LOC120562980


Basic Information

Item Value
gene id LOC120562980
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 15100816 ~ 15163246 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU97047
CAGGATTTAAAGGAAGTAACTtttataaagaagaagaagaagaagaagaagaagtcatTTTTCCAGGAAGTAAAAATCCCACATGGCAAACAATTATGTGAAAATGTAGATCACTGCCTCCATTCTTAAACATGCTGAACAAACAAAGATGCACATTAGGAGGCAGAGCAAATGTAAGGTTGAGTTTGATTCTGAATTAGGTAGCCAGCCAATTCCTTCCTGCATTAAATGCCAAAGAAAATGGAAAAGTTTGCAAATGCAAGACCCACACACTCAATCTGCTGCAAAGAAAGGAAGGCAGCTATGCTGTGTTTTCAACTAGCAGCAGTATGTGGATAAAAACTGAACTTTTAAGCTGACATACTTTTCAAACTGATAAAAATGCACAGTTCTTACTGGTCGTCAAGTCTCTGGTAAAGCTGGAGGCCAAGAGGGAGGACTTTTATAAGAGAACAGATGTCTTCATGAAGATGGCTACATGGACTTTTTCCAAGTGACAACAAACTGCAGATCTACAAAAATATTATCACAATTACCCTGTGAGCCAGGACGggagggaactccccgccgctCGTGACTGTCTGTGTGCCACCCTCGGGCTTGTGGTCTGGTCGGATTTGTGAAACACTGACAGACAACCCCTTCATCAAGCCTGTCAAACAAGGATGACAAATGCGTCTCCACATCCCCAAGATGCCTACAATATTTAAAGCCATGGGAGAATGGCGAAGCTGACAGAGAATAGCAGACGCAAAGTTCAAGCCGCGTCAGGCTGTATCATTCTCAAATTCTGAGGAGAGACTCTGAGTTGAACCTGATGGCATGTTGACTTAATGATTCTGACAGAGCATATATGGTGTCTGTCTCAGGTTTCTACAAGGCAGTGAAGTCAAGTCAAAATATATTTCATCGACTTAAAGAGGGATTTGCTTACAATGCTGCATATTAAATACGTATATGATTACCT
>XR_005639889.1
atTTTTCCAGGAAGTAAAAATCCCACATGGCAAACAATTATGTGAAAATGTAGATCACTGCCTCCATTCTTAAACATGCTGAACAAACAAAGATGCACATTAGGAGGCAGAGCAAATGTAAGGTTGAGTTTGATTCTGAATTAGGTAGCCAGCCAATTCCTTCCTGCATTAAATGCCAAAGAAAATGGAAAAGTTTGCAAATGCAAGACCCACACACTCAATCTGCTGCAAAGAAAGGAAGGCAGCTATGCTGTGTTTTCAACTAGCAGCAGTATGTGGATAAAAACTGAACTTTTAAGCTGACATACTTTTCAAACTGATAAAAATGCACAGTTCTTACTGGTCGTCAAGTCTCTGGTAAAGCTGGAGGCCAAGAGGGAGGACTTTTATAAGAGAACAGATGTCTTCATGAAGATGGCTACATGGACTTTTTCCAAGTGACAACAAACTGCAGATCTACAAAAATATTATCACAATTACCCTGTGAGCCAGGACGggagggaactccccgccgctCGTGACTGTCTGTGTGCCACCCTCGGGCTTGTGGTCTGGTCGGATTTGTGAAACACTGACAGACAACCCCTTCATCAAGCCTGTCAAACAAGGATGACAAATGCGTCTCCACATCCCCAAGATGCCTACAATATTTAAAGCCATGGGAGAATGGCGAAGCTGACAGAGAATAGCAGACGCAAAGTTCAAGCCGCGTCAGGCTGTATCATTCTCAAATTCTGAGGAGAGACTCTGAGTTGAACCTGATGGCATGTTGACTTAATGATTCTGACAGAGCATATATGGTGTCTGTCTCAGGTTTCTACAAGGCAGTGAAGTCAAGTCAAAATATATTTCATCGACTTAAAGAGGGATTTGCTTACAATGCTGCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97047 True 967 lncRNA 0.41 4 15100816 15163246
XR_005639889.1 False 889 lncRNA 0.43 3 15100974 15163224

Neighbor

gene id symbol gene type direction distance location
trnae-cuc_16 NA coding upstream 74163 15026582 ~ 15026653 (+)
dnah5 dnah5 coding upstream 226703 14762370 ~ 14874113 (+)
LOC120562066 NA coding upstream 395992 14703423 ~ 14704824 (+)
LOC120561617 NA coding upstream 480935 14611912 ~ 14619881 (+)
LOC120561930 NA coding upstream 492912 14603952 ~ 14607904 (+)
irx2a irx2,LOC102783739 coding downstream 244932 15408178 ~ 15414047 (+)
LOC120562533 lpcat1,LOC103360438,LOC100699650 coding downstream 456270 15619516 ~ 15653052 (+)
slc6a3 slc6a3 coding downstream 493995 15657241 ~ 15675222 (+)
LOC120563110 dcdc2,LOC102296430,LOC102788673 coding downstream 519173 15682419 ~ 15707502 (+)
mboat1 mboat1 coding downstream 1332480 16495726 ~ 16508741 (+)
G72634 NA non-coding upstream 97682 15000671 ~ 15003134 (+)
LOC120562067 NA non-coding upstream 455028 14644376 ~ 14645788 (+)
G72561 LOC103365327 non-coding upstream 460048 14637870 ~ 14640768 (+)
G72560 NA non-coding upstream 465793 14634177 ~ 14635023 (+)
G72559 NA non-coding upstream 467441 14633080 ~ 14633375 (+)
G72680 NA non-coding downstream 426651 15589897 ~ 15590158 (+)
G72704 NA non-coding downstream 673716 15836962 ~ 15844938 (+)
G72705 NA non-coding downstream 681064 15844310 ~ 15847320 (+)
LOC120562129 NA non-coding downstream 805931 15969177 ~ 16009134 (+)
G72775 NA non-coding downstream 1011848 16175094 ~ 16181930 (+)
LOC120561718 LOC107101581 other upstream 468095 14626478 ~ 14632721 (+)
G72506 NA other upstream 674636 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 730725 14175817 ~ 14370091 (+)
cmc1 cmc1 other upstream 956520 14133584 ~ 14144296 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other upstream 1054680 13754053 ~ 14046136 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other downstream 390218 15553464 ~ 15560292 (+)
G72750 LOC104952694,LOC106925895 other downstream 855113 16018359 ~ 16072201 (+)
G73031 LOC103366415 other downstream 2286339 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 2293397 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 2482267 17645513 ~ 17647186 (+)

Expression


Co-expression Network