G74204 (scrt1,LOC108241025,LOC103140879,LOC105929800,LOC103353874,LOC102233766)


Basic Information

Item Value
gene id G74204
gene name scrt1,LOC108241025,LOC103140879,LOC105929800,LOC103353874,LOC102233766
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 20832323 ~ 20836748 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU99240
TTCTATGTTGTGTGTATTCATTACGAATTGCTGGAAGACTTtattgtatgttgaaacaagacaagacaaaaacTATGACAAACTGCCCTGGTTGGTTAAGATTATTCTTTATTATGAAGTGCCACAAAATGCTTTGTGTTCATTGTGCTTACATTGTCTGAATTCTGGCTCAAAAAACCCCAGGAGATCCTCTCTCTGCAACAGAGAGCCAAACCTTCTGAGATAAGGTGTGTTAGATATCGCTATACAGCAGTAAAAATGTCTCAATCCAAAGGATTCTTTACAAACCCTCTTGCAATAAATGATTATTTAGGTTATCATCATTCTTTAACttggaaatacaaaaaaaagaagagaggtcAAGCTAGTACAAGGTTTTTAATTCTTCTCTACCTGAATTCTAGTTTCATTGTGCTACTTTCTTCAAGGTGGAGATGACTAGAATGGAAGTGCTTAGAGAGACCAGACCTGGAGCTCACCtagagacagacacagtcagacagacgcacacacacacagattttctGCCTCAAAACCACTAAACAGCCACCTAACAACAACGTTAGCCAAATAGCCTTAAGACGTTTGGACTGCAGTGCAAAGTTGCAAAGTGTTTTAAAACACAATGATACAATTTGTGATAAGTAAACAACAACTGGAGACACCGCTGCCAGAGAGACTCTCAGTGGTTTGTTTAGCAACTTTGTACCCGTCACACTTATCAGTTGCTGTGATTTCAGAGTTGGTGGTTAAAATAATATcatattgtaatttatttctCTACCAGGGAATGATGTCTCTTAGATGTATTAAGAAATATGAAAGTATatgcttttgttttctttgtatatATGGTCTCTTTGCCATACTTGTGCTTTTAATTTGGAATTGTATTTGTGTAGTACTTCTGTTTAAAAACACCTAATTTAATGTTTATCATCTGCTAGTTATTGTGAGTTTTTTGGCCAAAATAACTGATAAAAAGACAAAGTCAAACATTTCAGCACTAACAAGTTGAAGCTCTATGACTAATCGTCTGATACAATTCAAGTAATTGCAGCTTGAATCTTGTTCACACACCAGGGAGAGAGATAAGTCCTGTAATTTGCTGACTGGCATACTGATTGCTTCAGTCACAACAGAAACCGCCTCTTTCTTATTGACTTGTGAGCtacatttttcaaacaaaaaaagcttCTTTGTAAAAGACTTAAATATTGTATCGTCTCCTGTAAACCAAGACTTCCATTACAAAATGTTGACTTTTTTACTTCAGAACTGGTCTTTCTGCCTTTGATGAAAAACAGGTCCTATAACTTTATCTCTGAGATGTGAATGAAATTAGGTAATGGTGCTATGTATCAGTGCAGACTCGCCTTTTGTCCCTAAAACCCTTAATGGTGTTGAATATCAGTCAACCCAATCTCTAATTGACTAATATCATGCCTGAGGAAGCGCTGTAATTATCAAATCTGCCTTTATCAGAGATTCACATCTGATTATTAAACTAATTTCTTTTCAATTGTTAGAAGCTTGACTGTGGCCACAgattctctgtgtgtctcccaCAACATCTCATCAGCAAGTACTATGTGCTCGCATGTGTGGGCATGCACTTGTGTCTATGCAAGGTTACAATGAATACATATGGCATATAAACAAGAAGTTCATGTTTTGTGCAGATCTGTGTCctcagtctgtctctcaggAAGCTCCATGAATCTGTAGAAAAAGGTTTCTGAGCTGCAGAGAACTGGGTTCAGCAACACTGGCATTGGCCACCTAGATCAAAGGTTAAACAATCTATAGGTTGGGGTTGATTAGAGTTAGCCTGTCTGTAGGTGTATCACTCATAGAGTTAGCCCATGGTTCGGCCCAGTAGGGTTAAATGGGGCCTACTGCAGAATAATCAGTGCTTGGCCTTGTCTGTCTATTGGACTGTAACAATTAAGCTGCAGTCGGACCTTCCAGCTAAAGTGCATGCTTTTTCTGTGGTTTAAGAATGCACGCTTTGTGGTTTGGAAGTGCACTGGAAGGGTAGTTGAATAATGCATTGCATTTAAATGCACCAAACTTTGACTTGGTTTGCTTTGTTTGAAAGCATACTGAGAGTTGCTAAGTACCATATCATTTTAGGTTGGTGCACATCTGGGTGCAATCTGATTGCTGTATTAAccttattttattgtttatctGTATGAGGACATATATGGTTATAAAAAAGTATGTTAAAGGCCTATTGTTATTTGGCTGCATGACacagaaaatatgttttcaacACATTTAGGTGCCATTTTAACGTCCCAGGACCTTTAATAAACTATAGAACTTTCATGAATGACCAATAATCCAATACATGTTGAGAGGCCTAATTCAAAGTTAGGCCTCCCCTGGTTATTGTTAGCAGGCTTATTTCATGCTACAGTTAGCCAAGCACAGGTCTGTCAGGGTTACAGTTATCCTACAATAGGCCTCACACCCAGCAGGCAGCTGATCCCAGCCTCTCTAGCCTACATCCTACATTAGTTCTACTCGCTAAGAGGCAGGCAGTGCATAACAAAAGAGGAAAGACAggacttttctttttgttactCTAACACTACATTGGCATGTTCCCTGATGTCTGTAATATTAGTCTTTTTCTGTTTATGACTATAGGTGAAGTAAAACATACCTGATTTTTAAACTGCTATACAGTAGTAGGTAATACTTCATCATAAAATACCATGCATTAGGTGATTATTGCTTTTAAAGAGTCATACGGAGGCTCCAAGAGAAAAATATTGCCCTCAGGTTCTATCTATAGGAATTTGGCAAAAAATCATAAGCTTTTATGATGTTGGCATagatttcattattttttttttgcatgcaaTAATGTTAATaagaaaaaaggtaaacaatatAATAGCAAAAAAATAGTACTCAAAAAAGTGACATATGCTTTGGCCTGTAGTAATAAAAAGAGGTTGGCAGATATCCAAATACAGAAATTAAAGTGCAACAAATAAGTTAACGGTATCACTTCATTGTTATCAAATCAAATATAAacatacaacaaataaaaatggacaagcaaaaagctaaaataaataagtaaataaataggaTTTTTACCTCAGTAGTGGAGCGAATATGGTCACTTGGTGCAGCagaacattattattatcattattattactattattattattattcccccaaaaaacaaaatcagaagGAATAACTCATTCACTGCGTTTCCGTGCAGGGAGGAACCCAGTAGCTATAGTCTTACTAATGTCTTTGTCGTCatcctcatcatcctcatcatcatcatcatcatcaccattatCATCATCAGTGTCCTAAAATATATGATGCCATACTGTATCTAAATGCCAGAAGGAAGCCGTGTTAGTATTATTGTCTCCATCCAGAACAGACGGAGGAAGAGGCGGTGAAGAGTTTTTGAGGAAGTGCATGCGTAGATCAGTTAAATCCTTAAGTGGGCAAATCTCAAGGAGAAAAATTGTGCTATCTTCATCATCATGAATAGGCTCCAATGGAAAGCAAGTTGGGGGGaaagtgtgagagggggaggagggaaagCAAGGTCATATTCTGACCAAAAATAGATTGTTTGTGTCTGCAGTTCAGTCTGTAGGGATAATGGTAATTTATGTCTGCAGTTTTGTCTATTGTTTTATCTATGCAGGGGGTCATTCATCTAGGGGGccgagaggagagaaggggCCTTTGAAACAGGCAGACTCGTAGTGCTTGTTCAGGTAACTCTTGAGCGCGAAGGTCTTGTTGCAGCGTTTACACTTGAAGTGCTTGAAGGCCGAGTGGGTCTGCATGTGAGCGCGCAGGTTCGAGCGGTCTGCGAAGGCCTTCCCGCAGTGGGCGCATCCGAatggcttctcacctgtgtgagaCCGCATGTGGCCCTGTAAAAGCCAGGGTCGACTGAACGCTTTCCCACACACATCACACTTGTGCTTGAGGTCGTGAGTGAGCAGGTGCATGGCCATGGCGGGCATGGACACATACACCTTACCGCAGGTTGGACATTTCTTTGCCAGCTTACTGTCCAGCGAGcggtgtgtctgtttgtgccgGCTCAGGTTGGAAGACGTGGCGTAGGTTTTTCCGCACTCGTTGCAGGTGTGCCTCTGGATGGTCCTGGGACTGCTGATAGCTTTCCTCCTCGAGCGGCCGTCGGTGATGAAGAAGGCATCGACTGTGTAACCCTCACTCACAGCAGCATCACCGTTGATGTAACCGTCAGTGATTTCTGAGCCAGGACTGTCAGGAGACTCAGAGTCAGGGGCCCCGTAGTCACTGTGGATACCATCGTAGAGGGGGTCAGGGGAGGGCACCTTGATCCCACCGTCACTCTCACCATCATACACAACAGGGCTGATGTAGTCGCTGATGTAAC

Function

symbol description
scrt1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nuclear body.

NR:

description
PREDICTED: transcriptional repressor scratch 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99240 True 4426 lncRNA 0.40 1 20832323 20836748

Neighbor

gene id symbol gene type direction distance location
LOC120561989 atp4a coding upstream 190472 20631458 ~ 20641851 (+)
si:dkey-12j5.1 LOC103353891,LOC103388393,LOC103478624,LOC102212439,LOC102778746 coding upstream 356769 20448227 ~ 20475554 (+)
LOC120562868 LOC100690947,LOC102779295,LOC104968267,LOC102211038,LOC101468916 coding upstream 452240 20368104 ~ 20380083 (+)
LOC120562869 LOC104968268,LOC100690679,LOC103353894 coding upstream 474126 20352377 ~ 20358197 (+)
fabp4b LOC104968266 coding upstream 480082 20350979 ~ 20352241 (+)
galnt1 galnt1 coding downstream 67105 20903853 ~ 20960657 (+)
LOC120562142 NA coding downstream 163523 21000271 ~ 21001642 (+)
nr4a3 nr4a3 coding downstream 244138 21080886 ~ 21103601 (+)
stx17 stx17,LOC102795111 coding downstream 270090 21106838 ~ 21117093 (+)
invs LOC102794544 coding downstream 292602 21129350 ~ 21151513 (+)
G74145 nacad,LOC104951159 non-coding upstream 217616 20607340 ~ 20614707 (+)
G74121 NA non-coding upstream 312241 20508733 ~ 20520082 (+)
G74119 NA non-coding upstream 347380 20484710 ~ 20484943 (+)
G74116 NA non-coding upstream 355956 20476164 ~ 20476367 (+)
G74091 NA non-coding upstream 408426 20402823 ~ 20423897 (+)
G74205 NA non-coding downstream 3812 20840560 ~ 20841769 (+)
G74208 NA non-coding downstream 54936 20891684 ~ 20892655 (+)
G74207 NA non-coding downstream 56391 20893139 ~ 20893942 (+)
G74230 rad54b non-coding downstream 239563 21076311 ~ 21222895 (+)
G74234 NA non-coding downstream 264422 21101170 ~ 21156912 (+)
glipr2l glipr2 other upstream 227158 20600323 ~ 20605165 (+)
gra NA other upstream 506362 20322330 ~ 20325961 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other upstream 605332 20214588 ~ 20226991 (+)
LOC120561838 tppp other upstream 622996 20192690 ~ 20209327 (+)
G73779 hdac9 other upstream 1182812 19646975 ~ 19649511 (+)
sec61b sec61b,LOC102796100 other downstream 171265 21008013 ~ 21011414 (+)
LOC120563169 NA other downstream 494664 21331412 ~ 21336665 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other downstream 566287 21403035 ~ 21415894 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other downstream 762286 21599034 ~ 21603458 (+)
G74633 tuft1,LOC102781808 other downstream 932800 21769548 ~ 21770286 (+)

Expression


Co-expression Network