hcst (LOC104925504,LOC104961397)


Basic Information

Item Value
gene id hcst
gene name LOC104925504,LOC104961397
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19190020 ~ 19192102 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU98350
CACAAATACAAACAGGAAGGAAGAAAATCTGACGTCAGCCCTCAAAAGTGAAAACTAAAGGGAAACAGTGTCACAGCAACATTTAGATTCCAGACAGCAGGTCAGCCCGAGAAGCGCAGaACGGTCACGACTGAGTTGACAAACTTGACAATGGCACACAACAAATTCTTTATCGTTGTCCTATTTTTTCTGTGCAACCTGGCTGTGGCGCTCACAGAGAGCAATGTGTCCTGCTACAGGGTCGAACCGGGGACAATAGCAGGCATCATCTGTGCAGATATGCTGCTGACCCTTATCATTGTCATTGTTACCTACCGATGTGCCAGTTTAAGGCGTCAGAAGATAGAAAATGCTAACAAAGTGTATATGAATGTACGGGCCAACTGCAAAAGCTAATCTAAAGATGGTGCAGTACATTATGAAATTATGTTCATTTTTTAAGATCCTGTTTTGTAAAAAAACGC
>XM_039804865.1
GGGAAACAGTGTCACAGCAACATTTAGATTCCAGACAGCAGGTCAGCCCGAGAAGCGCAGACTTGTGACTCATTGTGAAAAAGGAGTTCTTTATTCCGTACtgcagaatcaaaaggtcaaaCCTACTGTTTCAAACCTTTTAGaACGGTCACGACTGAGTTGACAAACTTGACAATGGCACACAACAAATTCTTTATCGTTGTCCTATTTTTTCTGTGCAACCTGGCTGTGGCGCTCACAGAGAGCAATGTGTCCTGCTACAGGGTCGAACCGGGGACAATAGCAGGCATCATCTGTGCAGATATGCTGCTGACCCTTATCATTGTCATTGTTACCTACCGATGTGCCAGTTTAAGGCGTCAGAAGATAGAAAATGCTAACAAAGTGTATATGAATGTACGGGCCAACTGCAAAAGCTAATCTAAAGATGGTGCAGTACATTATGAAATTATGTTCATTTTTTAAGATCCTGTTTTGTAAAAAAACGCCATTACAAAATtgtataacattttttttttacattaaaccTTTGTTCCAATAAACACAAGTAGAATGTCTTGCACATGTTACATTTCTGCTTAGCCTTACAAGGTGTGCTTGTGGTCTCCATCTATCCGCTTGGAGTTATTTTGCAAAACCTAATAAACAAAAGGTGTGTCAGACTGTTTAAACTAAATCATGTTCACCAACCTCGTAAATAAAATATCTCTGAATGCTTTCAAGGTTCATGTAATGTTGGCACTGTAACACCACCATACAGCACCCTCTGCAGTTGACTTTCGGTAGCACAATGCTGTATTTCAATAGGCCCTAAAGATTTTATGtggaaatattttcattatgaaAGGCTGCATTGATATGAGTGATTTCCAAAAATAGAAGACGGACCCAGTCATTTTACATGGATGTTTTACAGTGTAGCATCTGACAAACCTCTGAGTTGATTatgtattaaaataaatgttgattaa
>XM_039804866.1
TTTAGATTCCAGACAGCAGGTCAGCCCGAGAAGCGCAGaACGGTCACGACTGAGTTGACAAACTTGACAATGGCACACAACAAATTCTTTATCGTTGTCCTATTTTTTCTGTGCAACCTGGCTGTGGCGCTCACAGAGAGCAATGTGTCCTGCTACAGGGTCGAACCGGGGACAATAGCAGGCATCATCTGTGCAGATATGCTGCTGACCCTTATCATTGTCATTGTTACCTACCGATGTGCCAGTTTAAGGCGTCAGAAGATAGAAAATGCTAACAAAGTGTATATGAATGTACGGGCCAACTGCAAAAGCTAATCTAAAGATGGTGCAGTACATTATGAAATTATGTTCATTTTTTAAGATCCTGTTTTGTAAAAAAACGCCATTACAAAATtgtataacattttttttttacattaaaccTTTGTTCCAATAAACACAAGTAGAATGTCTTGCACATGTTACATTTCTGCTTAGCCTTACAAGGTGTGCTTGTGGTCTCCATCTATCCGCTTGGAGTTATTTTGCAAAACCTAATAAACAAAAGGTGTGTCAGACTGTTTAAACTAAATCATGTTCACCAACCTCGTAAATAAAATATCTCTGAATGCTTTCAAGGTTCATGTAATGTTGGCACTGTAACACCACCATACAGCACCCTCTGCAGTTGACTTTCGGTAGCACAATGCTGTATTTCAATAGGCCCTAAAGATTTTATGtggaaatattttcattatgaaAGGCTGCATTGATATGAGTGATTTCCAAAAATAGAAGACGGACCCAGTCATTTTACATGGATGTTTTACAGTGTAGCATCTGACAAACCTCTGAGTTGATTatgtattaaaataaatgttgattaa
>XM_039804867.1
ATTTAGATTCCAGACAGCAGGTCAGCCCGAGAAGCGCAGACTTGTGACTCATTGTGAAAAAGGAGTTCTTTATTCCGTACtgcagaatcaaaagaACGGTCACGACTGAGTTGACAAACTTGACAATGGCACACAACAAATTCTTTATCGTTGTCCTATTTTTTCTGTGCAACCTGGCTGTGGCGCTCACAGAGAGCAATGTGTCCTGCTACAGGGTCGAACCGGGGACAATAGCAGGCATCATCTGTGCAGATATGCTGCTGACCCTTATCATTGTCATTGTTACCTACCGATGTGCCAGTTTAAGGCGTCAGAAGATAGAAAATGCTAACAAAGTGTATATGAATGTACGGGCCAACTGCAAAAGCTAATCTAAAGATGGTGCAGTACATTATGAAATTATGTTCATTTTTTAAGATCCTGTTTTGTAAAAAAACGCCATTACAAAATtgtataacattttttttttacattaaaccTTTGTTCCAATAAACACAAGTAGAATGTCTTGCACATGTTACATTTCTGCTTAGCCTTACAAGGTGTGCTTGTGGTCTCCATCTATCCGCTTGGAGTTATTTTGCAAAACCTAATAAACAAAAGGTGTGTCAGACTGTTTAAACTAAATCATGTTCACCAACCTCGTAAATAAAATATCTCTGAATGCTTTCAAGGTTCATGTAATGTTGGCACTGTAACACCACCATACAGCACCCTCTGCAGTTGACTTTCGGTAGCACAATGCTGTATTTCAATAGGCCCTAAAGATTTTATGtggaaatattttcattatgaaAGGCTGCATTGATATGAGTGATTTCCAAAAATAGAAGACGGACCCAGTCATTTTACATGGATGTTTTACAGTGTAGCATCTGACAAACCTCTGAGTTGATTatgtattaaaataaatgttgattaa

