LOC120562631 (fxyd7,LOC103388498)


Basic Information

Item Value
gene id LOC120562631
gene name fxyd7,LOC103388498
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19159464 ~ 19162804 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU98344
GAAGCAGTTCTGCATGCTGTCCTGTCCAGTTACCTCGGTTCATATCCAACGTTAAACTGCAACCCCGCAACCTGCTACATATCTCTGAGACGGAGCTCTTCTACATCTCTACAGCACAGCCATGGCCACCACagAAACAATGTTTACAGACCGAAGTGACTTTGATTATGATTATGAGACATTGCGGACCACAGGGGTTGTCCTTGCTGTAGTCATGTTTGTCTCTGGCATTTTAATAGCCCTCAGTAAAAAATTCACAAAGTGTGTAAAATCCTCATCCAATTCCAGCTCATCTGGAAGCCAAATTCCACCAAAGACAGAGGtgCCTCCTCAAACAGTATAGAAAATAATGTATCAAAAGCGAGGAAGTCGATACGGGAACCACGGCAGCAAATACATACCCAGACACACCGGTTGTTTATAGCAATCCCTGTTATGGCTAATATACTTCTGCCAGCTGGATGAGCAATAAACAGGGTTTTCCAATGCATCTTTATCTGGTTTCTTTTAGGCTCCCAATGTTTTCTGTAGAATGTCTCAAAATAAGGGGGTGAAATATCTGTCTACACATTGCTCAGAATTGTGTGAGtgttgaaattaaaataaaaaaactaagaaAAACAAATGCTCCCAACCATGAGACTTGATTTGGTACttttaatcaaacaaatgcaacaagTGTTGTATCTCTTCCTTACATGTTACTCCTGTAAAACAATTAAATTAAGAGCAtgattaaatatttatatacaaAATCTGCAGCTCGAAACAAAGAATAGCATGTGTTGATCGATCGTAACAATTGtcttttgccttttatttttctttatttctgttgATATCTACTTGTTTAGCATGGCAGAATAATGAAAAACCCCAAAATAGAATAGGCCAAATATAACATGCTAAAAGGAAATAGCTGGTATCTTGATGAAAATATTCAGTAGCctaatgtattttgttttatttacaagctttgaaaatattcaaatgaatgaaatgtgtatttgttttcctattcgtcatttattttctgtttaaacCTATTGCAAAGGTATTACAAATGATGTTATTACCTGTAAAGCTGAACAATGAGGCAACTGTTTCAAATAAA
>XR_005639801.1
CAGAAACAATGTTTACAGACCGAAGTGACTTTGATTATGATTATGAGACATTGCGGACCACAGGGGTTGTCCTTGCTGTAGTCATGTTTGTCTCTGGCATTTTAATAGCCCTCATTCCAGCTCATCTGGAAGCCAAATTCCACCAAAGACAGAGGtgCCTCCTCAAACAGTATAGAAAATAATGTATCAAAAGCGAGGAAGTCGATACGGGAACCACGGCAGCAAATACATACCCAGACACACCGGTTGTTTATAGCAATCCCTGTTATGGCTAATATACTTCTGCCAGCTGGATGAGCAATAAACAGGGTTTTCCAATGCATCTTTATCTGGTTTCTTTTAGGCTCCCAATGTTTTCTGTAGAATGTCTCAAAATAAGGGGGTGAAATATCTGTCTACACATTGCTCAGAATTGTGTGAGtgttgaaattaaaataaaaaaactaagaaAAACAAATGCTCCCAACCATGAGACTTGATTTGGTACttttaatcaaacaaatgcaacaagTGTTGTATCTCTTCCTTACATGTTACTCCTGTAAAACAATTAAATTAAGAGCAtgattaaatatttatatacaaAATCTGCAGCTCGAAACAAAGAATAGCATGTGTTGATCGATCGTAACAATTGtcttttgccttttatttttctttatttctgttgATATCTACTTGTTTAGCATGGCAGAATAATGAAAAACCCCAAAATAGAATAGGCCAAATATAACATGCTAAAAGGAAATAGCTGGTATCTTGATGAAAATATTCAGTAGCctaatgtattttgttttatttacaagctttgaaaatattcaaatgaatgaaatgtgtatttgttttcctattcgtcatttattttctgtttaaacCTATTGCAAAGGTATTACAAATGATGTTATTACCTGTAAAGCTGAACAATGAGGCAACTGTTTCAAATAAAGGTCTCCTCGACATGA
>XR_005639802.1
CCAAAACCACAATCACAGACAGATTATAGCAACATCCAAATTATCTTCATTTATCACATCTTTCATTCATTTATCCCCCCCGACACTCGCACATACTGTACCACACAAGACTGTAAGGTACTCAGTAGATTGAAGATAGCTTAAACATCTTAAAATGGGTTTATCTGTTTACCCTACTATTTACTTTAATGTGGGGCTGCTGTGAAGTCCCCATCATGGCACATTTAGTCAACCTATTGGGAGTACCCTACCACTGTCAATGCAATGTTTCGCTGTGGCCACCAGAGGTCCCCTGCTGAGTTTACAGAGAGGGTTCTGAAGCAGTTCTGCATGCTGTCCTGTCCAGTTACCTCGGTTCATATCCAACGTTAAACTGCAACCCCGCAACCTGCTACATATCTCTGAGACGGAGCTCTTCTACATCTCTACAGCACAGCCATGGCCACCACagAAACAATGTTTACAGACCGAAGTGACTTTGATTATGTTCCAGCTCATCTGGAAGCCAAATTCCACCAAAGACAGAGGtgCCTCCTCAAACAGTATAGAAAATAATGTATCAAAAGCGAGGAAGTCGATACGGGAACCACGGCAGCAAATACATACCCAGACACACCGGTTGTTTATAGCAATCCCTGTTATGGCTAATATACTTCTGCCAGCTGGATGAGCAATAAACAGGGTTTTCCAATGCATCTTTATCTGGTTTCTTTTAGGCTCCCAATGTTTTCTGTAGAATGTCTCAAAATAAGGGGGTGAAATATCTGTCTACACATTGCTCAGAATTGTGTGAGtgttgaaattaaaataaaaaaactaagaaAAACAAATGCTCCCAACCATGAGACTTGATTTGGTACttttaatcaaacaaatgcaacaagTGTTGTATCTCTTCCTTACATGTTACTCCTGTAAAACAATTAAATTAAGAGCAtgattaaatatttatatacaaAATCTGCAGCTCGAAACAAAGAATAGCATGTGTTGATCGATCGTAACAATTGtcttttgccttttatttttctttatttctgttgATATCTACTTGTTTAGCATGGCAGAATAATGAAAAACCCCAAAATAGAATAGGCCAAATATAACATGCTAAAAGGAAATAGCTGGTATCTTGATGAAAATATTCAGTAGCctaatgtattttgttttatttacaagctttgaaaatattcaaatgaatgaaatgtgtatttgttttcctattcgtcatttattttctgtttaaacCTATTGCAAAGGTATTACAAATGATGTTATTACCTGTAAAGCTGAACAATGAGGCAACTGTTTCAAATAAAGGTCTCCTCGACATGA

