LOC120562806


Basic Information

Item Value
gene id LOC120562806
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18466428 ~ 18470078 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU97978
aaagtttgaaagttttgtgttttctcaGCCTACACCTTGAAATGTTATGAGTGTACACCGGGAATCTCAGGAACCTGCACAGATACATCAAAAGAATGCCCTTTGCAGGGTCAACAGTGTGGAGCAATTAAAGTCACTTCATATGCAGGTGGTTCAAAAATTCTTGATGTCAACTCAAAAAGCTGTGCTTTGGCTGAAGAGTGTGTTGAGGCCTCTGTCAACTTTGGAATAGCCAACACCGTAATAACCAGCAACTGTTGCACTTCCGATCTCTGCAACACCCAACCTGCCCCTGAACCCAGCAAATCCAATCCAAATGGTAAAAAGTGCTTCTCCTGTGACGGACAAAAGTGCACCAACACTCTAAACTGTGAGGGGAATGAGGACTACTGCATCTCAACAACAGTGAATGCAGGAGGTCAAACAGTGACCATGAAGGGCTGTGCCTCCAAGACGATTTGCTCAACGCAAACCACACAGACTGCAGGAGCCCTTGGAACAGAAATTAGCTGCTGTCaggggaacttctgcaacagccCGCAGCACGCAAGTGCTGGCCTTCTGCTCCTGGTGGCACCGCTGGTCTCTTTGGTCATGCTCTCCTAACTGGTGGAGACGGCAGCATCACCACTCAGCTTTTCTCTCATCTTTGCATGGCCTCATACTGCTGCTCAACACCCCGGTCCCAATCCTTTCCGCCAATGAGTGAGAAAGTTTAGCAAGCaaagtataataatataattgagTAAAATAGTCTTTTCACTTGTCTCTTGCCTCATACAGTTTCTTGCAGGatcattctttctttttatGGTTGCCTATAGACCATTTCACTGTTTTTGTTCTGAGTGCTATTATTATTCTGAAACCTACTTTTAATGTTAATTATCAAGAATATTTTGAAGTTACTGATAAAagcagaataaataaaaatcttaaaattctgctgtttattccgattgtatttctgttttcttGAGTAATCTAGGCCTTTTTATTTCTGAGTCTcgtttaaaatacatttgtctCACATAATCATTAAGGATACTCAGTTTCAAAGTTGAAGCATGTCATACTTTGCTGTCACAGTGTGTGCAGGTCTTTAACATGTCAAAGATTGagcattaataacattaatatataataaatacagaaaGGGCTCTCAATGTTACTCAATCATAAACTAATTTTCAACAAATGCC
>XM_039806707.1
ACACCATCCTCACTGAGAAGAACTGATCAAACTGAAACTCAGTAGAATCCTGCCATCACAGAATGCATCTCCTGATGCTGATCTTTGGGATTGTGCTTCTCCCTAAAGCCTACACCTTGAAATGTTATGAGTGTACACCGGGAATCTCAGGAACCTGCACAGATACATCAAAAGAATGCCCTTTGCAGGGTCAACAGTGTGGAGCAATTAAAGTCACTTCATATGCAGGTGGTTCAAAAATTCTTGATGTCAACTCAAAAAGCTGTGCTTTGGCTGAAGAGTGTGTTGAGGCCTCTGTCAACTTTGGAATAGCCAACACCGTAATAACCAGCAACTGTTGCACTTCCGATCTCTGCAACACCCAACCTGCCCCTGAACCCAGCAAATCCAATCCAAATGGTAAAAAGTGCTTCTCCTGTGACGGACAAAAGTGCACCAACACTCTAAACTGTGAGGGGAATGAGGACTACTGCATCTCAACAACAGTGAATGCAGGAGGTCAAACAGTGACCATGAAGGGCTGTGCCTCCAAGACGATTTGCTCAACGCAAACCACACAGACTGCAGGAGCCCTTGGAACAGAAATTAGCTGCTGTCaggggaacttctgcaacagccCGCAGCACGCAAGTGCTGGCCTTCTGCTCCTGGTGGCACCGCTGGTCTCTTTGGTCATGCTCTCCTAACTGGTGGAGACGGCAGCATCACCACTCAGCTTTTCTCTCATCTTTGCATGGCCTCATACTGC

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97978 True 1202 lncRNA 0.41 4 18467701 18470078
XM_039806707.1 False 748 mRNA 0.49 6 18466428 18469544

Neighbor

gene id symbol gene type direction distance location
smg9 smg9 coding upstream 30179 18425189 ~ 18436249 (+)
si:dkey-79d12.5 NA coding upstream 68711 18395407 ~ 18397717 (+)
LOC120562815 NA coding upstream 77969 18387345 ~ 18388459 (+)
has1 has1,LOC102795195,LOC103143133 coding upstream 147762 18314669 ~ 18318666 (+)
LOC120562798 LOC104954816,LOC108249991,LOC102795480 coding upstream 154930 18310072 ~ 18311498 (+)
LOC120562809 NA coding downstream 4424 18474502 ~ 18479022 (+)
LOC120562811 NA coding downstream 75595 18545673 ~ 18548197 (+)
LOC120562049 NA coding downstream 168131 18638209 ~ 18641329 (+)
LOC120561938 NA coding downstream 230224 18700302 ~ 18712968 (+)
LOC120562799 NA coding downstream 254974 18725052 ~ 18743800 (+)
G73330 NA non-coding upstream 17999 18440987 ~ 18448429 (+)
G73326 NA non-coding upstream 42025 18423989 ~ 18424403 (+)
G73311 NA non-coding upstream 71233 18391339 ~ 18395195 (+)
G73307 NA non-coding upstream 135515 18330667 ~ 18330913 (+)
G73254 NA non-coding upstream 255005 18202757 ~ 18211423 (+)
LOC120562823 NA non-coding downstream 20046 18490124 ~ 18495344 (+)
G73338 NA non-coding downstream 31073 18501151 ~ 18565082 (+)
G73361 NA non-coding downstream 216964 18687042 ~ 18692970 (+)
G73377 NA non-coding downstream 280267 18750345 ~ 18750799 (+)
G73484 NA non-coding downstream 343231 18813309 ~ 18815597 (+)
LOC120562807 NA other upstream 5102 18455574 ~ 18461326 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other upstream 45707 18399056 ~ 18420721 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other upstream 687298 17750930 ~ 17779130 (+)
G73123 phactr4 other upstream 819242 17645513 ~ 17647186 (+)
ubxn11 NA other upstream 1005310 17456643 ~ 17461118 (+)
LOC120562796 NA other downstream 162324 18632402 ~ 18637307 (+)
LOC120562819 NA other downstream 182308 18652386 ~ 18655731 (+)
LOC120562824 NA other downstream 274584 18744662 ~ 18746675 (+)
proser3 NA other downstream 349123 18819201 ~ 18828688 (+)
kmt2bb kmt2b other downstream 363167 18833245 ~ 18861958 (+)

Expression


Co-expression Network