Function

NR:

description
PREDICTED: hematopoietic cell signal transducer-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98350 False 464 lncRNA 0.43 5 19190020 19191619
XM_039804865.1 True 971 mRNA 0.38 6 19190079 19192102
XM_039804866.1 False 866 mRNA 0.38 5 19190101 19192102
XM_039804867.1 False 922 mRNA 0.38 6 19190100 19192102

Neighbor

gene id symbol gene type direction distance location
LOC120562624 fcgbp coding upstream 42227 19129524 ~ 19147793 (+)
LOC120561940 NA coding upstream 69319 19116593 ~ 19120701 (+)
fxyd5 NA coding upstream 88946 19095468 ~ 19101074 (+)
nphs1 nphs1 coding upstream 100061 19021154 ~ 19089959 (+)
zmp:0000001114 NA coding upstream 233983 18934230 ~ 18956037 (+)
LOC120562651 tyrobp coding downstream 1373 19193475 ~ 19194806 (+)
LOC120562955 LOC102233830,LOC107102542,LOC103371668,LOC108241910,LOC101156432,LOC107378666,LOC101063201,LOC103388495,LOC102205547 coding downstream 6418 19198520 ~ 19204699 (+)
LOC120562665 NA coding downstream 13496 19205598 ~ 19211398 (+)
LOC120562666 LOC102206297,LOC106517725,LOC104965579 coding downstream 19393 19211495 ~ 19220952 (+)
LOC120562959 NA coding downstream 53256 19245358 ~ 19269769 (+)
LOC120562631 fxyd7,LOC103388498 non-coding upstream 27216 19159464 ~ 19162804 (+)
LOC120562629 NA non-coding upstream 31002 19158475 ~ 19159018 (+)
LOC120562630 NA non-coding upstream 31651 19148521 ~ 19158369 (+)
G73568 NA non-coding upstream 64172 19125156 ~ 19125848 (+)
G73501 aplp1 non-coding upstream 257847 18911394 ~ 18932173 (+)
G73586 csnk2b,LOC102207154,LOC106573472,LOC101175345,LOC104925497,LOC102778826 non-coding downstream 80625 19272727 ~ 19276516 (+)
G73606 NA non-coding downstream 127336 19319438 ~ 19320048 (+)
LOC120562732 NA non-coding downstream 261667 19453769 ~ 19456616 (+)
LOC120562701 NA non-coding downstream 422401 19614503 ~ 19625611 (+)
G73776 hdac9 non-coding downstream 442771 19634873 ~ 19639459 (+)
G73570 LOC103371659 other upstream 31025 19148613 ~ 19158995 (+)
kmt2bb kmt2b other upstream 328062 18833245 ~ 18861958 (+)
proser3 NA other upstream 361332 18819201 ~ 18828688 (+)
LOC120562824 NA other upstream 443345 18744662 ~ 18746675 (+)
LOC120562819 NA other upstream 534289 18652386 ~ 18655731 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other downstream 255065 19447167 ~ 19453283 (+)
G73779 hdac9 other downstream 454873 19646975 ~ 19649511 (+)
LOC120561838 tppp other downstream 1000588 20192690 ~ 20209327 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other downstream 1022486 20214588 ~ 20226991 (+)
gra NA other downstream 1130228 20322330 ~ 20325961 (+)

Expression


Co-expression Network