irx4a (LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173)


Basic Information

Item Value
gene id irx4a
gene name LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 15553464 ~ 15560292 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU97064
TTCTGACGTCAGAGTCACCGCCGTTTAAAACAACCTGCCTCTGCTGCTGACGTCTTTTATACTATGTTTTTATACGGCAAAAATATGTATCTGACAACAAAGTGATTATTCCAGGCACAGGAAGCCCGTATCACCTTAATTCGTTTATCTATTCATaatatagctttaaaaaaagggaGAGCTAGaagatttttttactttttttattttttcgccATTGAAAGGCGTTTGAGTGGGGGGCATTTTCCACAAATTAAACATGCTACTCTGCTTCGCCCTATAAGCATCCAGGAGCCAGTGCTTAACAATCAATTGGTACAGTCAAACAGAGCTGCAGCCTGCGTTAGAGTGGAGACCTTCAGTCTCGCTTTATTTCTGGATATTGGGGGACCTCTCTACCATGTCATATCCACAATTTGGATATCCCTATTCGTCTGCTCCACAATTCCTGATGACAACCAACTCTCTGACCACTTGCTGCGAGTCCACCGGCAGATCCATAGCCGACTCCGGAGTAGCAGCGTCCGGGCAGACACCAGTCTACTGCCCCGTGTACGAGAGCCGGCTGCTGGCCACGGCGAGACATGAACTCAGCTCAGCCGCCGCGCTTGGCGTGTACGGGAGCCCCTACACCGGCAGTCAAGGCTATGGGAATTACGTTACATACGGCACGGACGCCTCGGCTTTCTACTCGCTGGGCGCATTCGATACTAAAGATGCCACAGCTTCTGCGCATGCGGGAATAACCCAGGCAACAGCGTACTATCCTTATGATCCTACATTGGGACAGTATCAGTATGACAG
>XM_039804827.1
CAAAAATATGTATCTGACAACAAAGTGATTATTCCAGGCACAGGAAGCCCGTATCACCTTAATTCGTTTATCTATTCATaatatagctttaaaaaaagggaGAGCTAGaagatttttttactttttttattttttcgccATTGAAAGGCGTTTGAGTGGGGGGCATTTTCCACAAATTAAACATGCTACTCTGCTTCGCCCTATAAGCATCCAGGAGCCAGTGCTTAACAATCAATTGGTACAGTCAAACAGAGCTGCAGCCTGCGTTAGAGTGGAGACCTTCAGTCTCGCTTTATTTCTGGATATTGGGGGACCTCTCTACCATGTCATATCCACAATTTGGATATCCCTATTCGTCTGCTCCACAATTCCTGATGACAACCAACTCTCTGACCACTTGCTGCGAGTCCACCGGCAGATCCATAGCCGACTCCGGAGTAGCAGCGTCCGGGCAGACACCAGTCTACTGCCCCGTGTACGAGAGCCGGCTGCTGGCCACGGCGAGACATGAACTCAGCTCAGCCGCCGCGCTTGGCGTGTACGGGAGCCCCTACACCGGCAGTCAAGGCTATGGGAATTACGTTACATACGGCACGGACGCCTCGGCTTTCTACTCGCTGGGCGCATTCGATACTAAAGATGCCACAGCTTCTGCGCATGCGGGAATAACCCAGGCAACAGCGTACTATCCTTATGATCCTACATTGGGACAGTATCAGTATGACAGGTATGTTGTTTCTGCTAAAAATGCGGAGAACGACACGGCGGAAACCCAGCAAGCCCTGAAGGCCTGGCTGCAGGAACACAGGAAGAACCCGTACCCGACCAAAGGAGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCTGACGCAGGTCTCCACGTGGTTCGCCAACGCCAGGAGGAGGCTCAAGAAGGAGAACAAGATGACATGGCCGCCCAGGAACAAGGGCTCAGAGGAGAAGAGATATGACGAGGATGAAGATGGGTCTCAGGAGGAGCAGATCAAAAGCGAGAACAATGAGGATGAGACCAGAAGTCGGCCTGATAAGGACCTCCAGTTGAGCGACTTGGACGACTTCGACACGCTGGAGTCTGAGAGCTCTGAGTGTGAGCTGAAGCACCGATaccacatgaacacacacatgtcAACGACGGGCGACTGCCCCGCCGAACACCTCATCAAGGACGCGTCTCTGAAAATCTCCATCCCTGTTTCTCTGGGAGGCGAGCAGGACTTGAGCAAAAGTTGTCTGAAAACGAGCCCGGAGGATTTCCAGGCGGACAGCAGACAGCAGGCAAAAGCATGTTAtaaccaacagcagcagcagcaggagcagcacgGGCACCAGATATTAGACGGCAAGCCTCGGATCTGGTCATTGGCCCAAACTGCGACGTCCCTGAACCAGACTGAGTACCCGTCGTGTATGCTTAGGTGCCAGCCGCCGCCCTCCTCCCTCACCCCATCCCCCGCCGCTACCTCACCCGTGACCGGCCTGGACAACAGGCATGACTCGCCGGTCACGACCCTGAGAAACTGGGTGGACGGGGTGTTCCACGACCCCTTGTTCAGGCACAGCACTTTGAGCCAGGCTCTGACCAACACCACCGTCTCTTGGACCACGAACACCAAAGGCGCCATCCTGGAGGCTGAGAGGAGCGCGGCGGCCTTGCAGCAGCACCAAGACTCCTCCAAAGACAGTGCCATGAGTTTCCCAAAAACTATCAACAAACTTTTCTGCTCGTAACAAAACCAAATGACCCTTTTattgcaaagagagagagagggtctcTTTGTGACTGACTGAAAGTCGGATGGAAAAGCTTATTTCGTCTCCATGGTTCCCTCATTGTTTGattcgtttgttttttttaacacaatgcTATCTATATAGGCTACTGTTACATTGGCGTTACATGCGTGAAATATCCGGATCGGTTTGGCTTATTTGATTTAACGCACGCACAGAAATGTATAACTAAAAGTTTACatcttggggggaaaaaataggtttacatgatttttattttttctttactaTGCGCATGCAAATGTAATTGAATATTATTTAGTTCTCAGCAGTTGAGTATCActattaaaagaagaaaaaaaaaagtctcacaaATGCACAGCTCTGTTAGGAAGTGGATGAGAGCGTCTCAACTTTGttcactgaaaataaaagcagtcgGTTTCTGAAGAGCG

