LOC120562807


Basic Information

Item Value
gene id LOC120562807
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18455574 ~ 18461326 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU97980
CACAGAATGCATCTCCTGATGCTGATCTTTGGGATTGTGCTTCTCCCTAAAGGcaagtttttgttttatctGTTTCTTTAAACTGTTTAATCTTAAAAATAGAGAAGGATTGTACATGATTGTCATATGCCACATACCAGTAGGCAACTGTATGCCCAACATATACATGTTATTGGTTAGTTTTACTTGTCACTGCTATTGCTTTTTGTACCTCACCTGTTCGTCCACGGATGATTTGACCTCTTTTCTATTCCGttgaaaaacaagcaaaaaaatgtcaaaacttCACTTTGCAACCACCTTCATGCTgtacaacacatttttttttgtatctgcactcataatttttattttacctcaGAGTTAAGGtgtcaaaattattattatttttttaagtttaaagtttgaaagTTTTGTGATTTCTCAGCCTACACCTTGAAATGTTATGAGTGTACACCGGGAATCTCAGGAACCTGCACAGATACATCAAAAGAATGCCCTTTGCAGGGTCAACAGTGTGGGGCAATTAAAGTCACTTCATATGCAGGTGGTTCAAAAATTCTTGATGTCAACTCAAAAAGCTGTGCTTTGGCTGAAGAGTGTGTTGAGGCCTCTGTCAACTTTGGAATAGCCAACACCGTAATAACCAGCAACTGTTGCACCTCCGATCTCTGCAACACCCAACCTGCCCCTGAACCCAGCAAATACAATCCAAATGGTAAAAAGTGCTTCTCCTGTGACGGACAAAAGTGCACCAACACTCTAAACTGTGAGGGGAATGAGGACTACTGCATCTCAACAACAGTGAATGCAGGAGGTCAAACAGTGACCATGAAGGGCTGTGCCTCCAAGACGATTTGCTCAACGCAAACCACACAGACTACAGGAGCCCTTGGAACAGAAATTAGCTGCTGTCaggggaacttctgcaacagcgCCAGCAGCACAAGTGCTGGCCTTCTGCTCCTGGTGGCACCGCTGGTCTCTTTGGTCATGCTCTCCTAACTGGTGGAGACGGCAGCATCACCACTCAGCTTTTCTCTCATCTTTGCATGGCCTCATACTGCTGCTCACACCCCGGTCCCAATCCTTTCAACCAATGAGTGAGAAAGTTTAGCAAGCAAAGTATGATAATATAATTGAGTAAAATAGTCTTTTCACTTGTCTCTTGCCTCATACAGTTTCTTGCAggatcattttcttttttttttatgttgcctATAGACCATTTCACTGTTTTTGTTCTGAGTGCTATTATTATTCTGAAACCTACTTTTAATGTTAATTATCAAGAATATTTTGAAGTTACTGATAAAtgcagaataaataaaaatcttaaaatt
>XM_039806708.1
AGGACATCCTGCCTTCTCCACCATGGTTTCAAAACTCTGCAGCCAAATACTGGCCATGCCCCGCTGTCAGCTGTCACACACCATCCTCACTGAGAAGAACTGATCAAACTGAAACTCAGTAGAATCCTGCCATCACAGAATGCATCTCCTGATGCTGATCTTTGGGATTGTGCTTCTCCCTAAAGCCTACACCTTGAAATGTTATGAGTGTACACCGGGAATCTCAGGAACCTGCACAGATACATCAAAAGAATGCCCTTTGCAGGGTCAACAGTGTGGGGCAATTAAAGTCACTTCATATGCAGGTGGTTCAAAAATTCTTGATGTCAACTCAAAAAGCTGTGCTTTGGCTGAAGAGTGTGTTGAGGCCTCTGTCAACTTTGGAATAGCCAACACCGTAATAACCAGCAACTGTTGCACCTCCGATCTCTGCAACACCCAACCTGCCCCTGAACCCAGCAAATACAATCCAAATGGTAAAAAGTGCTTCTCCTGTGACGGACAAAAGTGCACCAACACTCTAAACTGTGAGGGGAATGAGGACTACTGCATCTCAACAACAGTGAATGCAGGAGGTCAAACAGTGACCATGAAGGGCTGTGCCTCCAAGACGATTTGCTCAACGCAAACCACACAGACTACAGGAGCCCTTGGAACAGAAATTAGCTGCTGTCaggggaacttctgcaacagcgCCAGCAGCACAAGTGCTGGCCTTCTGCTCCTGGTGGCACCGCTGGTCTCTTTGGTCATGCTCTCCTAACTGGTGGAGACGGCAGCATCACCACTCAGCTTTTCTCTCATCTTTGCATGGCCTCATACTGCTGCTCACACCCCGGTCCCAATCCTTTCAACCAATGAGTGAGAAAGTTTAGCAAGCAAAGTATGATAATATAATTGAGTAAAATAGTCTTTTCACTTGTCTCTTGCCTCATACAGTTTCTTGCAggatcattttcttttttttttatgttgcctATAGACCATTTCACTGTTTTTGTTCTGAGTGCTATTATTATTCTGAAACCTACTTTTAATGTTAATTATCAAGAATATTTTGAAGTTACTGATAAAtgcagaataaataaaaatcttaaaattc
>XM_039806709.1
AGGACATCCTGCCTTCTCCACCATGGTTTCAAAACTCTGCAGCCAAATACTGGCCATGCCCCGCTGTCAGCTGTCACACACCATCCTCACTGAGAAGAACTGATCAAACTGAAACTCAGTAGAATCCTGCCATCACAGAATGCATCTCCTGATGCTGATCTTTGGGATTGTGCTTCTCCCTAAAGGTGGTTCAAAAATTCTTGATGTCAACTCAAAAAGCTGTGCTTTGGCTGAAGAGTGTGTTGAGGCCTCTGTCAACTTTGGAATAGCCAACACCGTAATAACCAGCAACTGTTGCACCTCCGATCTCTGCAACACCCAACCTGCCCCTGAACCCAGCAAATACAATCCAAATGGTAAAAAGTGCTTCTCCTGTGACGGACAAAAGTGCACCAACACTCTAAACTGTGAGGGGAATGAGGACTACTGCATCTCAACAACAGTGAATGCAGGAGGTCAAACAGTGACCATGAAGGGCTGTGCCTCCAAGACGATTTGCTCAACGCAAACCACACAGACTACAGGAGCCCTTGGAACAGAAATTAGCTGCTGTCaggggaacttctgcaacagcgCCAGCAGCACAAGTGCTGGCCTTCTGCTCCTGGTGGCACCGCTGGTCTCTTTGGTCATGCTCTCCTAACTGGTGGAGACGGCAGCATCACCACTCAGCTTTTCTCTCATCTTTGCATGGCCTCATACTGCTGCTCACACCCCGGTCCCAATCCTTTCAACCAATGAGTGAGAAAGTTTAGCAAGCAAAGTATGATAATATAATTGAGTAAAATAGTCTTTTCACTTGTCTCTTGCCTCATACAGTTTCTTGCAggatcattttcttttttttttatgttgcctATAGACCATTTCACTGTTTTTGTTCTGAGTGCTATTATTATTCTGAAACCTACTTTTAATGTTAATTATCAAGAATATTTTGAAGTTACTGATAAAtgcagaataaataaaaatcttaaaattc
>XM_039806710.1
TGAAGGAGTGGTCTGAGGATGAAGACAACCCCTTCTCAGGAGAACTACTTTTGCCCTTAACAGATCAAACTGAAACTCAGTAGAATCCTGCCATCACAGAATGCATCTCCTGATGCTGATCTTTGGGATTGTGCTTCTCCCTAAAGGTGGTTCAAAAATTCTTGATGTCAACTCAAAAAGCTGTGCTTTGGCTGAAGAGTGTGTTGAGGCCTCTGTCAACTTTGGAATAGCCAACACCGTAATAACCAGCAACTGTTGCACCTCCGATCTCTGCAACACCCAACCTGCCCCTGAACCCAGCAAATACAATCCAAATGGTAAAAAGTGCTTCTCCTGTGACGGACAAAAGTGCACCAACACTCTAAACTGTGAGGGGAATGAGGACTACTGCATCTCAACAACAGTGAATGCAGGAGGTCAAACAGTGACCATGAAGGGCTGTGCCTCCAAGACGATTTGCTCAACGCAAACCACACAGACTACAGGAGCCCTTGGAACAGAAATTAGCTGCTGTCaggggaacttctgcaacagcgCCAGCAGCACAAGTGCTGGCCTTCTGCTCCTGGTGGCACCGCTGGTCTCTTTGGTCATGCTCTCCTAACTGGTGGAGACGGCAGCATCACCACTCAGCTTTTCTCTCATCTTTGCATGGCCTCATACTGCTGCTCACACCCCGGTCCCAATCCTTTCAACCAATGAGTGAGAAAGTTTAGCAAGCAAAGTATGATAATATAATTGAGTAAAATAGTCTTTTCACTTGTCTCTTGCCTCATACAGTTTCTTGCAggatcattttcttttttttttatgttgcctATAGACCATTTCACTGTTTTTGTTCTGAGTGCTATTATTATTCTGAAACCTACTTTTAATGTTAATTATCAAGAATATTTTGAAGTTACTGATAAAtgcagaataaataaaaatcttaaaattc

