc1)


Basic Information

Item Value
gene id cmc1
gene name cmc1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14133584 ~ 14144296 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU96779
AAGTATTTTGAATGTACGTAAGCTACTGTAGGTCACATTTGTTTTGAGACACATTACCACAATGGAGGCAGCTAGCACAGGAGATCCAACTGAGGCATGTGGAGAAAGATGTCCTTATCCCCAAAATGATGAGGGAGAAAGCCAAGGAGCGCTGTGCTCAGAAAGTTGAAGCCTTCAACCACTGCTGTAAAGAGACTGGTTTCTTAATGGTGTTTAAGTGTCGAGAGGAGAATGCAGCACTGAAGGAATGTCTGACAATACACTACAAGGACCCTGCGTTCTTCGAGCTGTGTAAGCAGGAGTACATCCAAGAGAAGCTGGAGTTTGAGAGGACAGGGGTCCCAACAAAGAACAGGAAACAAAAAGTCCCAACTAGCATGTAATGAATGACACGACACCCAAACAACTTCCCTGGTGCAGAGTGTGAGCCAGAACCAGCACCAATTCCTACAGACCCAGAACACATGGTCATCTGGCAGGGCTTATAAATTTTAAAGGCACAAGCCTgtgtatttaatttaaatatgtgGAGTGACTAAAACTGGTTTGGTGTGCAAGAGTggaatataatttaaaaaagtctATTTTTTGGTTCTGTATATTTGCAAAATGTTCTCCATCAGATGGCCAACATGATCTTCTTATCAGCATTTGCATTACATTTACCAATGAGCTTATTGATTGATAGAATATGTTGATCTGATCATACAGTCCCCTCCTGTACCTAAAGCCAGAAGATCTTCTTTAGAGTGCAGAGCTTTAGCTTCAGATGTGTACGATCAAATTGAGGGATGTTCAATATCTGCTGaacactttgttgtgtctgtgtgtctttggtaATGAAGAGTCCTGTTTGTTGCCTTTGCTTGGGCCAACAGTTCTGGTAAATCATCTGCACAAGAAAGTAGAAGGCCTCCtttaacaaatttttttttccaagagaCACTCATGCACTATATGTACGAGAGCTCTGACTAAGCAATGAACCATGTGTGGTAATGTGACATATGCAATGAATTGTGACattgtaaataaaaatattcagTAGCAGTAC
>XM_039805546.1
TCTTACGCTGCCTAACTGCGTCAGCGGAAGTATTTTGAATGTACGTAAGCTACTGTAGGTCACATTTGTTTTGAGACACATTACCACAATGGAGGCAGCTAGCACAGAGGAGATCCAACTGAGGCATGTGGAGAAAGATGTCCTTATCCCCAAAATGATGAGGGAGAAAGCCAAGGAGCGCTGTGCTCAGAAAGTTGAAGCCTTCAACCACTGCTGTAAAGAGACTGGTTTCTTAATGGTGTTTAAGTGTCGAGAGGAGAATGCAGCACTGAAGGAATGTCTGACAATACACTACAAGGACCCTGCGTTCTTCGAGCTGTGTAAGCAGGAGTACATCCAAGAGAAGCTGGAGTTTGAGAGGACAGGGGTCCCAACAAAGAACAGGAAACAAAAAGTCCCAACTAGCATGTAATGAATGACACGACACCCAAACAACTTCCCTGGTGCAGAGTGTGAGCCAGAACCAGCACCAATTCCTACAGACCCAGAACACATGGTCATCTGGCAGGGCTTATAAATTTTAAAGGCACAAGCCTgtgtatttaatttaaatatgtgGAGTGACTAAAACTGGTTTGGTGTGCAAGAGTggaatataatttaaaaaagtctATTTTTTGGTTCTGTATATTTGCAAAATGTTCTCCATCAGATGGCCAACATGATCTTCTTATCAGCATTTGCATTACATTTACCAATGAGCTTATTGATTGATAGAATATGTTGATCTGATCATACAGTCCCCTCCTGTACCTAAAGCCAGAAGATCTTCTTTAGAGTGCAGAGCTTTAGCTTCAGATGTGTACGATCAAATTGAGGGATGTTCAATATCTGCTGaacactttgttgtgtctgtgtgtctttggtaATGAAGAGTCCTGTTTGTTGCCTTTGCTTGGGCCAACAGTTCTGGTAAATCATCTGCACAAGAAAGTAGAAGGCCTCCtttaacaaatttttttttccaagagaCACTCATGCACTATATGTACGAGAGCTCTGACTAAGCAATGAACCATGTGTGGTAATGTGACATATGCAATGAATTGTGACattgtaaataaaaatattcagTAGCAGTA