Function

NR:

description
iroquois-class homeodomain protein irx-4-A-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
TU97064 False 804 TUCP 0.48 3 15553464 15555952
XM_039804827.1 True 2212 mRNA 0.50 5 15553541 15560292

Neighbor

gene id symbol gene type direction distance location
irx2a irx2,LOC102783739 coding upstream 139417 15408178 ~ 15414047 (+)
trnae-cuc_16 NA coding upstream 526811 15026582 ~ 15026653 (+)
dnah5 dnah5 coding upstream 679351 14762370 ~ 14874113 (+)
LOC120562066 NA coding upstream 848640 14703423 ~ 14704824 (+)
LOC120561617 NA coding upstream 933583 14611912 ~ 14619881 (+)
LOC120562533 lpcat1,LOC103360438,LOC100699650 coding downstream 59224 15619516 ~ 15653052 (+)
slc6a3 slc6a3 coding downstream 96949 15657241 ~ 15675222 (+)
LOC120563110 dcdc2,LOC102296430,LOC102788673 coding downstream 122127 15682419 ~ 15707502 (+)
mboat1 mboat1 coding downstream 935434 16495726 ~ 16508741 (+)
LOC120562688 tnfrsf11b,LOC103369092 coding downstream 1072584 16632876 ~ 16718524 (+)
LOC120562980 NA non-coding upstream 390218 15100816 ~ 15163246 (+)
G72634 NA non-coding upstream 550330 15000671 ~ 15003134 (+)
LOC120562067 NA non-coding upstream 907676 14644376 ~ 14645788 (+)
G72561 LOC103365327 non-coding upstream 912696 14637870 ~ 14640768 (+)
G72560 NA non-coding upstream 918441 14634177 ~ 14635023 (+)
G72680 NA non-coding downstream 29605 15589897 ~ 15590158 (+)
G72704 NA non-coding downstream 276670 15836962 ~ 15844938 (+)
G72705 NA non-coding downstream 284018 15844310 ~ 15847320 (+)
LOC120562129 NA non-coding downstream 408885 15969177 ~ 16009134 (+)
G72775 NA non-coding downstream 614802 16175094 ~ 16181930 (+)
LOC120561718 LOC107101581 other upstream 920743 14626478 ~ 14632721 (+)
G72506 NA other upstream 1127284 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 1183373 14175817 ~ 14370091 (+)
cmc1 cmc1 other upstream 1409168 14133584 ~ 14144296 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other upstream 1507328 13754053 ~ 14046136 (+)
G72750 LOC104952694,LOC106925895 other downstream 458067 16018359 ~ 16072201 (+)
G73031 LOC103366415 other downstream 1889293 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 1896351 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 2085221 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 2190638 17750930 ~ 17779130 (+)

Expression


Co-expression Network