LOC120561718 (LOC107101581)


Basic Information

Item Value
gene id LOC120561718
gene name LOC107101581
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14626478 ~ 14632721 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU96917
ctcaatcattcccaatcttgcagacgGAGAACGTCTACATACTCCAAAGgaaGCTCGCCATGGCTACAACCATCCCTGCTGTTGTTGCTTTCAGTGGAATAAATACAAATCCAAAAGACTTACCAAGATCTACTACAGCACCCTTCACTAGTAGCATCACTGTAAGCTTCCCAGAATACTACAGTTACTATGACTACCCTGAGGGTGACTTCGGGAGGTGTGTGTATGAGCGGTATGGGGCCAATTTTATTCCCACCCTCTACGCCAGTTTCTTCCTCCTGGGCCTTCTGGGTAACTCTTTGGTCATCTGGGTCATTGCTTGTGGCGTGCGACTCCGCAGCATGACCGACGTGTGCCTCCTAAACTTGGCTGTTGCTGACCTTCTCTTGGTGTGTACCCTTCCCTTCCTTGCCCACCAAGCCCGGGACCAGTGGCTGTTTGGGGATGC
>XM_039804932.1
ctcaatcattcccaatcttgcagacgGAGAACGTCTACATACTCCAAAGgaaGCTCGCCATGGCTACAACCATCCCTGCTGTTGTTGCTTTCAGTGGAATAAATACAAATCCAAAAGACTTACCAAGATCTACTACAGCACCCTTCACTAGTAGCATCACTGTAAGCTTCCCAGAATACTACAGTTACTATGACTACCCTGAGGGTGACTTCGGGAGGTGTGTGTATGAGCGGTATGGGGCCAATTTTATTCCCACCCTCTACGCCAGTTTCTTCCTCCTGGGCCTTCTGGGTAACTCTTTGGTCATCTGGGTCATTGCTTGTGGCGTGCGACTCCGCAGCATGACCGACGTGTGCCTCCTAAACTTGGCTGTTGCTGACCTTCTCTTGGTGTGTACCCTTCCCTTCCTTGCCCACCAAGCCCGGGACCAGTGGCTGTTTGGGGATGCTATGTGCAAAGTGGTCCTTGGTATTTATAATATAGTTTTTTACAGTAGGATCTTCTTCATCACTCTAATGAGCATTGACCGGTACTTGGCTATAGTACAGGCCATTTACGCTATGAGAGTACGGACAAAGTCCTTTGGAATGATCGCAGCGGCTGTTACATGGGTGGCTGGATTTTTGGCTTCTTTCCCTGAAATGATCTTCCTCAAAGAGCAGCCTGGTGTGAATACTAATATGACTCAGTTTTTCTGCTACCCTGTATATCCCACAGCAACTTCGAATGATGCCACCACTTCATCCAACTCTCACATCTGGAGCATCTTcagcctttttaaaatgaactttttggGTCTATTTGTCCCGGTAGTCATCATGGGTTTCTGCTACTCACAGATTGTCTGGAGGCTGCTGCACAGCCCGTCATCCAAGAAACAAGCCATCCGTTTAGTGCTCATAGTGGTAGTTGTTTTCTTCTGCTGCTGGATCCCCTACAACATTGCATCCTTCTTCAAAGCACTGGAGCTATTGCACATCTATACAGAATGTGAAAGCAGCAAAGCCATCAGATTGGCTTTACAAGTCACTGAGGTCATTGCCTACTCTCACAGCTGCCTCAACCCCAtcctgtatgtgtttgttgggGAGAAGTTCAGGAGGCACCTGCTAAGGTTGATAAACAGGGCTCCCTGCAGGCTGTGTCAGATGGTCAAAGCCTGCATACCCCAGGACAGAATCAATGGGTCAGTCTACTCACAGACCACCAGCCTGGGCGAGAGGAGCACTGCTGTGTAAAGTGTGTTCCATAGACGGTATAAAGGTGGGTTgttatttctgtctgtgtggtcATCTCCACAATGAGGGAATTTCTTGTGAAGTCAAATAGTCAAGTTGAGAAACAATTCTTGCTAATTCTGACTTCTTATGGGCTATTTTAGGACTTCAGTTCATTTTTCACTCACAATTGGCTTTAGGTTGATTTTGAGTTTTGGAAATGTAAGAATATAACAAAATACATGTGACAATGTGAGACACAAGCCTGAATCTTAAATCCTATGGTATGATTTTGTAATAGAGTAACATGCCAACACAGTGTACCCGTGTATAAATGTAAAGGTATATATCTTTATACTTTTATAAGTTCTATAGACTACATAAGAATGTACAATggaaatgtactgtaaatatggTTCCGGATAGACAAGATCTTTAACAGAGTTGATGAAGCAGATTGTATCTGCAATTTTAAAGGTCAGAAATAGtcctgaaatacattttttcttctctttttttagaGAGACAAACTCAGATGCTGACCAGTTCCTTGCATTCAGTCAGGCCAAAACACCATTAAGAGAAGTGAAACAAATAGCtaatagctaaaaaaaaaagtgcagctgGAAACCTAAGTATTGTAAGTTTCAAAGCATCTGTAATAGCAGATGTGCACCTCACCTCAACCTAGAGAAAACCACAACATGATAGAAGCGGAAGTATATGTTATCAGTTTAATCTTTGCAGTCTCTGTGCACAAATTAGCATTTTGCTGTCAAATTTTGGAAATATCTCTGCAAAATTTCTAATGAGATTAATCAGCacttcaccaaaacaagtcatTTTCAAATCATTATACTCTATATTCTATCATGCAGACTGACTAGCCATGTGAATAATATGCATACCATATCTTAACTGCAACATCCTTGGTTTCATTCAAGTTGACCACCTTTGTTGCACGtcatcccctcctcctcccctcccccccccctctctcaagGCATTTTCTTACTGTAGCCCACATAATggcaaaatgccaaaaataatgaagtgaaaaaaaactCAGAGCCAAGACATGCAACTGTTTTCACACCCTACGGTCTAACCTTCAGTAATAAACTGACTTTGACATGTAAAATTGGTGAAGTGCCCCTTTAAAAGTACACATTCTCATTAATGACAGTAGTATACTGGTCGAAAACCCACCTGAATTTACGGAGTGGCCCCTAAATGCTAGTGCAGTCAGTAAGGCAAACCATCATTTCTAGGTGGGGCAGTTTCAAAATTTTCATTGGCTAAATTTAGAACTGCAAAAATGAATCAATTTGTTGTCAACTGTTACAGTAATCACCACCTATTTGATTTCAGcatctgcacgtagcctagttgggcctactgtaggtttggtgtataaatgtagtatattaaaatgcaattaggtcgagcagacagtccgaaacattgtAAGCTCGCCTCGCCGacaact
>XM_039804933.1
ctcaatcattcccaatcttgcagacgGAGAACGTCTACATACTCCAAAGgaaGCTCGCCATGGCTACAACCATCCCTGCTGTTGTTGCTTTCAGTGGAATAAATACAAATCCAAAAGACTTACCAAGATCTACTACAGCACCCTTCACTAGTAGCATCACTGTAAGCTTCCCAGAATACTACAGTTACTATGACTACCCTGAGGGTGACTTCGGGAGGTGTGTGTATGAGCGGTATGGGGCCAATTTTATTCCCACCCTCTACGCCAGTTTCTTCCTCCTGGGCCTTCTGGGTAACTCTTTGGTCATCTGGGTCATTGCTTGTGGCGTGCGACTCCGCAGCATGACCGACGTGTGCCTCCTAAACTTGGCTGTTGCTGACCTTCTCTTGGTGTGTACCCTTCCCTTCCTTGCCCACCAAGCCCGGGACCAGTGGCTGTTTGGGGATGCTATGTGCAAAGTGGTCCTTGGTATTTATAATATAGTTTTTTACAGTAGGATCTTCTTCATCACTCTAATGAGCATTGACCGGTACTTGGCTATAGTACAGGCCATTTACGCTATGAGAGTACGGACAAAGTCCTTTGGAATGATCGCAGCGGCTGTTACATGGGTGGCTGGATTTTTGGCTTCTTTCCCTGAAATGATCTTCCTCAAAGAGCAGCCTGGTGTGAATACTAATATGACTCAGTTTTTCTGCTACCCTGTATATCCCACAGCAACTTCGAATGATGCCACCACTTCATCCAACTCTCACATCTGGAGCATCTTcagcctttttaaaatgaactttttggGTCTATTTGTCCCGGTAGTCATCATGGGTTTCTGCTACTCACAGATTGTCTGGAGGCTGCTGCACAGCCCGTCATCCAAGAAACAAGCCATCCGTTTAGTGCTCATAGTGGTAGTTGTTTTCTTCTGCTGCTGGATCCCCTACAACATTGCATCCTTCTTCAAAGCACTGGAGCTATTGCACATCTATACAGAATGTGAAAGCAGCAAAGCCATCAGATTGGCTTTACAAGTCACTGAGGTCATTGCCTACTCTCACAGCTGCCTCAACCCCAtcctgtatgtgtttgttgggGAGAAGTTCAGGAGGCACCTGCTAAGGTTGATAAACAGGGCTCCCTGCAGGCTGTGTCAGATGGTCAAAGCCTGCATACCCCAGGACAGAATCAATGGGTCAGTCTACTCACAGACCACCAGCCTGGGCGAGAGGAGCACTGCTGTGTAAAGTGTGTTCCATAGACGGTATAAAGaGAGACAAACTCAGATGCTGACCAGTTCCTTGCATTCAGTCAGGCCAAAACACCATTAAGAGAAGTGAAACAAATAGCtaatagctaaaaaaaaaagtgcagctgGAAACCTAAGTATTGTAAGTTTCAAAGCATCTGTAATAGCAGATGTGCACCTCACCTCAACCTAGAGAAAACCACAACATGATAGAAGCGGAAGTATATGTTATCAGTTTAATCTTTGCAGTCTCTGTGCACAAATTAGCATTTTGCTGTCAAATTTTGGAAATATCTCTGCAAAATTTCTAATGAGATTAATCAGCacttcaccaaaacaagtcatTTTCAAATCATTATACTCTATATTCTATCATGCAGACTGACTAGCCATGTGAATAATATGCATACCATATCTTAACTGCAACATCCTTGGTTTCATTCAAGTTGACCACCTTTGTTGCACGtcatcccctcctcctcccctcccccccccctctctcaagGCATTTTCTTACTGTAGCCCACATAATggcaaaatgccaaaaataatgaagtgaaaaaaaactCAGAGCCAAGACATGCAACTGTTTTCACACCCTACGGTCTAACCTTCAGTAATAAACTGACTTTGACATGTAAAATTGGTGAAGTGCCCCTTTAAAAGTACACATTCTCATTAATGACAGTAGTATACTGGTCGAAAACCCACCTGAATTTACGGAGTGGCCCCTAAATGCTAGTGCAGTCAGTAAGGCAAACCATCATTTCTAGGTGGGGCAGTTTCAAAATTTTCATTGGCTAAATTTAGAACTGCAAAAATGAATCAATTTGTTGTCAACTGTTACAGTAATCACCACCTATTTGATTTCAGcatctgcacgtagcctagttgggcctactgtaggtttggtgtataaatgtagtatattaaaatgcaattaggtcgagcagacagtccgaaacattgtAAGCTCGCCTCGCCGacaact

