LOC120562067


Basic Information

Item Value
gene id LOC120562067
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14644376 ~ 14645788 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU96925
GGCGGGACTCGGGAGATGAGTCCGAGAGTTAGAGCAAAAACTTCTGAAATGTGGGAATATTTCAGGCCAAAtggtaaaagagttgtctgtacactctgtcagacttcacttggaaacacacaggagttgttcaagACGTTTGGAGagggtttttttctctcctccatatcacctccggggctccaaagatgcgctcacagaaaagaaaaagtcaacAAAGCAGTCGCCGTCTTCACAACTCCGAGACAAACTGTAGCAAGCGCTACTAACCGGAGCAAGGactaacctcgcctcataacgAGGCTGTGACCTATATTTGCTAGGAGCTAtgtctgcaagtccagatttacatgatgctgataatgacgccattgtgtctgcctgtaagacatattacgagacagcacgcaggagcttcagctagaaacaaccagatgtggcatcgcgggcagaagctgtgaagagttcagctcggagtcggtcgagaagaaaagaggctgctggaagcgagacagagtgagctggctgcgggtgaggtgggcatttggaagtgcgccacCATAGACCTACAGGACAAGgcaccacagacgtctgctaaatggaccgaattcagaccgaatgctgccggttacctccagctcCGAGGCGGCCGAGGGTTAGGTGTGGACGGTGCTGCTTCTCGTGAGCgtgggatatttgttgtgtgtgctgtgtgtctccgatgctttgtacatagttttttttctgattgcgtttgtgttttgtgtcaataaagctctatctttgaataaacagcacgttcctggcaaatcattttaactatgataatcatgacatgaatatacaacatag
>XR_005639683.1
GCAGTCGCCGTCTTCACAACTCCGAGACAAACTGTAGCAAGCGCTACTAACCGGAGCAAGGactaacctcgcctcataacgAGGCTGTGACCTATATTTGCTAGGAGCTAtgtctgcaagtccagatttacatgatgctgataatgacgccattgtgtctgcctgtaagacatattacgagacagcacgcaggagcttcagc

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU96925 True 852 lncRNA 0.48 5 14644376 14645788
XR_005639683.1 False 202 lncRNA 0.50 3 14644841 14645241

Neighbor

gene id symbol gene type direction distance location
LOC120561617 NA coding upstream 24495 14611912 ~ 14619881 (+)
LOC120561930 NA coding upstream 36472 14603952 ~ 14607904 (+)
LOC120561707 NA coding upstream 40693 14600889 ~ 14603683 (+)
si:cabz01093077.1 NA coding upstream 50392 14590243 ~ 14593984 (+)
LOC120561614 NA coding upstream 55924 14584035 ~ 14588452 (+)
LOC120562066 NA coding downstream 57635 14703423 ~ 14704824 (+)
dnah5 dnah5 coding downstream 116582 14762370 ~ 14874113 (+)
trnae-cuc_16 NA coding downstream 380794 15026582 ~ 15026653 (+)
irx2a irx2,LOC102783739 coding downstream 762390 15408178 ~ 15414047 (+)
LOC120562533 lpcat1,LOC103360438,LOC100699650 coding downstream 973728 15619516 ~ 15653052 (+)
G72561 LOC103365327 non-coding upstream 3608 14637870 ~ 14640768 (+)
G72560 NA non-coding upstream 9353 14634177 ~ 14635023 (+)
G72559 NA non-coding upstream 11001 14633080 ~ 14633375 (+)
G72551 NA non-coding upstream 39738 14603984 ~ 14604638 (+)
G72520 NA non-coding upstream 126479 14514667 ~ 14517897 (+)
G72634 NA non-coding downstream 354883 15000671 ~ 15003134 (+)
LOC120562980 NA non-coding downstream 455028 15100816 ~ 15163246 (+)
G72680 NA non-coding downstream 944109 15589897 ~ 15590158 (+)
G72704 NA non-coding downstream 1191174 15836962 ~ 15844938 (+)
G72705 NA non-coding downstream 1198522 15844310 ~ 15847320 (+)
LOC120561718 LOC107101581 other upstream 11655 14626478 ~ 14632721 (+)
G72506 NA other upstream 218196 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 274285 14175817 ~ 14370091 (+)
cmc1 cmc1 other upstream 500080 14133584 ~ 14144296 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other upstream 598240 13754053 ~ 14046136 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other downstream 907676 15553464 ~ 15560292 (+)
G72750 LOC104952694,LOC106925895 other downstream 1372571 16018359 ~ 16072201 (+)
G73031 LOC103366415 other downstream 2803797 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 2810855 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 2999725 17645513 ~ 17647186 (+)

Expression


Co-expression Network