LOC120562129


Basic Information

Item Value
gene id LOC120562129
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 15969177 ~ 16009134 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU97154
CTGCGTGGGTCTTTCCTCACAGTGTGGAACTTCTGACACTGGGCAGCCGTCCCAAATACATAAGGCCCCTACCCTGCTCAGCCCAGTCTGCCAAGCTCCAACTCTGGTTTGATGTTCCTCCAAAATCCAACAGGAATAAGGAGTTCCTTCTTCTTAAAGCTGAGCAAGAACATACAGGACCAACTCTCTACCCCTTCTCAATCATGAGTTGACATGATGAAAGAAACTAAAATTATTAGGCTGTTCTAGTGTCATCTTTACTTTTCCCCctacaaaaaaacatgtttatggGGAGTTACAACTGTAGGCTCCAGTGAAGAAGCATTCCATCCTCTATTGCCTCAGCACTGATGAGACACTGTGCTCACTATTTGTATTATTGTCAAAAACAATTACTTCAACATGCTCAAGTTTCAAATGTGAGTGAATAACTGTATATCATCATGAAGCCATACCCCAGACAAACTGTAGACATCATTGTTTCCATTGtattcaatcttttttttttttttttttaatgatcacTTATTTCCAAAGATTCCCTGCTATTTTCCTTTTCCACCCCTGTGTGTTAGTTCTAAACTATAAATTATGTCACTCACTCTGCCACTGGGCTTCTCGCTCATTATGGCTAAACTGATAACACATGCAGAGAAGCTTTTAACTGTTAGAACATTTCAACACTAAACAGCTGACTATGTCAGAGCTTTTAAAGGGCTAGCacataaaaaaatcaatttgaAGCTGAAGATCAATTTCTTTAGCCATGTTGTAGTAAAACACATCAATACAGGCTACATTGTCATCACTGCTTTCATATTGTAGAGGATGCTACTGTTG
>TU97156
CTGCGTGGGTCTTTCCTCACAGTGTGGAACTTCTGACACTGGGCAGCCGTCCCAAATACATAAGGCCCCTACCCTGCTCAGCCCAGTCTGCCAAGCTCCAACTCTGGTTTGATGTTCCTCCAAAATCCAACAGGAGCTCAGCCCTCGTTTTCTGGCATCCCTTGTTAACCGTTAAAACAGAAGAAGGAAGcagGCCTTTGTATGGTTAGCAATATCCAGTGGTCCCAGCAATGAAAGGTGTTAC
>XR_005639697.1
TTTTGCCCCGCAGACTGCGTGGGTCTTTCCTCACAGTGTGGAACTTCTGACACTGGGCAGCCGTCCCAAATACATAAGGCCCCTACCCTGCTCAGCCCAGTCTGCCAAGCTCCAACTCTGGTTTGATGTTCCTCCAAAATCCAACAGGAATAAGGAGTTCCTTCTTCTTAAAGCTGAGCAAGAACATACAGGACCAACTCTCTACCCCTTCTCAATCATGAGTTGACATGATGAAAGAAACTAAAATTATTAGGCTGTTCTAGTGTCATCTTTACTTTTCCCCctacaaaaaaacatgtttatggGGAGTTACAACTGTAGGCTCCAGTGAAGAAGCATTCCATCCTCTATTGCCTCAGCACTGATGAGACACTGTGCTCACTATTTGTATTATTGTCAAAAACAATTACTTCAACATGCTCAAGTTTCAAATGTGAGTGAATAACTGTATATCATCATGAAGCCATACCCCAGACAAACTGTAGACATCATTGTTTCCATTGtattcaatctttttttttttttttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97154 True 840 lncRNA 0.39 3 15969191 16009134
TU97156 False 244 lncRNA 0.51 4 15969191 16005395
XR_005639697.1 False 531 lncRNA 0.41 3 15969177 16008811

Neighbor

gene id symbol gene type direction distance location
LOC120563110 dcdc2,LOC102296430,LOC102788673 coding upstream 261675 15682419 ~ 15707502 (+)
slc6a3 slc6a3 coding upstream 293955 15657241 ~ 15675222 (+)
LOC120562533 lpcat1,LOC103360438,LOC100699650 coding upstream 316125 15619516 ~ 15653052 (+)
irx2a irx2,LOC102783739 coding upstream 555130 15408178 ~ 15414047 (+)
trnae-cuc_16 NA coding upstream 942524 15026582 ~ 15026653 (+)
mboat1 mboat1 coding downstream 486592 16495726 ~ 16508741 (+)
LOC120562688 tnfrsf11b,LOC103369092 coding downstream 623742 16632876 ~ 16718524 (+)
LOC120562690 NA coding downstream 712502 16721636 ~ 16724556 (+)
LOC120562939 NA coding downstream 717214 16726348 ~ 16729348 (+)
LOC120562315 NA coding downstream 723498 16732632 ~ 16816257 (+)
G72705 NA non-coding upstream 121857 15844310 ~ 15847320 (+)
G72704 NA non-coding upstream 124239 15836962 ~ 15844938 (+)
G72680 NA non-coding upstream 379019 15589897 ~ 15590158 (+)
LOC120562980 NA non-coding upstream 805931 15100816 ~ 15163246 (+)
G72634 NA non-coding upstream 966043 15000671 ~ 15003134 (+)
G72775 NA non-coding downstream 165960 16175094 ~ 16181930 (+)
G72795 e2f3 non-coding downstream 471545 16480679 ~ 16481932 (+)
G72796 NA non-coding downstream 473121 16482255 ~ 16482498 (+)
G72797 NA non-coding downstream 476579 16485713 ~ 16485919 (+)
G72798 e2f3 non-coding downstream 480459 16489593 ~ 16490381 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 408885 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 1336456 14626478 ~ 14632721 (+)
G72506 NA other upstream 1542997 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 1599086 14175817 ~ 14370091 (+)
cmc1 cmc1 other upstream 1824881 14133584 ~ 14144296 (+)
G72750 LOC104952694,LOC106925895 other downstream 9225 16018359 ~ 16072201 (+)
G73031 LOC103366415 other downstream 1440451 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 1447509 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 1636379 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 1741796 17750930 ~ 17779130 (+)

Expression


Co-expression Network