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96917 False 448 TUCP 0.51 3 14626478 14630463
XM_039804932.1 True 2706 mRNA 0.42 3 14626478 14632721
XM_039804933.1 False 2231 mRNA 0.44 4 14626478 14632721

Neighbor

gene id symbol gene type direction distance location
LOC120561617 NA coding upstream 6597 14611912 ~ 14619881 (+)
LOC120561930 NA coding upstream 18574 14603952 ~ 14607904 (+)
LOC120561707 NA coding upstream 22795 14600889 ~ 14603683 (+)
si:cabz01093077.1 NA coding upstream 32494 14590243 ~ 14593984 (+)
LOC120561614 NA coding upstream 38026 14584035 ~ 14588452 (+)
LOC120562066 NA coding downstream 70702 14703423 ~ 14704824 (+)
dnah5 dnah5 coding downstream 129649 14762370 ~ 14874113 (+)
trnae-cuc_16 NA coding downstream 393861 15026582 ~ 15026653 (+)
irx2a irx2,LOC102783739 coding downstream 775457 15408178 ~ 15414047 (+)
LOC120562533 lpcat1,LOC103360438,LOC100699650 coding downstream 986795 15619516 ~ 15653052 (+)
G72551 NA non-coding upstream 21840 14603984 ~ 14604638 (+)
G72520 NA non-coding upstream 108581 14514667 ~ 14517897 (+)
G72466 NA non-coding upstream 462734 14163536 ~ 14163744 (+)
LOC120561831 NA non-coding upstream 538682 14086603 ~ 14087796 (+)
G72319 NA non-coding upstream 1093476 13532125 ~ 13533002 (+)
G72559 NA non-coding downstream 359 14633080 ~ 14633375 (+)
G72560 NA non-coding downstream 1456 14634177 ~ 14635023 (+)
G72561 LOC103365327 non-coding downstream 5149 14637870 ~ 14640768 (+)
LOC120562067 NA non-coding downstream 11655 14644376 ~ 14645788 (+)
G72634 NA non-coding downstream 367950 15000671 ~ 15003134 (+)
G72506 NA other upstream 200298 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 256387 14175817 ~ 14370091 (+)
cmc1 cmc1 other upstream 482182 14133584 ~ 14144296 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other upstream 580342 13754053 ~ 14046136 (+)
LOC120562711 eif3h other upstream 937964 13624448 ~ 13688514 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other downstream 920743 15553464 ~ 15560292 (+)
G72750 LOC104952694,LOC106925895 other downstream 1385638 16018359 ~ 16072201 (+)
G73031 LOC103366415 other downstream 2816864 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 2823922 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 3012792 17645513 ~ 17647186 (+)

Expression


Co-expression Network