Function

symbol description
fxyd7 Predicted to enable sodium channel regulator activity. Predicted to be involved in regulation of sodium ion transmembrane transporter activity. Predicted to act upstream of or within ion transport and regulation of ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98344 False 1114 lncRNA 0.36 6 19159781 19162788
XR_005639801.1 False 962 lncRNA 0.35 4 19160821 19162804
XR_005639802.1 True 1335 lncRNA 0.38 4 19159464 19162804

Neighbor

gene id symbol gene type direction distance location
LOC120562624 fcgbp coding upstream 11671 19129524 ~ 19147793 (+)
LOC120561940 NA coding upstream 38763 19116593 ~ 19120701 (+)
fxyd5 NA coding upstream 58390 19095468 ~ 19101074 (+)
nphs1 nphs1 coding upstream 69505 19021154 ~ 19089959 (+)
zmp:0000001114 NA coding upstream 203427 18934230 ~ 18956037 (+)
LOC120562651 tyrobp coding downstream 30671 19193475 ~ 19194806 (+)
LOC120562955 LOC102233830,LOC107102542,LOC103371668,LOC108241910,LOC101156432,LOC107378666,LOC101063201,LOC103388495,LOC102205547 coding downstream 35716 19198520 ~ 19204699 (+)
LOC120562665 NA coding downstream 42794 19205598 ~ 19211398 (+)
LOC120562666 LOC102206297,LOC106517725,LOC104965579 coding downstream 48691 19211495 ~ 19220952 (+)
LOC120562959 NA coding downstream 82554 19245358 ~ 19269769 (+)
LOC120562629 NA non-coding upstream 446 19158475 ~ 19159018 (+)
LOC120562630 NA non-coding upstream 1095 19148521 ~ 19158369 (+)
G73568 NA non-coding upstream 33616 19125156 ~ 19125848 (+)
G73501 aplp1 non-coding upstream 227291 18911394 ~ 18932173 (+)
G73499 aplp1 non-coding upstream 248248 18908503 ~ 18911216 (+)
G73586 csnk2b,LOC102207154,LOC106573472,LOC101175345,LOC104925497,LOC102778826 non-coding downstream 109923 19272727 ~ 19276516 (+)
G73606 NA non-coding downstream 156634 19319438 ~ 19320048 (+)
LOC120562732 NA non-coding downstream 290965 19453769 ~ 19456616 (+)
LOC120562701 NA non-coding downstream 451699 19614503 ~ 19625611 (+)
G73776 hdac9 non-coding downstream 472069 19634873 ~ 19639459 (+)
G73570 LOC103371659 other upstream 469 19148613 ~ 19158995 (+)
kmt2bb kmt2b other upstream 297506 18833245 ~ 18861958 (+)
proser3 NA other upstream 330776 18819201 ~ 18828688 (+)
LOC120562824 NA other upstream 412789 18744662 ~ 18746675 (+)
LOC120562819 NA other upstream 503733 18652386 ~ 18655731 (+)
hcst LOC104925504,LOC104961397 other downstream 27216 19190020 ~ 19192102 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other downstream 284363 19447167 ~ 19453283 (+)
G73779 hdac9 other downstream 484171 19646975 ~ 19649511 (+)
LOC120561838 tppp other downstream 1029886 20192690 ~ 20209327 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other downstream 1051784 20214588 ~ 20226991 (+)

Expression


Co-expression Network