LOC120562824


Basic Information

Item Value
gene id LOC120562824
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18744662 ~ 18746675 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU98057
CCCCCGCCAGCAGCTATCAGTGGCATAATGAAACTGGTGCTCAGCTGCATCAAGGAAACATCTACATGCTGCCAAATGTCTCCAGACACACAGGAGCTCTGTACTGTACTGCCATCAATGCAGTAGGACGAGGCATTTCAACCCCTGTGCAGCTTAATGTGTTATATGCCCCTGAGATTAAGACGGCTTCTGCCTGCTCCTCTGAGGCAGATATggtaaagtgtgtgtgcattgcGGAGTCCAAGCCTCCCAGCATGGTCTATTTTGTGCTTTCTGACAGAGTCCTGCCAAGCACCGAGGTAGAGAAACATGGCTTTGTTACCACTGGGACTCTGCGGGCAAAGTTTGGATCTTCTCAACACCCTGGGCAATGCCAACCTCACACTCCCTTTACCtaacgttttttattttttattttcagaagCACATGACATTCACCTGAACACTGAAGGAATGAACTTTGTATTGAGAAAGAGTAAAATTACACTACATGGTTTCTGTTTGGACAGGTAAGATGCAGAATCTTTATATTATCATCACTTCTGGAGCAGGAGGGATTTTGGTGATGCTTTTAATAACAGTGACAGTTGTTAAAAAACAGTAAGTTATGTTTTTCAAATAAAGCATTGAAATGTGATCGCTGTTAGACATTTAAAAGAtgtgtacataaaaaaaataaaataaaagggtgaggctatttgcacccctggtacaattagcagtatgctatttgtaccctggtacaattagcagtgtatgctatttgcacccatggtacaattagcagtatgctatttgcacccctggtacaattagcagtatgctatttgtaccctggtgcaattagaagtggatgctatttgcacccctggtacaattagaagtgtatgctatttgcacccctggtacaaatatcaatgtatgctatttgcacccctgtgcatttacagtaccttggcatatatttacacatagttatccatactactcatgtattacacctttttggaatattatcgccctgacattcttaccctaaccataaccatcccactcctcttgcctaaacctaaccaacccaaccagagcaggcatattcatgagtcttcccctaccaccctgcaaaaaaaaataaaataataatacgcgttcgcgggtcctgacttgcgcaattgcatgcaaattatccaatccaaagtTATTATTCCAAAAAATAAGATCACCCCACAGGGGAATCTAACTCCAAACGCCCATACCAAAGGCAAGcgcactaaccactcacctagcaattctttcaggaaattaaacaactttttaccacttggtttcttcaagcctcggttgctaggtaaccatactgtatacaaaaaaataggtactaactaacaaactaacggttgtatgctttcactgaagacagaaagcgcaactgtagtatccattttccgctagaaattaaattgttataaactttagagacaaaacttccctaatatgccagtttctgcggtcatggaagatgaacgtccgccatgatttcggtgcacgcgagcaacgtttttttgttgttacgtcacagggtgtaaatagctcagctgtgtggccgaggctattcgtaccgggggtgcaaatagacactccatAAAATAAATGCCATTGTGAACAGACaccagaaacatacacacatcgtTGGGTTTCAGGTTCTTAAACTAAACACCATTATTCTGCCAGCAGGGGGAGGTCTAAGGATGCACCAACACCTCGCATGAGCTCACTGAAAACAGATAAAGATGTGGTGCTCCCTCAGTATGCTGCAACAAAAAGGTTTTAGTCATTTACCTCAGTTTAAACaaacatgtcaatgtcaaaaGTGAAACCTTGAATAATaaagctgtaaaaaaacaaaaa
>XR_005639852.1
CAGCAGCTATCAGTGGCATAATGAAACTGGTGCTCAGCTGCATCAAGGAAACATCTACATGCTGCCAAATGTCTCCAGACACACAGGAGCTCTGTACTGTACTGCCATCAATGCAGTAGGACGAGGCATTTCAACCCCTGTGCAGCTTAATGTGTTATATGCCCCTGAGATTAAGACGGCTTCTGCCTGCTCCTCTGAGGCAGATATggtaaagtgtgtgtgcattgcGGAGTCCAAGCCTCCCAGCATGGTCTATTTTGTGCTTTCTGACAGAGTCCTGCCAAGCACCGAGGTAGAGAAACATGGCTTTGTTACCACTGGGACTCTGCGGGCAAAGTTTGGATCTTCTCAACACCCTGGGCAATGCCAACCTCACACTCCCTTTACCtaacgttttttattttttattttcagaagCACATGACATTCACCTGAACACTGAAGGAATGAACTTTGTATTGAGAAAGAGTAAAATTACACTACATGGTTTCTGTTTGGACAGGTAAGATGCAGAATCTTTATATTATCATCACTTCTGGAGCAGGAGGGATTTTGGTGATGCTTTTAATAACAGTGACAGTTGTTAAAAAACAGTAAGTTATGTTTTTCAAATAAAGCATTGAAATGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98057 True 1908 TUCP 0.41 2 18744662 18746675
XR_005639852.1 False 630 lncRNA 0.43 2 18744669 18745404