Function

symbol description
cmc1 Predicted to be active in mitochondrion. Orthologous to human CMC1 (C-X9-C motif containing 1).

NR:

description
COX assembly mitochondrial protein homolog

GO: NA

KEGG:

id description
K18171 CMC1; COX assembly mitochondrial protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU96779 False 1054 TUCP 0.41 4 14133611 14144296
XM_039805546.1 True 1082 mRNA 0.41 4 14133584 14144295

Neighbor

gene id symbol gene type direction distance location
zgc:110410 LOC104941306 coding upstream 64636 14058640 ~ 14068948 (+)
LOC120562882 LOC104926221,LOC103388613,LOC103353832 coding upstream 512240 13609618 ~ 13621344 (+)
LOC120561886 LOC103353818,LOC102295432,LOC102785128,LOC101482972 coding upstream 715132 13414324 ~ 13418452 (+)
rspo3 rspo3,LOC103353817 coding upstream 721663 13395438 ~ 13411921 (+)
trmt11 trmt11 coding upstream 869492 13252697 ~ 13264092 (+)
LOC120561614 NA coding downstream 439739 14584035 ~ 14588452 (+)
si:cabz01093077.1 NA coding downstream 445947 14590243 ~ 14593984 (+)
LOC120561707 NA coding downstream 456593 14600889 ~ 14603683 (+)
LOC120561930 NA coding downstream 459656 14603952 ~ 14607904 (+)
LOC120561617 NA coding downstream 467616 14611912 ~ 14619881 (+)
LOC120561831 NA non-coding upstream 45788 14086603 ~ 14087796 (+)
G72319 NA non-coding upstream 600582 13532125 ~ 13533002 (+)
G72314 NA non-coding upstream 650473 13475370 ~ 13483111 (+)
G72309 NA non-coding upstream 660114 13471751 ~ 13473470 (+)
LOC120562636 NA non-coding upstream 685345 13445866 ~ 13448239 (+)
G72466 NA non-coding downstream 19240 14163536 ~ 14163744 (+)
G72520 NA non-coding downstream 370371 14514667 ~ 14517897 (+)
G72551 NA non-coding downstream 459688 14603984 ~ 14604638 (+)
G72559 NA non-coding downstream 488784 14633080 ~ 14633375 (+)
G72560 NA non-coding downstream 489881 14634177 ~ 14635023 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other upstream 87448 13754053 ~ 14046136 (+)
LOC120562711 eif3h other upstream 445070 13624448 ~ 13688514 (+)
LOC120562530 ext1,LOC103135121 other upstream 527339 13559760 ~ 13606245 (+)
prelid3a prelid3a other upstream 662068 13468211 ~ 13471516 (+)
hint3 hint3 other upstream 883474 13245668 ~ 13250110 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other downstream 31521 14175817 ~ 14370091 (+)
G72506 NA other downstream 281498 14425794 ~ 14426180 (+)
LOC120561718 LOC107101581 other downstream 482182 14626478 ~ 14632721 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other downstream 1409168 15553464 ~ 15560292 (+)
G72750 LOC104952694,LOC106925895 other downstream 1874063 16018359 ~ 16072201 (+)

Expression


Co-expression Network