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97980 True 1343 lncRNA 0.40 5 18455574 18461325
XM_039806708.1 False 1102 mRNA 0.44 6 18457830 18461326
XM_039806709.1 False 982 mRNA 0.44 5 18457830 18461326
XM_039806710.1 False 943 mRNA 0.43 4 18458694 18461326

Neighbor

gene id symbol gene type direction distance location
smg9 smg9 coding upstream 19325 18425189 ~ 18436249 (+)
si:dkey-79d12.5 NA coding upstream 57857 18395407 ~ 18397717 (+)
LOC120562815 NA coding upstream 67115 18387345 ~ 18388459 (+)
has1 has1,LOC102795195,LOC103143133 coding upstream 136908 18314669 ~ 18318666 (+)
LOC120562798 LOC104954816,LOC108249991,LOC102795480 coding upstream 144076 18310072 ~ 18311498 (+)
LOC120562809 NA coding downstream 13176 18474502 ~ 18479022 (+)
LOC120562811 NA coding downstream 84347 18545673 ~ 18548197 (+)
LOC120562049 NA coding downstream 176883 18638209 ~ 18641329 (+)
LOC120561938 NA coding downstream 238976 18700302 ~ 18712968 (+)
LOC120562799 NA coding downstream 263726 18725052 ~ 18743800 (+)
G73330 NA non-coding upstream 7145 18440987 ~ 18448429 (+)
G73326 NA non-coding upstream 31171 18423989 ~ 18424403 (+)
G73311 NA non-coding upstream 60379 18391339 ~ 18395195 (+)
G73307 NA non-coding upstream 124661 18330667 ~ 18330913 (+)
G73254 NA non-coding upstream 244151 18202757 ~ 18211423 (+)
LOC120562823 NA non-coding downstream 28798 18490124 ~ 18495344 (+)
G73338 NA non-coding downstream 39825 18501151 ~ 18565082 (+)
G73361 NA non-coding downstream 225716 18687042 ~ 18692970 (+)
G73377 NA non-coding downstream 289019 18750345 ~ 18750799 (+)
G73484 NA non-coding downstream 351983 18813309 ~ 18815597 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other upstream 34853 18399056 ~ 18420721 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other upstream 676444 17750930 ~ 17779130 (+)
G73123 phactr4 other upstream 808388 17645513 ~ 17647186 (+)
ubxn11 NA other upstream 994456 17456643 ~ 17461118 (+)
G73031 LOC103366415 other upstream 1003006 17449585 ~ 17452568 (+)
LOC120562806 NA other downstream 5102 18466428 ~ 18470078 (+)
LOC120562796 NA other downstream 171076 18632402 ~ 18637307 (+)
LOC120562819 NA other downstream 191060 18652386 ~ 18655731 (+)
LOC120562824 NA other downstream 283336 18744662 ~ 18746675 (+)
proser3 NA other downstream 357875 18819201 ~ 18828688 (+)

Expression


Co-expression Network