Neighbor

gene id symbol gene type direction distance location
LOC120562799 NA coding upstream 862 18725052 ~ 18743800 (+)
LOC120562045 NA coding upstream 8077 18731402 ~ 18736585 (+)
LOC120561938 NA coding upstream 31694 18700302 ~ 18712968 (+)
LOC120562049 NA coding upstream 103333 18638209 ~ 18641329 (+)
LOC120562811 NA coding upstream 196465 18545673 ~ 18548197 (+)
LOC120562035 NA coding downstream 2410 18749085 ~ 18773822 (+)
si:dkey-238d18.4 LOC104961375,LOC103359602 coding downstream 43950 18790625 ~ 18799451 (+)
hsc70 LOC103359601,LOC103478507,LOC104932369,LOC106945881,LOC102237422,LOC106517696 coding downstream 53680 18800355 ~ 18805299 (+)
LOC120562797 ctrl coding downstream 59327 18806002 ~ 18808414 (+)
LOC120562037 NA coding downstream 62681 18809356 ~ 18812372 (+)
G73361 NA non-coding upstream 51692 18687042 ~ 18692970 (+)
G73338 NA non-coding upstream 179580 18501151 ~ 18565082 (+)
LOC120562823 NA non-coding upstream 249318 18490124 ~ 18495344 (+)
G73330 NA non-coding upstream 296233 18440987 ~ 18448429 (+)
G73326 NA non-coding upstream 320259 18423989 ~ 18424403 (+)
G73377 NA non-coding downstream 3670 18750345 ~ 18750799 (+)
G73484 NA non-coding downstream 66634 18813309 ~ 18815597 (+)
G73493 NA non-coding downstream 125699 18872374 ~ 18873957 (+)
G73499 aplp1 non-coding downstream 161828 18908503 ~ 18911216 (+)
G73501 aplp1 non-coding downstream 164719 18911394 ~ 18932173 (+)
LOC120562819 NA other upstream 88931 18652386 ~ 18655731 (+)
LOC120562796 NA other upstream 107355 18632402 ~ 18637307 (+)
LOC120562806 NA other upstream 274584 18466428 ~ 18470078 (+)
LOC120562807 NA other upstream 283336 18455574 ~ 18461326 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other upstream 323941 18399056 ~ 18420721 (+)
proser3 NA other downstream 72526 18819201 ~ 18828688 (+)
kmt2bb kmt2b other downstream 86570 18833245 ~ 18861958 (+)
G73570 LOC103371659 other downstream 401938 19148613 ~ 19158995 (+)
hcst LOC104925504,LOC104961397 other downstream 443345 19190020 ~ 19192102 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other downstream 700492 19447167 ~ 19453283 (+)

Expression


Co-expression Network